Wall clock time and date at job start Tue Mar 31 2020 11:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.46968 * 2 1 4 4 H 1.09000 * 109.47045 * 302.78713 * 3 2 1 5 5 C 1.50705 * 109.47238 * 182.79129 * 3 2 1 6 6 H 1.07997 * 119.99677 * 245.69707 * 5 3 2 7 7 C 1.37879 * 119.99764 * 65.42074 * 5 3 2 8 8 N 1.31510 * 119.99527 * 193.44570 * 7 5 3 9 9 Si 1.86793 * 120.00285 * 13.45156 * 7 5 3 10 10 H 1.48507 * 109.47071 * 85.76631 * 9 7 5 11 11 H 1.48498 * 109.47103 * 205.76669 * 9 7 5 12 12 H 1.48505 * 109.47220 * 325.77005 * 9 7 5 13 13 N 1.46895 * 109.47237 * 62.79149 * 3 2 1 14 14 C 1.46901 * 111.00018 * 200.88113 * 13 3 2 15 15 H 1.08996 * 109.46772 * 329.00832 * 14 13 3 16 16 C 1.52998 * 109.47230 * 89.01017 * 14 13 3 17 17 C 1.52997 * 109.46843 * 209.01031 * 14 13 3 18 18 H 1.09004 * 109.47613 * 299.99477 * 17 14 13 19 19 C 1.52998 * 109.47218 * 59.99980 * 17 14 13 20 20 C 1.50705 * 109.47308 * 179.97438 * 17 14 13 21 21 C 1.38241 * 119.99828 * 299.72861 * 20 17 14 22 22 C 1.38227 * 119.99835 * 179.78572 * 21 20 17 23 23 C 1.38236 * 120.00169 * 0.46228 * 22 21 20 24 24 C 1.50700 * 120.00169 * 179.79132 * 23 22 21 25 25 C 1.52998 * 109.46906 * 269.97914 * 24 23 22 26 26 C 1.53004 * 109.46984 * 175.00135 * 25 24 23 27 27 C 1.53001 * 109.47128 * 294.99808 * 25 24 23 28 28 C 1.38234 * 120.00054 * 359.76885 * 23 22 21 29 29 C 1.38233 * 120.00225 * 119.99623 * 20 17 14 30 30 H 1.09000 * 109.46799 * 184.92349 * 1 2 3 31 31 H 1.09001 * 109.47114 * 304.92372 * 1 2 3 32 32 H 1.09005 * 109.47193 * 64.92640 * 1 2 3 33 33 H 1.09007 * 109.47403 * 240.00519 * 2 1 3 34 34 H 1.08995 * 109.47462 * 119.99844 * 2 1 3 35 35 H 0.97001 * 120.00142 * 180.02562 * 8 7 5 36 36 H 1.00900 * 111.00434 * 76.92121 * 13 3 2 37 37 H 1.08995 * 109.47137 * 65.10895 * 16 14 13 38 38 H 1.09001 * 109.46774 * 185.10537 * 16 14 13 39 39 H 1.08996 * 109.47548 * 305.10443 * 16 14 13 40 40 H 1.09002 * 109.47666 * 59.99910 * 19 17 14 41 41 H 1.08999 * 109.47428 * 180.02562 * 19 17 14 42 42 H 1.09002 * 109.47348 * 299.99619 * 19 17 14 43 43 H 1.08003 * 119.99570 * 359.97438 * 21 20 17 44 44 H 1.08006 * 120.00078 * 180.25260 * 22 21 20 45 45 H 1.08997 * 109.47135 * 29.97453 * 24 23 22 46 46 H 1.08998 * 109.47233 * 149.97924 * 24 23 22 47 47 H 1.08996 * 109.47449 * 55.00384 * 25 24 23 48 48 H 1.09003 * 109.47183 * 59.99748 * 26 25 24 49 49 H 1.08997 * 109.47105 * 180.02562 * 26 25 24 50 50 H 1.08999 * 109.46898 * 299.99600 * 26 25 24 51 51 H 1.08996 * 109.47291 * 60.00195 * 27 25 24 52 52 H 1.09001 * 109.47243 * 180.02562 * 27 25 24 53 53 H 1.09003 * 109.47150 * 300.00320 * 27 25 24 54 54 H 1.07993 * 120.00214 * 179.97438 * 28 23 22 55 55 H 1.08000 * 119.99851 * 359.97438 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6363 1.9706 -0.8639 5 6 3.5454 1.4432 -0.0692 6 1 4.1240 1.8145 0.7637 7 6 4.1840 0.9645 -1.1935 8 7 5.4750 0.7162 -1.1608 9 14 3.2155 0.6688 -2.7632 10 1 3.1349 1.9317 -3.5404 11 1 3.8963 -0.3705 -3.5765 12 1 1.8452 0.2103 -2.4204 13 7 1.6061 2.1153 1.2317 14 6 1.6276 3.5752 1.0697 15 1 2.4174 3.8516 0.3713 16 6 0.2777 4.0479 0.5263 17 6 1.8911 4.2348 2.4248 18 1 1.1013 3.9583 3.1233 19 6 3.2410 3.7620 2.9682 20 6 1.9138 5.7325 2.2587 21 6 2.8419 6.3209 1.4199 22 6 2.8598 7.6942 1.2641 23 6 1.9559 8.4800 1.9543 24 6 1.9785 9.9776 1.7881 25 6 2.9167 10.5921 2.8287 26 6 3.0368 12.0973 2.5815 27 6 2.3531 10.3490 4.2302 28 6 1.0309 7.8920 2.7967 29 6 1.0101 6.5183 2.9492 30 1 -0.3633 -1.0239 0.0882 31 1 -0.3633 0.5883 0.8426 32 1 -0.3634 0.4355 -0.9309 33 1 1.8934 -0.5138 -0.8901 34 1 1.8933 -0.5138 0.8899 35 1 5.9244 0.3798 -1.9518 36 1 2.1710 1.8303 2.0176 37 1 -0.4997 3.8529 1.2649 38 1 0.3233 5.1174 0.3207 39 1 0.0480 3.5105 -0.3937 40 1 4.0309 4.0385 2.2698 41 1 3.4286 4.2315 3.9338 42 1 3.2251 2.6788 3.0884 43 1 3.5510 5.7072 0.8841 44 1 3.5822 8.1536 0.6057 45 1 2.3324 10.2268 0.7877 46 1 0.9726 10.3738 1.9268 47 1 3.9010 10.1311 2.7479 48 1 2.0524 12.5585 2.6623 49 1 3.7055 12.5350 3.3226 50 1 3.4383 12.2705 1.5831 51 1 2.2675 9.2767 4.4064 52 1 3.0212 10.7871 4.9716 53 1 1.3687 10.8101 4.3111 54 1 0.3250 8.5059 3.3362 55 1 0.2876 6.0589 3.6074 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001621227614.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:35 Heat of formation + Delta-G solvation = -26.387349 kcal Electronic energy + Delta-G solvation = -27512.064799 eV Core-core repulsion = 24125.667027 eV Total energy + Delta-G solvation = -3386.397772 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 317.241 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.87634 -39.04683 -37.33368 -35.83835 -34.09306 -32.77712 -31.80538 -30.79821 -30.45814 -28.30562 -27.97064 -27.02414 -24.64954 -24.11552 -23.64719 -22.36722 -21.34750 -20.80027 -20.41575 -19.08535 -17.50207 -16.83018 -16.63247 -16.16252 -16.07140 -15.44657 -15.43183 -15.14481 -15.05278 -14.75720 -14.49271 -14.31884 -14.07773 -14.03311 -13.88652 -13.68784 -13.25431 -13.19393 -13.04041 -12.92228 -12.91577 -12.76116 -12.63172 -12.48672 -12.36320 -12.24563 -12.04435 -11.98633 -11.78602 -11.60184 -11.51707 -11.49438 -11.38419 -11.32712 -11.23448 -10.95737 -10.59317 -9.73091 -9.30338 -8.96451 -8.31883 -6.31252 0.50478 0.57839 1.30815 1.35016 1.43896 2.33385 2.88931 3.04420 3.53251 3.82539 3.87668 3.97670 4.04025 4.12390 4.17975 4.22054 4.27137 4.42376 4.47992 4.50911 4.59101 4.61395 4.63905 4.67723 4.75189 4.80271 4.83805 4.87992 4.89989 4.93149 4.95967 4.99749 5.02438 5.08820 5.10231 5.14058 5.17617 5.21769 5.26071 5.28751 5.33106 5.36510 5.39040 5.47038 5.49856 5.51998 5.55481 5.59820 5.63684 5.75976 5.80737 5.88046 6.17478 6.20882 6.47595 6.72958 6.88495 7.36383 8.84345 Molecular weight = 317.24amu Principal moments of inertia in cm(-1) A = 0.018218 B = 0.002976 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.551953 B = 9406.519997 C = 9993.314621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 C 0.195 3.805 4 H 0.019 0.981 5 C -0.541 4.541 6 H 0.035 0.965 7 C 0.021 3.979 8 N -0.943 5.943 9 Si 0.917 3.083 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.220 1.220 13 N -0.666 5.666 14 C 0.097 3.903 15 H 0.016 0.984 16 C -0.122 4.122 17 C -0.043 4.043 18 H 0.095 0.905 19 C -0.138 4.138 20 C -0.073 4.073 21 C -0.128 4.128 22 C -0.127 4.127 23 C -0.087 4.087 24 C -0.072 4.072 25 C -0.091 4.091 26 C -0.145 4.145 27 C -0.149 4.149 28 C -0.113 4.113 29 C -0.116 4.116 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.038 0.962 33 H 0.041 0.959 34 H 0.045 0.955 35 H 0.262 0.738 36 H 0.332 0.668 37 H 0.068 0.932 38 H 0.052 0.948 39 H 0.037 0.963 40 H 0.031 0.969 41 H 0.068 0.932 42 H 0.053 0.947 43 H 0.095 0.905 44 H 0.121 0.879 45 H 0.071 0.929 46 H 0.083 0.917 47 H 0.055 0.945 48 H 0.063 0.937 49 H 0.057 0.943 50 H 0.055 0.945 51 H 0.050 0.950 52 H 0.053 0.947 53 H 0.064 0.936 54 H 0.142 0.858 55 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.578 18.727 9.258 23.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.154 4.154 3 C 0.085 3.915 4 H 0.037 0.963 5 C -0.579 4.579 6 H 0.054 0.946 7 C -0.177 4.177 8 N -0.583 5.583 9 Si 0.742 3.258 10 H -0.208 1.208 11 H -0.217 1.217 12 H -0.143 1.143 13 N -0.296 5.296 14 C -0.013 4.013 15 H 0.034 0.966 16 C -0.180 4.180 17 C -0.062 4.062 18 H 0.113 0.887 19 C -0.196 4.196 20 C -0.073 4.073 21 C -0.147 4.147 22 C -0.145 4.145 23 C -0.087 4.087 24 C -0.109 4.109 25 C -0.109 4.109 26 C -0.202 4.202 27 C -0.206 4.206 28 C -0.131 4.131 29 C -0.134 4.134 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.151 0.849 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.114 0.886 44 H 0.139 0.861 45 H 0.090 0.910 46 H 0.102 0.898 47 H 0.074 0.926 48 H 0.082 0.918 49 H 0.076 0.924 50 H 0.074 0.926 51 H 0.069 0.931 52 H 0.073 0.927 53 H 0.083 0.917 54 H 0.160 0.840 55 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -12.118 18.599 9.019 23.960 hybrid contribution 1.874 -0.458 -1.203 2.274 sum -10.244 18.140 7.815 22.251 Atomic orbital electron populations 1.21632 0.94949 1.00879 1.01542 1.21812 0.96069 0.97530 0.99953 1.19330 0.90653 0.91873 0.89667 0.96296 1.22038 0.92744 1.41134 1.02032 0.94632 1.25739 0.95422 0.94399 1.02130 1.70114 1.11591 1.46300 1.30279 0.86381 0.81878 0.77873 0.79688 1.20752 1.21676 1.14282 1.60920 1.57744 1.04945 1.06039 1.21395 0.96563 0.88188 0.95188 0.96590 1.21652 0.96579 0.99307 1.00493 1.20247 0.98212 0.90926 0.96772 0.88683 1.21802 0.96296 1.00831 1.00662 1.19740 0.95885 0.94749 0.96957 1.21013 0.99134 0.95275 0.99236 1.21109 0.99699 0.93111 1.00548 1.20016 0.95549 0.96346 0.96760 1.20683 1.01114 0.89501 0.99585 1.21057 0.98394 0.96302 0.95159 1.21827 1.02279 0.94395 1.01681 1.21902 1.01304 1.01609 0.95765 1.21222 0.98896 0.94436 0.98506 1.21235 0.98570 0.93910 0.99716 0.92887 0.91217 0.94300 0.94077 0.93571 0.92874 0.84876 0.91306 0.92913 0.94342 0.94942 0.91295 0.92806 0.88645 0.86105 0.91042 0.89805 0.92598 0.91840 0.92399 0.92629 0.93130 0.92742 0.91696 0.84042 0.84450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.53 9.85 71.98 0.71 -3.82 16 2 C -0.12 -4.86 4.98 30.59 0.15 -4.70 16 3 C 0.19 8.89 1.40 44.17 0.06 8.95 16 4 H 0.02 0.91 6.16 -2.39 -0.01 0.90 16 5 C -0.54 -30.02 8.53 25.60 0.22 -29.80 16 6 H 0.04 2.18 8.01 -2.91 -0.02 2.16 16 7 C 0.02 1.24 5.37 84.66 0.45 1.69 16 8 N -0.94 -58.88 13.96 21.45 0.30 -58.58 16 9 Si 0.92 44.00 25.87 68.60 1.77 45.77 16 10 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 11 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 12 H -0.22 -9.56 5.31 99.48 0.53 -9.03 16 13 N -0.67 -25.83 5.32 -473.31 -2.52 -28.35 16 14 C 0.10 3.46 1.83 44.91 0.08 3.54 16 15 H 0.02 0.70 6.71 -2.39 -0.02 0.68 16 16 C -0.12 -3.85 9.11 71.98 0.66 -3.19 16 17 C -0.04 -1.27 2.27 -11.54 -0.03 -1.30 16 18 H 0.09 2.51 7.88 -2.39 -0.02 2.49 16 19 C -0.14 -4.46 8.78 71.98 0.63 -3.83 16 20 C -0.07 -2.01 3.61 -19.86 -0.07 -2.08 16 21 C -0.13 -3.88 8.71 22.27 0.19 -3.68 16 22 C -0.13 -3.25 9.70 22.27 0.22 -3.04 16 23 C -0.09 -1.82 4.71 -19.87 -0.09 -1.92 16 24 C -0.07 -1.13 4.84 29.85 0.14 -0.99 16 25 C -0.09 -1.35 2.91 -10.79 -0.03 -1.38 16 26 C -0.14 -1.72 9.19 71.98 0.66 -1.06 16 27 C -0.15 -2.09 8.76 71.98 0.63 -1.46 16 28 C -0.11 -2.23 7.96 22.27 0.18 -2.05 16 29 C -0.12 -2.61 9.67 22.27 0.22 -2.39 16 30 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.07 2.28 7.55 -2.39 -0.02 2.27 16 32 H 0.04 1.29 8.14 -2.38 -0.02 1.28 16 33 H 0.04 1.82 4.67 -2.38 -0.01 1.81 16 34 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 36 H 0.33 13.13 5.91 -89.69 -0.53 12.60 16 37 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.05 1.57 7.41 -2.39 -0.02 1.55 16 39 H 0.04 1.29 7.65 -2.39 -0.02 1.27 16 40 H 0.03 1.20 7.37 -2.39 -0.02 1.18 16 41 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.05 1.82 6.22 -2.39 -0.01 1.81 16 43 H 0.10 3.35 7.10 -2.91 -0.02 3.33 16 44 H 0.12 2.86 8.06 -2.91 -0.02 2.83 16 45 H 0.07 1.12 8.09 -2.39 -0.02 1.10 16 46 H 0.08 1.11 8.09 -2.39 -0.02 1.09 16 47 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 49 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 51 H 0.05 0.83 6.27 -2.39 -0.01 0.82 16 52 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 53 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 54 H 0.14 2.06 8.04 -2.91 -0.02 2.04 16 55 H 0.14 2.51 7.95 -2.91 -0.02 2.49 16 Total: -1.00 -63.29 413.85 4.65 -58.64 By element: Atomic # 1 Polarization: 34.93 SS G_CDS: 0.11 Total: 35.04 kcal Atomic # 6 Polarization: -57.50 SS G_CDS: 4.98 Total: -52.52 kcal Atomic # 7 Polarization: -84.71 SS G_CDS: -2.22 Total: -86.93 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.77 Total: 45.77 kcal Total: -63.29 4.65 -58.64 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001621227614.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.255 kcal (2) G-P(sol) polarization free energy of solvation -63.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds