Wall clock time and date at job start Tue Mar 31 2020 11:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47394 * 2 1 4 4 C 1.53000 * 109.47272 * 172.62445 * 3 2 1 5 5 C 1.53004 * 109.46845 * 185.00097 * 4 3 2 6 6 C 1.53000 * 109.47338 * 292.63278 * 3 2 1 7 7 N 1.46896 * 109.47194 * 66.93266 * 6 3 2 8 8 C 1.46897 * 111.00281 * 86.89317 * 7 6 3 9 9 C 1.50700 * 109.47359 * 285.27272 * 8 7 6 10 10 H 1.07997 * 119.99621 * 358.68439 * 9 8 7 11 11 C 1.37880 * 119.99946 * 178.68956 * 9 8 7 12 12 N 1.31513 * 119.99820 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 120.00078 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.47322 * 90.00022 * 13 11 9 15 15 H 1.48498 * 109.47271 * 210.00309 * 13 11 9 16 16 H 1.48507 * 109.47110 * 330.00220 * 13 11 9 17 17 C 1.46899 * 111.00003 * 210.84946 * 7 6 3 18 18 C 1.53001 * 109.47149 * 66.04461 * 17 7 6 19 19 C 1.53000 * 109.47351 * 180.02562 * 18 17 7 20 20 H 1.08999 * 109.46830 * 55.00225 * 19 18 17 21 21 C 1.53005 * 109.46959 * 294.99981 * 19 18 17 22 22 C 1.50705 * 109.47272 * 175.00018 * 19 18 17 23 23 C 1.38230 * 119.99884 * 59.72762 * 22 19 18 24 24 C 1.38240 * 119.99958 * 179.80933 * 23 22 19 25 25 C 1.38236 * 119.99754 * 0.40153 * 24 23 22 26 26 C 1.38234 * 119.99801 * 359.84776 * 25 24 23 27 27 C 1.38231 * 120.00360 * 359.96664 * 26 25 24 28 28 H 1.09006 * 109.47157 * 178.64528 * 1 2 3 29 29 H 1.09001 * 109.47534 * 298.64818 * 1 2 3 30 30 H 1.09003 * 109.47458 * 58.64918 * 1 2 3 31 31 H 1.09007 * 109.47330 * 240.00502 * 2 1 3 32 32 H 1.08996 * 109.47846 * 120.00464 * 2 1 3 33 33 H 1.09007 * 109.46831 * 52.62893 * 3 2 1 34 34 H 1.08988 * 109.47389 * 305.00523 * 4 3 2 35 35 H 1.09004 * 109.46642 * 65.00610 * 4 3 2 36 36 H 1.09004 * 109.47081 * 60.00782 * 5 4 3 37 37 H 1.08997 * 109.46718 * 180.02562 * 5 4 3 38 38 H 1.09002 * 109.47482 * 300.00557 * 5 4 3 39 39 H 1.08995 * 109.46888 * 306.93303 * 6 3 2 40 40 H 1.08997 * 109.47223 * 186.93236 * 6 3 2 41 41 H 1.09000 * 109.46744 * 45.27580 * 8 7 6 42 42 H 1.08999 * 109.47167 * 165.26777 * 8 7 6 43 43 H 0.96996 * 119.99792 * 179.97438 * 12 11 9 44 44 H 1.08995 * 109.47326 * 306.04920 * 17 7 6 45 45 H 1.08999 * 109.47656 * 186.04250 * 17 7 6 46 46 H 1.09005 * 109.47164 * 60.00034 * 18 17 7 47 47 H 1.09000 * 109.47551 * 300.00163 * 18 17 7 48 48 H 1.08998 * 109.46562 * 179.97438 * 21 19 18 49 49 H 1.08994 * 109.46856 * 299.99802 * 21 19 18 50 50 H 1.09000 * 109.46797 * 60.00477 * 21 19 18 51 51 H 1.08001 * 120.00162 * 359.97438 * 23 22 19 52 52 H 1.07997 * 120.00176 * 180.22740 * 24 23 22 53 53 H 1.08000 * 119.99907 * 179.83850 * 25 24 23 54 54 H 1.07998 * 119.99461 * 179.97438 * 26 25 24 55 55 H 1.08003 * 120.00042 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5588 1.4465 0.1852 5 6 4.0535 2.8889 0.3101 6 6 1.6867 2.1084 -1.3314 7 7 0.2286 2.2545 -1.4341 8 6 -0.2203 3.5062 -0.8100 9 6 -0.1694 3.3664 0.6896 10 1 0.1429 2.4333 1.1346 11 6 -0.5217 4.4298 1.4935 12 7 -0.4768 4.3079 2.8022 13 14 -1.0614 6.0440 0.7237 14 1 -2.5327 6.0292 0.5230 15 1 -0.6957 7.1679 1.6228 16 1 -0.3848 6.2181 -0.5868 17 6 -0.2109 2.1768 -2.8337 18 6 0.0529 0.7698 -3.3737 19 6 -0.4043 0.6890 -4.8315 20 1 0.0828 1.4746 -5.4091 21 6 -1.9219 0.8712 -4.9009 22 6 -0.0334 -0.6563 -5.4006 23 6 -0.5303 -1.8108 -4.8254 24 6 -0.1932 -3.0447 -5.3497 25 6 0.6475 -3.1243 -6.4442 26 6 1.1485 -1.9698 -7.0161 27 6 0.8084 -0.7359 -6.4942 28 1 -0.3634 -1.0274 -0.0243 29 1 -0.3634 0.4927 0.9018 30 1 -0.3634 0.5347 -0.8776 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.5730 1.9930 0.8168 34 1 3.8160 0.8945 1.0891 35 1 4.0309 0.9737 -0.6761 36 1 3.5813 3.3617 1.1713 37 1 5.1355 2.8917 0.4416 38 1 3.7962 3.4409 -0.5939 39 1 2.0489 1.4914 -2.1536 40 1 2.1548 3.0915 -1.3814 41 1 0.4323 4.3219 -1.1213 42 1 -1.2430 3.7206 -1.1205 43 1 -0.7242 5.0561 3.3677 44 1 0.3415 2.9038 -3.4289 45 1 -1.2774 2.3943 -2.8922 46 1 -0.4995 0.0426 -2.7785 47 1 1.1194 0.5521 -3.3152 48 1 -2.2475 0.8141 -5.9396 49 1 -2.4089 0.0856 -4.3233 50 1 -2.1901 1.8443 -4.4895 51 1 -1.1841 -1.7488 -3.9680 52 1 -0.5844 -3.9466 -4.9026 53 1 0.9129 -4.0883 -6.8522 54 1 1.8057 -2.0321 -7.8709 55 1 1.2002 0.1660 -6.9408 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001657303986.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:15 Heat of formation + Delta-G solvation = -1.944273 kcal Electronic energy + Delta-G solvation = -28197.925470 eV Core-core repulsion = 24812.587629 eV Total energy + Delta-G solvation = -3385.337841 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 317.241 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.51641 -39.67724 -36.98447 -35.71175 -34.42659 -32.69542 -31.72550 -31.38677 -29.94345 -28.99851 -27.56737 -25.83189 -24.78090 -23.55880 -22.92949 -22.61388 -21.68290 -20.91487 -20.58819 -18.58660 -17.70751 -16.91412 -16.68581 -16.27466 -16.16834 -15.58907 -15.50907 -15.11591 -14.82474 -14.65322 -14.51755 -14.46327 -14.14820 -14.10284 -13.83138 -13.68406 -13.39153 -13.23247 -13.07127 -13.04871 -12.80165 -12.68762 -12.42574 -12.24467 -12.19501 -12.06151 -12.01894 -11.93923 -11.70477 -11.66000 -11.52684 -11.33474 -11.20965 -11.05838 -10.97432 -10.70039 -10.41313 -9.73484 -9.50160 -8.62431 -8.14292 -6.13655 0.54507 0.58546 1.34754 1.37046 1.44970 2.40481 2.95268 3.17008 3.26424 3.78582 3.92621 4.06863 4.15851 4.20205 4.23243 4.27980 4.36022 4.40064 4.45381 4.53757 4.56242 4.63557 4.68825 4.71728 4.75452 4.78430 4.80209 4.80293 4.89133 4.94572 4.98222 5.07324 5.07986 5.11494 5.14825 5.20707 5.24552 5.26074 5.26476 5.34929 5.38254 5.42532 5.46130 5.47792 5.55619 5.64823 5.67728 5.67981 5.71233 5.86268 5.92312 6.19291 6.21169 6.23857 6.54140 6.79173 7.00829 7.48037 8.99735 Molecular weight = 317.24amu Principal moments of inertia in cm(-1) A = 0.014274 B = 0.003642 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.142497 B = 7687.259648 C = 8578.576241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.090 4.090 3 C -0.102 4.102 4 C -0.110 4.110 5 C -0.146 4.146 6 C 0.078 3.922 7 N -0.521 5.521 8 C 0.168 3.832 9 C -0.497 4.497 10 H 0.077 0.923 11 C 0.009 3.991 12 N -0.949 5.949 13 Si 0.927 3.073 14 H -0.271 1.271 15 H -0.291 1.291 16 H -0.256 1.256 17 C 0.048 3.952 18 C -0.094 4.094 19 C -0.046 4.046 20 H 0.080 0.920 21 C -0.142 4.142 22 C -0.079 4.079 23 C -0.126 4.126 24 C -0.129 4.129 25 C -0.135 4.135 26 C -0.127 4.127 27 C -0.131 4.131 28 H 0.031 0.969 29 H 0.014 0.986 30 H 0.111 0.889 31 H 0.060 0.940 32 H 0.038 0.962 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.029 0.971 37 H 0.066 0.934 38 H 0.049 0.951 39 H 0.075 0.925 40 H 0.020 0.980 41 H -0.018 1.018 42 H 0.020 0.980 43 H 0.260 0.740 44 H 0.026 0.974 45 H 0.071 0.929 46 H 0.068 0.932 47 H 0.060 0.940 48 H 0.058 0.942 49 H 0.055 0.945 50 H 0.059 0.941 51 H 0.121 0.879 52 H 0.133 0.867 53 H 0.138 0.862 54 H 0.138 0.862 55 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.984 -11.696 -19.991 23.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.128 4.128 3 C -0.121 4.121 4 C -0.148 4.148 5 C -0.204 4.204 6 C -0.050 4.050 7 N -0.244 5.244 8 C 0.041 3.959 9 C -0.535 4.535 10 H 0.095 0.905 11 C -0.187 4.187 12 N -0.591 5.591 13 Si 0.753 3.247 14 H -0.197 1.197 15 H -0.217 1.217 16 H -0.180 1.180 17 C -0.079 4.079 18 C -0.132 4.132 19 C -0.065 4.065 20 H 0.098 0.902 21 C -0.199 4.199 22 C -0.079 4.079 23 C -0.144 4.144 24 C -0.147 4.147 25 C -0.153 4.153 26 C -0.145 4.145 27 C -0.149 4.149 28 H 0.050 0.950 29 H 0.033 0.967 30 H 0.129 0.871 31 H 0.079 0.921 32 H 0.057 0.943 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.048 0.952 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.093 0.907 40 H 0.039 0.961 41 H -0.001 1.001 42 H 0.038 0.962 43 H 0.069 0.931 44 H 0.044 0.956 45 H 0.090 0.910 46 H 0.087 0.913 47 H 0.079 0.921 48 H 0.078 0.922 49 H 0.075 0.925 50 H 0.078 0.922 51 H 0.139 0.861 52 H 0.151 0.849 53 H 0.156 0.844 54 H 0.156 0.844 55 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.728 -11.969 -19.596 23.263 hybrid contribution -0.095 1.789 0.217 1.804 sum 3.633 -10.180 -19.379 22.190 Atomic orbital electron populations 1.22203 0.96029 0.98993 1.04325 1.21254 0.96355 0.95250 0.99914 1.21519 0.94835 0.96778 0.98926 1.21485 0.95159 0.96616 1.01542 1.21746 1.00607 0.97112 1.00908 1.22084 0.87301 0.98220 0.97403 1.61998 1.12425 1.35454 1.14538 1.20068 0.94413 0.87090 0.94369 1.21658 1.41758 0.99796 0.90274 0.90490 1.25666 0.96278 1.01721 0.95019 1.70033 1.51713 1.32741 1.04612 0.86016 0.79223 0.80418 0.79048 1.19669 1.21703 1.18043 1.22284 1.00433 0.96995 0.88223 1.21617 1.01223 0.96040 0.94305 1.20104 0.97057 0.93833 0.95484 0.90182 1.21862 0.94153 1.02078 1.01842 1.19958 0.97143 0.94994 0.95790 1.21180 1.00543 0.92495 1.00171 1.21409 0.98450 0.97916 0.96898 1.21425 0.97950 0.99294 0.96638 1.21412 1.00154 0.92388 1.00511 1.21305 0.98412 0.98618 0.96593 0.95002 0.96717 0.87093 0.92087 0.94288 0.91119 0.92487 0.91002 0.95182 0.91532 0.93149 0.90654 0.96140 1.00055 0.96192 0.93071 0.95572 0.91030 0.91317 0.92149 0.92243 0.92549 0.92224 0.86111 0.84866 0.84402 0.84368 0.85237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.90 9.06 71.98 0.65 -5.25 16 2 C -0.09 -3.06 5.38 30.59 0.16 -2.89 16 3 C -0.10 -3.76 1.87 -10.79 -0.02 -3.78 16 4 C -0.11 -3.43 5.40 30.60 0.17 -3.26 16 5 C -0.15 -4.69 9.68 71.98 0.70 -4.00 16 6 C 0.08 2.72 4.11 86.30 0.35 3.08 16 7 N -0.52 -19.49 1.30 -900.84 -1.17 -20.66 16 8 C 0.17 7.67 3.80 85.56 0.33 8.00 16 9 C -0.50 -27.11 8.59 25.60 0.22 -26.89 16 10 H 0.08 4.55 3.94 -2.91 -0.01 4.54 16 11 C 0.01 0.54 5.47 84.66 0.46 1.00 16 12 N -0.95 -58.67 13.96 21.45 0.30 -58.37 16 13 Si 0.93 44.13 27.49 68.60 1.89 46.01 16 14 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 15 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 16 H -0.26 -11.51 6.50 99.48 0.65 -10.87 16 17 C 0.05 1.44 4.54 86.30 0.39 1.83 16 18 C -0.09 -2.32 3.97 30.59 0.12 -2.20 16 19 C -0.05 -0.94 2.56 -11.54 -0.03 -0.97 16 20 H 0.08 1.55 7.88 -2.39 -0.02 1.53 16 21 C -0.14 -2.80 8.76 71.98 0.63 -2.17 16 22 C -0.08 -1.61 4.78 -19.87 -0.09 -1.70 16 23 C -0.13 -2.58 8.76 22.27 0.20 -2.38 16 24 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 25 C -0.14 -2.22 10.05 22.27 0.22 -1.99 16 26 C -0.13 -2.10 10.05 22.27 0.22 -1.87 16 27 C -0.13 -2.43 9.67 22.27 0.22 -2.22 16 28 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 29 H 0.01 0.63 6.90 -2.39 -0.02 0.61 16 30 H 0.11 4.10 3.18 -2.39 -0.01 4.10 16 31 H 0.06 1.80 8.11 -2.38 -0.02 1.78 16 32 H 0.04 1.30 8.13 -2.39 -0.02 1.28 16 33 H 0.07 3.38 4.50 -2.38 -0.01 3.37 16 34 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.07 1.89 8.14 -2.38 -0.02 1.88 16 36 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 37 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.05 1.61 6.43 -2.39 -0.02 1.59 16 39 H 0.08 2.27 5.78 -2.39 -0.01 2.26 16 40 H 0.02 0.78 5.66 -2.39 -0.01 0.76 16 41 H -0.02 -0.86 6.63 -2.39 -0.02 -0.87 16 42 H 0.02 0.91 7.25 -2.39 -0.02 0.90 16 43 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 44 H 0.03 0.76 8.12 -2.39 -0.02 0.74 16 45 H 0.07 2.13 6.26 -2.39 -0.01 2.12 16 46 H 0.07 1.81 6.38 -2.38 -0.02 1.79 16 47 H 0.06 1.53 6.26 -2.39 -0.01 1.51 16 48 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.06 1.13 7.40 -2.39 -0.02 1.11 16 50 H 0.06 1.21 6.57 -2.39 -0.02 1.20 16 51 H 0.12 2.44 7.17 -2.91 -0.02 2.42 16 52 H 0.13 1.92 8.06 -2.91 -0.02 1.90 16 53 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 54 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 55 H 0.13 2.02 7.95 -2.91 -0.02 1.99 16 Total: -1.00 -62.74 401.84 6.92 -55.82 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: 0.78 Total: 26.97 kcal Atomic # 6 Polarization: -54.90 SS G_CDS: 5.12 Total: -49.78 kcal Atomic # 7 Polarization: -78.16 SS G_CDS: -0.87 Total: -79.03 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.89 Total: 46.01 kcal Total: -62.74 6.92 -55.82 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657303986.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.876 kcal (2) G-P(sol) polarization free energy of solvation -62.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds