Wall clock time and date at job start Tue Mar 31 2020 11:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46989 * 2 1 4 4 H 1.09003 * 109.47340 * 305.64237 * 3 2 1 5 5 C 1.50698 * 109.46946 * 185.64147 * 3 2 1 6 6 H 1.08000 * 120.00303 * 240.00106 * 5 3 2 7 7 C 1.37882 * 119.99862 * 59.72684 * 5 3 2 8 8 N 1.31513 * 120.00099 * 0.27282 * 7 5 3 9 9 Si 1.86803 * 119.99958 * 180.27631 * 7 5 3 10 10 H 1.48501 * 109.47079 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47190 * 119.99889 * 9 7 5 12 12 H 1.48507 * 109.46833 * 239.99890 * 9 7 5 13 13 N 1.46898 * 109.47041 * 65.64280 * 3 2 1 14 14 C 1.46902 * 110.99946 * 205.22197 * 13 3 2 15 15 C 1.52998 * 109.47426 * 185.20512 * 14 13 3 16 16 H 1.09007 * 109.46781 * 305.00335 * 15 14 13 17 17 C 1.53001 * 109.47017 * 64.99573 * 15 14 13 18 18 C 1.52991 * 109.47363 * 185.00065 * 15 14 13 19 19 C 1.50701 * 109.47235 * 174.99941 * 18 15 14 20 20 C 1.38241 * 119.99833 * 269.72233 * 19 18 15 21 21 C 1.38239 * 119.99773 * 179.76273 * 20 19 18 22 22 C 1.38227 * 119.99939 * 0.51382 * 21 20 19 23 23 C 1.50700 * 120.00053 * 179.72420 * 22 21 20 24 24 C 1.53005 * 109.47201 * 240.02315 * 23 22 21 25 25 C 1.53000 * 109.47119 * 0.02562 * 23 22 21 26 26 C 1.52997 * 109.47523 * 120.02270 * 23 22 21 27 27 C 1.38241 * 120.00256 * 359.74089 * 22 21 20 28 28 C 1.38229 * 120.00349 * 90.00166 * 19 18 15 29 29 H 1.08995 * 109.47401 * 54.41174 * 1 2 3 30 30 H 1.08994 * 109.47085 * 174.41766 * 1 2 3 31 31 H 1.09011 * 109.47031 * 294.41301 * 1 2 3 32 32 H 1.08995 * 109.46958 * 240.00252 * 2 1 3 33 33 H 1.08997 * 109.47034 * 120.00152 * 2 1 3 34 34 H 0.97000 * 120.00129 * 180.02562 * 8 7 5 35 35 H 1.00900 * 111.00046 * 329.17332 * 13 3 2 36 36 H 1.09002 * 109.46890 * 305.20490 * 14 13 3 37 37 H 1.09001 * 109.47037 * 65.20398 * 14 13 3 38 38 H 1.09002 * 109.46987 * 179.97438 * 17 15 14 39 39 H 1.08999 * 109.47577 * 300.00388 * 17 15 14 40 40 H 1.09007 * 109.46723 * 60.00726 * 17 15 14 41 41 H 1.09003 * 109.47246 * 295.00198 * 18 15 14 42 42 H 1.09004 * 109.47142 * 54.99918 * 18 15 14 43 43 H 1.08000 * 120.00011 * 0.02562 * 20 19 18 44 44 H 1.08003 * 119.99842 * 180.23589 * 21 20 19 45 45 H 1.09000 * 109.47152 * 59.99192 * 24 23 22 46 46 H 1.08994 * 109.47715 * 179.97438 * 24 23 22 47 47 H 1.09003 * 109.46670 * 299.99899 * 24 23 22 48 48 H 1.08998 * 109.46539 * 60.00060 * 25 23 22 49 49 H 1.08995 * 109.47357 * 180.02562 * 25 23 22 50 50 H 1.09000 * 109.46854 * 300.00575 * 25 23 22 51 51 H 1.09003 * 109.47193 * 59.99584 * 26 23 22 52 52 H 1.08995 * 109.47208 * 180.02562 * 26 23 22 53 53 H 1.09005 * 109.46734 * 300.00087 * 26 23 22 54 54 H 1.07994 * 119.99977 * 179.97438 * 27 22 21 55 55 H 1.08002 * 119.99699 * 359.97438 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9847 -0.8352 5 6 3.5405 1.4448 -0.1397 6 1 4.1540 1.8865 0.6317 7 6 4.1304 0.8780 -1.2496 8 7 3.3834 0.3401 -2.1888 9 14 5.9907 0.8739 -1.4190 10 1 6.5970 1.5363 -0.2362 11 1 6.4768 -0.5265 -1.5060 12 1 6.3772 1.6095 -2.6499 13 7 1.6647 2.0946 1.2617 14 6 1.5789 3.5517 1.0961 15 6 1.3146 4.2047 2.4542 16 1 0.4232 3.7649 2.9015 17 6 2.5147 3.9718 3.3743 18 6 1.1015 5.7078 2.2646 19 6 0.7203 6.3314 3.5825 20 6 -0.6110 6.4280 3.9421 21 6 -0.9603 6.9956 5.1533 22 6 0.0210 7.4761 6.0000 23 6 -0.3602 8.1004 7.3175 24 6 0.1346 9.5477 7.3582 25 6 -1.8822 8.0772 7.4715 26 6 0.2801 7.3103 8.4606 27 6 1.3520 7.3842 5.6381 28 6 1.7016 6.8119 4.4293 29 1 -0.3634 0.5980 -0.8357 30 1 -0.3633 -1.0227 -0.1000 31 1 -0.3634 0.4248 0.9359 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.7984 -0.0589 -2.9695 35 1 0.7986 1.7197 1.6188 36 1 2.5179 3.9270 0.6891 37 1 0.7646 3.7924 0.4126 38 1 2.3266 4.4374 4.3417 39 1 2.6665 2.9009 3.5094 40 1 3.4061 4.4117 2.9270 41 1 2.0228 6.1624 1.9005 42 1 0.3038 5.8731 1.5402 43 1 -1.3779 6.0563 3.2788 44 1 -2.0002 7.0677 5.4359 45 1 -0.3214 10.1106 6.5438 46 1 -0.1414 9.9995 8.3109 47 1 1.2190 9.5641 7.2485 48 1 -2.2346 7.0462 7.4426 49 1 -2.1580 8.5292 8.4243 50 1 -2.3384 8.6401 6.6572 51 1 1.3645 7.3267 8.3509 52 1 0.0040 7.7617 9.4135 53 1 -0.0724 6.2792 8.4316 54 1 2.1186 7.7600 6.2994 55 1 2.7414 6.7401 4.1465 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001657118977.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:12 Heat of formation + Delta-G solvation = -28.451950 kcal Electronic energy + Delta-G solvation = -26699.171965 eV Core-core repulsion = 23312.684664 eV Total energy + Delta-G solvation = -3386.487300 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 317.241 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.89370 -38.85451 -37.68896 -36.00382 -34.03130 -32.53120 -31.96372 -30.71067 -28.57239 -28.19117 -28.07105 -27.53865 -25.86505 -24.31628 -23.17076 -22.65707 -21.57312 -20.70771 -20.00640 -18.36334 -17.41954 -16.77965 -16.44559 -16.22269 -15.95357 -15.63008 -15.51551 -15.11405 -14.92784 -14.73196 -14.53591 -14.50048 -14.22294 -13.84658 -13.65738 -13.45687 -13.19865 -13.12507 -12.96495 -12.88480 -12.77428 -12.70266 -12.52250 -12.52063 -12.49103 -12.20729 -12.05282 -11.96220 -11.90132 -11.68992 -11.55011 -11.52016 -11.46934 -11.28975 -11.06109 -10.98622 -10.42483 -9.71632 -9.29001 -8.93831 -8.05971 -6.17444 0.51322 0.58756 1.39196 1.41368 1.53218 2.43998 2.89543 3.18833 3.62098 3.73695 3.84932 3.96027 4.03578 4.15754 4.21811 4.25251 4.36146 4.43691 4.44621 4.49763 4.57354 4.59687 4.64883 4.70481 4.73546 4.80906 4.81126 4.88449 4.92672 4.95426 4.97846 5.03990 5.06100 5.07510 5.10955 5.14344 5.17566 5.23295 5.25646 5.27697 5.34243 5.38590 5.41147 5.46707 5.48744 5.58655 5.61931 5.67277 5.76597 5.81797 5.85657 5.91628 6.21014 6.38459 6.54571 6.96962 7.04515 7.51484 8.97343 Molecular weight = 317.24amu Principal moments of inertia in cm(-1) A = 0.021507 B = 0.002321 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.607490 B =12061.767790 C =12758.834946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.121 4.121 3 C 0.225 3.775 4 H -0.035 1.035 5 C -0.506 4.506 6 H 0.048 0.952 7 C 0.007 3.993 8 N -0.921 5.921 9 Si 0.954 3.046 10 H -0.271 1.271 11 H -0.280 1.280 12 H -0.282 1.282 13 N -0.683 5.683 14 C 0.077 3.923 15 C -0.065 4.065 16 H 0.067 0.933 17 C -0.127 4.127 18 C -0.072 4.072 19 C -0.084 4.084 20 C -0.126 4.126 21 C -0.126 4.126 22 C -0.082 4.082 23 C -0.030 4.030 24 C -0.136 4.136 25 C -0.143 4.143 26 C -0.137 4.137 27 C -0.121 4.121 28 C -0.122 4.122 29 H 0.035 0.965 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.036 0.964 34 H 0.259 0.741 35 H 0.326 0.674 36 H 0.047 0.953 37 H 0.012 0.988 38 H 0.058 0.942 39 H 0.047 0.953 40 H 0.040 0.960 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.126 0.874 44 H 0.138 0.862 45 H 0.050 0.950 46 H 0.069 0.931 47 H 0.055 0.945 48 H 0.056 0.944 49 H 0.068 0.932 50 H 0.058 0.942 51 H 0.055 0.945 52 H 0.069 0.931 53 H 0.048 0.952 54 H 0.130 0.870 55 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.128 16.741 19.343 27.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.160 4.160 3 C 0.116 3.884 4 H -0.017 1.017 5 C -0.544 4.544 6 H 0.067 0.933 7 C -0.191 4.191 8 N -0.561 5.561 9 Si 0.780 3.220 10 H -0.195 1.195 11 H -0.206 1.206 12 H -0.208 1.208 13 N -0.314 5.314 14 C -0.053 4.053 15 C -0.084 4.084 16 H 0.085 0.915 17 C -0.184 4.184 18 C -0.110 4.110 19 C -0.084 4.084 20 C -0.144 4.144 21 C -0.144 4.144 22 C -0.082 4.082 23 C -0.030 4.030 24 C -0.193 4.193 25 C -0.200 4.200 26 C -0.195 4.195 27 C -0.139 4.139 28 C -0.140 4.140 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.144 0.856 36 H 0.066 0.934 37 H 0.030 0.970 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.144 0.856 44 H 0.155 0.845 45 H 0.070 0.930 46 H 0.088 0.912 47 H 0.074 0.926 48 H 0.075 0.925 49 H 0.087 0.913 50 H 0.077 0.923 51 H 0.074 0.926 52 H 0.088 0.912 53 H 0.067 0.933 54 H 0.148 0.852 55 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.458 16.668 19.411 27.278 hybrid contribution 0.360 -0.293 -1.336 1.415 sum -9.097 16.375 18.075 26.031 Atomic orbital electron populations 1.21741 0.96287 1.01078 1.00466 1.21591 0.94229 0.99023 1.01158 1.18923 0.94017 0.90629 0.84804 1.01705 1.21487 0.92834 1.36041 1.04078 0.93325 1.25687 1.02204 0.95487 0.95685 1.70009 1.36068 1.40047 1.10022 0.85567 0.80963 0.77687 0.77767 1.19546 1.20590 1.20788 1.60540 1.36699 1.03517 1.30656 1.21847 0.98751 0.88843 0.95873 1.20935 0.98880 0.93920 0.94640 0.91456 1.21644 0.96884 1.01405 0.98507 1.20589 1.02021 0.94145 0.94230 1.19862 0.93730 0.98481 0.96349 1.21223 0.95683 1.00080 0.97440 1.21349 1.00208 0.98951 0.93907 1.20022 0.93112 0.98697 0.96328 1.19537 0.96579 0.95496 0.91349 1.21872 1.01124 0.94133 1.02198 1.21951 0.93651 1.02032 1.02355 1.21882 1.00541 0.99596 0.97433 1.21109 0.96285 0.99931 0.96540 1.21173 0.99296 0.98859 0.94680 0.94594 0.92448 0.92329 0.91450 0.94518 0.93141 0.85593 0.93426 0.97002 0.92285 0.93340 0.94038 0.91260 0.90867 0.85616 0.84451 0.93041 0.91186 0.92561 0.92452 0.91338 0.92267 0.92585 0.91153 0.93253 0.85241 0.86030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.26 9.65 71.98 0.69 -4.56 16 2 C -0.12 -5.82 5.36 30.60 0.16 -5.65 16 3 C 0.22 11.46 2.02 44.17 0.09 11.55 16 4 H -0.03 -1.97 7.85 -2.39 -0.02 -1.99 16 5 C -0.51 -28.62 8.55 25.60 0.22 -28.40 16 6 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 7 C 0.01 0.40 5.29 84.66 0.45 0.85 16 8 N -0.92 -53.77 11.28 21.45 0.24 -53.53 16 9 Si 0.95 44.94 29.54 68.60 2.03 46.97 16 10 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 N -0.68 -28.97 5.72 -495.44 -2.84 -31.80 16 14 C 0.08 2.89 4.84 86.30 0.42 3.31 16 15 C -0.06 -1.92 2.56 -10.80 -0.03 -1.95 16 16 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 17 C -0.13 -3.88 8.65 71.98 0.62 -3.25 16 18 C -0.07 -1.83 4.84 29.85 0.14 -1.68 16 19 C -0.08 -1.97 4.71 -19.87 -0.09 -2.06 16 20 C -0.13 -2.72 9.70 22.27 0.22 -2.50 16 21 C -0.13 -2.42 8.98 22.27 0.20 -2.22 16 22 C -0.08 -1.49 4.76 -19.87 -0.09 -1.59 16 23 C -0.03 -0.41 0.85 -52.93 -0.05 -0.45 16 24 C -0.14 -1.65 8.29 71.98 0.60 -1.06 16 25 C -0.14 -1.66 7.13 71.98 0.51 -1.15 16 26 C -0.14 -1.78 8.29 71.98 0.60 -1.18 16 27 C -0.12 -2.37 8.71 22.27 0.19 -2.18 16 28 C -0.12 -2.72 7.96 22.27 0.18 -2.54 16 29 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.06 1.94 6.65 -2.38 -0.02 1.92 16 32 H 0.07 3.68 5.93 -2.39 -0.01 3.66 16 33 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 35 H 0.33 12.44 6.65 -89.69 -0.60 11.85 16 36 H 0.05 2.03 7.92 -2.39 -0.02 2.01 16 37 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.06 1.59 6.26 -2.39 -0.01 1.58 16 39 H 0.05 1.67 7.75 -2.39 -0.02 1.65 16 40 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.07 1.78 8.09 -2.39 -0.02 1.76 16 42 H 0.07 1.77 8.08 -2.38 -0.02 1.75 16 43 H 0.13 2.44 8.06 -2.91 -0.02 2.41 16 44 H 0.14 2.12 5.90 -2.91 -0.02 2.10 16 45 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.06 0.69 7.39 -2.39 -0.02 0.67 16 48 H 0.06 0.69 7.51 -2.39 -0.02 0.67 16 49 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 50 H 0.06 0.68 7.51 -2.39 -0.02 0.66 16 51 H 0.06 0.74 7.39 -2.39 -0.02 0.72 16 52 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 53 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 54 H 0.13 2.12 7.10 -2.91 -0.02 2.10 16 55 H 0.12 2.60 8.04 -2.91 -0.02 2.58 16 Total: -1.00 -61.61 418.78 4.69 -56.92 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: 0.22 Total: 28.17 kcal Atomic # 6 Polarization: -51.76 SS G_CDS: 5.03 Total: -46.73 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -2.59 Total: -85.33 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -61.61 4.69 -56.92 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657118977.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.472 kcal (2) G-P(sol) polarization free energy of solvation -61.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds