Wall clock time and date at job start Tue Mar 31 2020 11:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53007 * 109.46846 * 2 1 4 4 C 1.52998 * 109.47426 * 120.00281 * 2 1 3 5 5 H 1.09000 * 109.46887 * 54.66368 * 4 2 1 6 6 N 1.46906 * 109.47014 * 294.66841 * 4 2 1 7 7 C 1.46894 * 110.99956 * 151.57596 * 6 4 2 8 8 H 1.08996 * 109.47375 * 325.91033 * 7 6 4 9 9 C 1.53005 * 109.47010 * 85.91048 * 7 6 4 10 10 C 1.53001 * 109.47175 * 205.90825 * 7 6 4 11 11 C 1.50696 * 109.47113 * 62.70641 * 10 7 6 12 12 H 1.08003 * 120.00190 * 5.05642 * 11 10 7 13 13 C 1.37877 * 120.00084 * 185.06035 * 11 10 7 14 14 N 1.31511 * 119.99923 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99879 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46958 * 89.99973 * 15 13 11 17 17 H 1.48501 * 109.46820 * 210.00127 * 15 13 11 18 18 H 1.48501 * 109.47128 * 329.99829 * 15 13 11 19 19 C 1.50693 * 109.47131 * 174.66998 * 4 2 1 20 20 C 1.38235 * 120.00104 * 79.72563 * 19 4 2 21 21 C 1.38243 * 120.00124 * 179.78891 * 20 19 4 22 22 C 1.38231 * 119.99563 * 0.46241 * 21 20 19 23 23 C 1.50700 * 119.99887 * 179.79376 * 22 21 20 24 24 C 1.53007 * 109.46820 * 239.97727 * 23 22 21 25 25 C 1.53000 * 109.47001 * 359.97438 * 23 22 21 26 26 C 1.53001 * 109.47484 * 119.97925 * 23 22 21 27 27 C 1.38242 * 120.00435 * 359.76661 * 22 21 20 28 28 C 1.38236 * 119.99726 * 0.02562 * 27 22 21 29 29 H 1.08994 * 109.46932 * 57.67322 * 1 2 3 30 30 H 1.09001 * 109.46886 * 177.67819 * 1 2 3 31 31 H 1.09006 * 109.46897 * 297.67596 * 1 2 3 32 32 H 1.08995 * 109.46930 * 240.00805 * 2 1 3 33 33 H 1.09007 * 109.46865 * 60.00283 * 3 2 1 34 34 H 1.08997 * 109.46632 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.47151 * 300.00392 * 3 2 1 36 36 H 1.00903 * 110.99952 * 27.62226 * 6 4 2 37 37 H 1.09004 * 109.47196 * 300.00017 * 9 7 6 38 38 H 1.09005 * 109.47070 * 60.00024 * 9 7 6 39 39 H 1.09001 * 109.47264 * 180.02562 * 9 7 6 40 40 H 1.09003 * 109.47003 * 182.69916 * 10 7 6 41 41 H 1.08990 * 109.47392 * 302.70180 * 10 7 6 42 42 H 0.97002 * 119.99710 * 180.02562 * 14 13 11 43 43 H 1.08005 * 120.00242 * 359.97438 * 20 19 4 44 44 H 1.07996 * 120.00038 * 180.25271 * 21 20 19 45 45 H 1.08994 * 109.47047 * 60.00383 * 24 23 22 46 46 H 1.09004 * 109.46764 * 179.97438 * 24 23 22 47 47 H 1.09000 * 109.47238 * 299.99391 * 24 23 22 48 48 H 1.08996 * 109.47465 * 60.00077 * 25 23 22 49 49 H 1.09004 * 109.46623 * 180.02562 * 25 23 22 50 50 H 1.09007 * 109.46969 * 299.99937 * 25 23 22 51 51 H 1.09002 * 109.47200 * 59.99605 * 26 23 22 52 52 H 1.08995 * 109.47305 * 180.02562 * 26 23 22 53 53 H 1.09003 * 109.46968 * 299.99926 * 26 23 22 54 54 H 1.07999 * 120.00182 * 179.97438 * 27 22 21 55 55 H 1.07996 * 119.99797 * 179.97438 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6009 -1.7176 1.2982 6 7 1.6584 0.0415 2.4452 7 6 1.4996 -0.8445 3.6061 8 1 1.1058 -1.8063 3.2779 9 6 2.8581 -1.0522 4.2787 10 6 0.5286 -0.2093 4.6034 11 6 -0.8275 -0.0656 3.9622 12 1 -1.0037 -0.4679 2.9755 13 6 -1.8435 0.5794 4.6351 14 7 -1.6291 1.0689 5.8367 15 14 -3.5243 0.7581 3.8399 16 1 -4.3671 -0.4116 4.1958 17 1 -4.1727 2.0021 4.3271 18 1 -3.3692 0.8259 2.3645 19 6 3.5413 -0.8366 1.1849 20 6 4.3327 0.2455 1.5221 21 6 5.7099 0.1384 1.4674 22 6 6.2953 -1.0478 1.0661 23 6 7.7966 -1.1632 1.0019 24 6 8.2218 -1.4945 -0.4300 25 6 8.4287 0.1636 1.4276 26 6 8.2634 -2.2757 1.9428 27 6 5.5039 -2.1284 0.7243 28 6 4.1268 -2.0226 0.7832 29 1 -0.3633 0.5495 -0.8683 30 1 -0.3633 -1.0268 -0.0416 31 1 -0.3633 0.4774 0.9101 32 1 1.8934 -0.5137 -0.8900 33 1 1.6767 1.9564 0.8901 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 0.8184 0.5758 2.2805 37 1 3.5499 -1.5047 3.5682 38 1 3.2519 -0.0902 4.6069 39 1 2.7404 -1.7100 5.1399 40 1 0.4477 -0.8437 5.4861 41 1 0.8985 0.7736 4.8951 42 1 -2.3440 1.5224 6.3103 43 1 3.8751 1.1737 1.8313 44 1 6.3282 0.9825 1.7348 45 1 7.8893 -0.7019 -1.1003 46 1 9.3077 -1.5775 -0.4766 47 1 7.7715 -2.4397 -0.7333 48 1 8.1257 0.3997 2.4476 49 1 9.5145 0.0802 1.3807 50 1 8.0961 0.9561 0.7571 51 1 7.8130 -3.2208 1.6396 52 1 9.3492 -2.3588 1.8967 53 1 7.9604 -2.0397 2.9630 54 1 5.9613 -3.0550 0.4104 55 1 3.5085 -2.8667 0.5158 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001617473686.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:42 Heat of formation + Delta-G solvation = -23.846682 kcal Electronic energy + Delta-G solvation = -28202.504188 eV Core-core repulsion = 24816.216587 eV Total energy + Delta-G solvation = -3386.287601 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 317.241 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.07115 -39.32449 -36.96931 -36.04794 -34.42076 -31.91883 -31.66582 -30.15645 -29.21903 -28.27347 -28.04186 -27.81898 -26.18149 -24.97145 -23.06545 -22.82147 -21.15832 -20.38848 -19.91488 -18.49213 -17.50134 -16.97489 -16.47747 -16.29870 -15.81923 -15.70457 -15.11293 -15.06695 -14.96597 -14.60213 -14.47217 -14.37776 -13.96607 -13.77787 -13.55939 -13.46333 -13.34813 -13.14572 -13.05413 -12.91674 -12.73720 -12.67259 -12.61514 -12.49732 -12.41314 -12.36202 -12.22197 -12.02295 -11.81987 -11.76459 -11.68970 -11.59631 -11.29984 -11.12420 -11.10181 -10.91873 -10.56584 -9.60872 -9.20423 -9.11130 -8.17746 -6.27600 0.60968 0.70194 1.39351 1.39723 1.50165 2.40430 2.99087 3.14026 3.46713 3.75536 3.92366 3.95503 4.03327 4.14617 4.19325 4.28253 4.33658 4.37091 4.42146 4.48273 4.59905 4.68169 4.71478 4.76539 4.77489 4.83537 4.85917 4.87167 4.94930 4.95040 4.98649 5.06522 5.07408 5.08029 5.09678 5.14242 5.20408 5.25567 5.26449 5.32774 5.35879 5.38416 5.41089 5.44868 5.49651 5.50131 5.57098 5.61741 5.75754 5.85722 5.90174 5.97014 6.23737 6.29757 6.51932 6.76741 6.87859 7.40917 8.93944 Molecular weight = 317.24amu Principal moments of inertia in cm(-1) A = 0.020182 B = 0.003274 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.049773 B = 8550.180482 C = 9214.868498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.084 4.084 3 C -0.141 4.141 4 C 0.128 3.872 5 H 0.035 0.965 6 N -0.668 5.668 7 C 0.103 3.897 8 H 0.019 0.981 9 C -0.121 4.121 10 C 0.029 3.971 11 C -0.527 4.527 12 H 0.060 0.940 13 C 0.006 3.994 14 N -0.930 5.930 15 Si 0.954 3.046 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.259 1.259 19 C -0.069 4.069 20 C -0.090 4.090 21 C -0.135 4.135 22 C -0.079 4.079 23 C -0.028 4.028 24 C -0.134 4.134 25 C -0.143 4.143 26 C -0.136 4.136 27 C -0.121 4.121 28 C -0.130 4.130 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.042 0.958 32 H 0.082 0.918 33 H 0.049 0.951 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.349 0.651 37 H 0.056 0.944 38 H 0.045 0.955 39 H 0.043 0.957 40 H -0.013 1.013 41 H -0.001 1.001 42 H 0.262 0.738 43 H 0.117 0.883 44 H 0.130 0.870 45 H 0.050 0.950 46 H 0.069 0.931 47 H 0.057 0.943 48 H 0.052 0.948 49 H 0.068 0.932 50 H 0.057 0.943 51 H 0.057 0.943 52 H 0.070 0.930 53 H 0.045 0.955 54 H 0.131 0.869 55 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.659 -4.490 -14.787 24.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.103 4.103 3 C -0.198 4.198 4 C 0.018 3.982 5 H 0.053 0.947 6 N -0.303 5.303 7 C -0.007 4.007 8 H 0.037 0.963 9 C -0.179 4.179 10 C -0.009 4.009 11 C -0.565 4.565 12 H 0.078 0.922 13 C -0.192 4.192 14 N -0.570 5.570 15 Si 0.780 3.220 16 H -0.204 1.204 17 H -0.211 1.211 18 H -0.183 1.183 19 C -0.070 4.070 20 C -0.108 4.108 21 C -0.153 4.153 22 C -0.079 4.079 23 C -0.028 4.028 24 C -0.191 4.191 25 C -0.200 4.200 26 C -0.193 4.193 27 C -0.139 4.139 28 C -0.148 4.148 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.100 0.900 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.172 0.828 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.006 0.994 41 H 0.017 0.983 42 H 0.070 0.930 43 H 0.135 0.865 44 H 0.148 0.852 45 H 0.069 0.931 46 H 0.088 0.912 47 H 0.076 0.924 48 H 0.071 0.929 49 H 0.087 0.913 50 H 0.076 0.924 51 H 0.076 0.924 52 H 0.089 0.911 53 H 0.064 0.936 54 H 0.149 0.851 55 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 19.201 -4.211 -14.491 24.422 hybrid contribution -2.238 -0.244 0.220 2.262 sum 16.964 -4.455 -14.271 22.611 Atomic orbital electron populations 1.21926 0.95455 1.01660 1.01990 1.21192 0.95089 0.97362 0.96673 1.21836 1.01464 0.95041 1.01441 1.20515 0.91855 0.95231 0.90609 0.94660 1.60596 1.41348 1.25581 1.02765 1.21395 0.94561 0.93103 0.91631 0.96345 1.21689 0.96599 1.00479 0.99159 1.19131 0.93399 0.94662 0.93666 1.21482 0.96691 1.35760 1.02574 0.92217 1.25850 1.02755 0.95250 0.95342 1.70099 1.34115 1.38951 1.13874 0.85605 0.79670 0.77367 0.79404 1.20387 1.21116 1.18282 1.19763 0.94531 0.93906 0.98778 1.21030 0.93173 0.98774 0.97864 1.21338 0.94512 0.98322 1.01118 1.19967 0.95595 0.93456 0.98902 1.19519 0.89803 0.96728 0.96777 1.21854 1.01649 1.01488 0.94110 1.21947 1.00918 0.96002 1.01108 1.21873 1.01548 0.97490 0.98437 1.20988 0.92851 0.98866 1.01160 1.21115 0.95402 0.97155 1.01153 0.91045 0.93059 0.93867 0.89974 0.93239 0.91921 0.92217 0.82848 0.92543 0.93588 0.93830 0.99427 0.98254 0.92955 0.86475 0.85241 0.93066 0.91208 0.92385 0.92898 0.91273 0.92379 0.92418 0.91115 0.93605 0.85114 0.86185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.40 9.07 71.98 0.65 -3.75 16 2 C -0.08 -2.30 2.66 -10.79 -0.03 -2.33 16 3 C -0.14 -3.71 8.13 71.98 0.58 -3.13 16 4 C 0.13 4.00 2.01 44.16 0.09 4.09 16 5 H 0.04 1.18 7.21 -2.39 -0.02 1.17 16 6 N -0.67 -25.06 4.69 -473.32 -2.22 -27.28 16 7 C 0.10 4.36 2.62 44.92 0.12 4.47 16 8 H 0.02 0.81 7.38 -2.39 -0.02 0.79 16 9 C -0.12 -4.59 9.15 71.98 0.66 -3.93 16 10 C 0.03 1.52 4.60 29.85 0.14 1.65 16 11 C -0.53 -28.90 7.98 25.60 0.20 -28.69 16 12 H 0.06 3.13 7.39 -2.91 -0.02 3.11 16 13 C 0.01 0.35 5.46 84.66 0.46 0.81 16 14 N -0.93 -56.28 13.29 21.45 0.28 -55.99 16 15 Si 0.95 43.73 29.54 68.60 2.03 45.76 16 16 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 17 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 18 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 19 C -0.07 -1.96 2.91 -19.87 -0.06 -2.02 16 20 C -0.09 -2.54 7.12 22.27 0.16 -2.38 16 21 C -0.14 -3.30 8.98 22.27 0.20 -3.10 16 22 C -0.08 -1.72 4.76 -19.87 -0.09 -1.82 16 23 C -0.03 -0.47 0.85 -52.92 -0.05 -0.51 16 24 C -0.13 -1.88 8.29 71.98 0.60 -1.29 16 25 C -0.14 -2.18 7.13 71.98 0.51 -1.67 16 26 C -0.14 -2.12 8.29 71.98 0.60 -1.52 16 27 C -0.12 -2.69 8.71 22.27 0.19 -2.49 16 28 C -0.13 -3.30 9.67 22.27 0.22 -3.09 16 29 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.04 1.49 6.25 -2.38 -0.01 1.47 16 32 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.05 1.49 7.06 -2.38 -0.02 1.48 16 34 H 0.06 1.61 5.55 -2.39 -0.01 1.60 16 35 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.35 14.40 4.23 -89.69 -0.38 14.02 16 37 H 0.06 1.97 6.35 -2.39 -0.02 1.95 16 38 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 39 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 40 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 41 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 42 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 43 H 0.12 3.60 6.77 -2.91 -0.02 3.58 16 44 H 0.13 2.81 5.90 -2.91 -0.02 2.79 16 45 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 47 H 0.06 0.79 7.39 -2.39 -0.02 0.78 16 48 H 0.05 0.88 7.51 -2.39 -0.02 0.86 16 49 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 50 H 0.06 0.89 7.51 -2.38 -0.02 0.87 16 51 H 0.06 0.87 7.39 -2.39 -0.02 0.86 16 52 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 53 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 54 H 0.13 2.37 7.10 -2.91 -0.02 2.35 16 55 H 0.12 2.80 8.04 -2.91 -0.02 2.78 16 Total: -1.00 -60.73 410.41 5.69 -55.04 By element: Atomic # 1 Polarization: 32.71 SS G_CDS: 0.45 Total: 33.16 kcal Atomic # 6 Polarization: -55.84 SS G_CDS: 5.15 Total: -50.68 kcal Atomic # 7 Polarization: -81.33 SS G_CDS: -1.94 Total: -83.27 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -60.73 5.69 -55.04 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001617473686.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.192 kcal (2) G-P(sol) polarization free energy of solvation -60.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds