Wall clock time and date at job start Tue Mar 31 2020 11:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46990 * 2 1 4 4 C 1.53003 * 109.46784 * 120.00117 * 2 1 3 5 5 C 1.52994 * 109.46836 * 174.99905 * 4 2 1 6 6 N 1.46903 * 109.47162 * 181.28421 * 5 4 2 7 7 C 1.46896 * 111.00048 * 287.60540 * 6 5 4 8 8 C 1.50699 * 109.46964 * 298.16020 * 7 6 5 9 9 H 1.07989 * 120.00395 * 4.87642 * 8 7 6 10 10 C 1.37884 * 119.99698 * 184.87653 * 8 7 6 11 11 N 1.31515 * 120.00186 * 180.02562 * 10 8 7 12 12 Si 1.86804 * 119.99942 * 359.97438 * 10 8 7 13 13 H 1.48504 * 109.46774 * 90.00373 * 12 10 8 14 14 H 1.48499 * 109.46958 * 209.99773 * 12 10 8 15 15 H 1.48495 * 109.47171 * 330.00234 * 12 10 8 16 16 C 1.46906 * 111.00051 * 163.65028 * 6 5 4 17 17 C 1.52995 * 109.46918 * 190.00021 * 16 6 5 18 18 C 1.50700 * 109.47014 * 179.97438 * 17 16 6 19 19 C 1.38237 * 120.00088 * 269.72594 * 18 17 16 20 20 C 1.38232 * 119.99660 * 180.32071 * 19 18 17 21 21 C 1.38236 * 120.00452 * 359.95679 * 20 19 18 22 22 C 1.50705 * 120.00076 * 180.02562 * 21 20 19 23 23 C 1.53002 * 109.46843 * 300.01813 * 22 21 20 24 24 C 1.52998 * 109.47105 * 60.01877 * 22 21 20 25 25 C 1.38237 * 119.99829 * 0.02562 * 21 20 19 26 26 C 1.38231 * 119.99743 * 0.02562 * 25 21 20 27 27 H 1.08999 * 109.46814 * 299.99975 * 1 2 3 28 28 H 1.09000 * 109.47070 * 59.99838 * 1 2 3 29 29 H 1.08998 * 109.47497 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46814 * 240.00025 * 2 1 3 31 31 H 1.09000 * 109.47346 * 299.99992 * 3 2 1 32 32 H 1.08999 * 109.47322 * 60.00336 * 3 2 1 33 33 H 1.09004 * 109.47064 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47303 * 54.99792 * 4 2 1 35 35 H 1.09000 * 109.47103 * 294.99684 * 4 2 1 36 36 H 1.09005 * 109.47644 * 61.28548 * 5 4 2 37 37 H 1.09000 * 109.47363 * 301.28681 * 5 4 2 38 38 H 1.08999 * 109.47118 * 58.16189 * 7 6 5 39 39 H 1.09004 * 109.47276 * 178.16047 * 7 6 5 40 40 H 0.96995 * 120.00415 * 180.02562 * 11 10 8 41 41 H 1.08998 * 109.46911 * 70.00306 * 16 6 5 42 42 H 1.08997 * 109.47201 * 310.00180 * 16 6 5 43 43 H 1.08998 * 109.47097 * 60.00399 * 17 16 6 44 44 H 1.08997 * 109.47315 * 300.00090 * 17 16 6 45 45 H 1.08000 * 120.00030 * 0.27959 * 19 18 17 46 46 H 1.08005 * 119.99590 * 179.97438 * 20 19 18 47 47 H 1.08998 * 109.46943 * 180.02562 * 22 21 20 48 48 H 1.08996 * 109.47429 * 60.00191 * 23 22 21 49 49 H 1.09003 * 109.46849 * 180.02562 * 23 22 21 50 50 H 1.09000 * 109.46932 * 299.99996 * 23 22 21 51 51 H 1.08996 * 109.47081 * 299.99756 * 24 22 21 52 52 H 1.09003 * 109.47074 * 60.00013 * 24 22 21 53 53 H 1.09003 * 109.46556 * 180.02562 * 24 22 21 54 54 H 1.07997 * 119.99869 * 179.97438 * 25 21 20 55 55 H 1.08000 * 119.99703 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.8311 1.1880 6 7 4.0519 -1.5507 2.3725 7 6 3.9441 -0.7164 3.5766 8 6 4.8034 0.5111 3.4158 9 1 5.3103 0.6967 2.4805 10 6 4.9424 1.3973 4.4630 11 7 5.6919 2.4688 4.3225 12 14 4.0650 1.0767 6.0806 13 1 4.9431 0.2740 6.9694 14 1 3.7472 2.3707 6.7363 15 1 2.8073 0.3307 5.8222 16 6 5.4316 -2.0154 2.1757 17 6 5.8169 -2.9646 3.3120 18 6 7.2320 -3.4418 3.1099 19 6 7.4764 -4.5922 2.3834 20 6 8.7740 -5.0334 2.2037 21 6 9.8273 -4.3239 2.7496 22 6 11.2420 -4.8047 2.5530 23 6 11.3917 -6.2060 3.1487 24 6 11.5624 -4.8492 1.0577 25 6 9.5829 -3.1733 3.4757 26 6 8.2852 -2.7326 3.6564 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6053 -1.7198 1.2952 35 1 1.7517 -0.1583 2.1370 36 1 4.0005 0.1678 1.1651 37 1 3.8541 -1.3743 0.2884 38 1 2.9058 -0.4169 3.7194 39 1 4.2808 -1.2846 4.4438 40 1 5.7900 3.0921 5.0593 41 1 6.1063 -1.1593 2.1729 42 1 5.5060 -2.5398 1.2231 43 1 5.1422 -3.8207 3.3149 44 1 5.7425 -2.4402 4.2646 45 1 6.6535 -5.1466 1.9569 46 1 8.9649 -5.9325 1.6364 47 1 11.9302 -4.1224 3.0520 48 1 10.7035 -6.8883 2.6499 49 1 12.4151 -6.5536 3.0070 50 1 11.1634 -6.1742 4.2141 51 1 10.8742 -5.5316 0.5588 52 1 11.4557 -3.8509 0.6333 53 1 12.5855 -5.1975 0.9156 54 1 10.4058 -2.6191 3.9025 55 1 8.0943 -1.8339 4.2240 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001658348198.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:03 Heat of formation + Delta-G solvation = -27.347359 kcal Electronic energy + Delta-G solvation = -26935.883139 eV Core-core repulsion = 23549.443737 eV Total energy + Delta-G solvation = -3386.439402 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 317.241 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.63691 -39.27817 -37.15795 -36.35273 -34.55079 -33.05557 -31.78086 -30.43672 -29.66843 -27.99239 -27.94501 -27.49997 -25.08271 -24.28565 -23.60018 -22.42156 -21.15174 -20.71734 -20.65400 -18.99625 -17.40127 -16.78045 -16.54772 -16.42329 -16.25884 -15.77038 -15.68784 -14.98560 -14.78698 -14.61578 -14.58362 -14.49287 -14.33879 -14.14731 -14.05203 -13.71134 -13.44010 -13.20981 -13.19736 -13.01204 -12.87187 -12.63413 -12.44544 -12.41081 -12.38085 -12.21984 -12.12508 -11.94044 -11.84258 -11.72795 -11.62106 -11.51066 -11.46175 -11.38129 -11.25932 -11.24566 -10.75237 -9.78395 -9.34887 -8.93757 -8.30259 -6.32399 0.46355 0.53848 1.31209 1.33035 1.44229 2.32094 2.84703 3.05539 3.29090 3.77625 3.87708 4.00014 4.09491 4.11020 4.14008 4.17845 4.21918 4.34943 4.36368 4.43467 4.51753 4.56696 4.62398 4.67694 4.73192 4.80588 4.82742 4.84571 4.84876 4.88029 4.98414 4.99606 5.02163 5.04009 5.08256 5.10766 5.13130 5.15319 5.21969 5.23187 5.27468 5.28091 5.33392 5.37257 5.42425 5.42616 5.49792 5.58395 5.59149 5.62218 5.77803 5.84401 6.11870 6.18355 6.38148 6.47324 6.73040 7.32790 8.86035 Molecular weight = 317.24amu Principal moments of inertia in cm(-1) A = 0.011481 B = 0.003238 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.170903 B = 8645.477840 C =10178.500015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 C -0.145 4.145 4 C -0.097 4.097 5 C 0.058 3.942 6 N -0.530 5.530 7 C 0.162 3.838 8 C -0.533 4.533 9 H 0.033 0.967 10 C 0.015 3.985 11 N -0.947 5.947 12 Si 0.936 3.064 13 H -0.269 1.269 14 H -0.285 1.285 15 H -0.247 1.247 16 C 0.077 3.923 17 C -0.065 4.065 18 C -0.088 4.088 19 C -0.116 4.116 20 C -0.114 4.114 21 C -0.086 4.086 22 C -0.056 4.056 23 C -0.140 4.140 24 C -0.141 4.141 25 C -0.128 4.128 26 C -0.132 4.132 27 H 0.045 0.955 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.038 0.962 33 H 0.035 0.965 34 H 0.072 0.928 35 H 0.040 0.960 36 H 0.020 0.980 37 H 0.068 0.932 38 H 0.026 0.974 39 H 0.027 0.973 40 H 0.263 0.737 41 H 0.008 0.992 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.050 0.950 45 H 0.140 0.860 46 H 0.145 0.855 47 H 0.075 0.925 48 H 0.062 0.938 49 H 0.071 0.929 50 H 0.048 0.952 51 H 0.062 0.938 52 H 0.044 0.956 53 H 0.072 0.928 54 H 0.125 0.875 55 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.178 -16.781 -6.900 18.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 C -0.203 4.203 4 C -0.135 4.135 5 C -0.070 4.070 6 N -0.252 5.252 7 C 0.034 3.966 8 C -0.572 4.572 9 H 0.051 0.949 10 C -0.183 4.183 11 N -0.587 5.587 12 Si 0.760 3.240 13 H -0.194 1.194 14 H -0.211 1.211 15 H -0.170 1.170 16 C -0.052 4.052 17 C -0.103 4.103 18 C -0.089 4.089 19 C -0.134 4.134 20 C -0.131 4.131 21 C -0.086 4.086 22 C -0.074 4.074 23 C -0.197 4.197 24 C -0.199 4.199 25 C -0.146 4.146 26 C -0.151 4.151 27 H 0.065 0.935 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.038 0.962 37 H 0.087 0.913 38 H 0.044 0.956 39 H 0.046 0.954 40 H 0.072 0.928 41 H 0.027 0.973 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.069 0.931 45 H 0.157 0.843 46 H 0.162 0.838 47 H 0.094 0.906 48 H 0.081 0.919 49 H 0.090 0.910 50 H 0.067 0.933 51 H 0.081 0.919 52 H 0.063 0.937 53 H 0.091 0.909 54 H 0.143 0.857 55 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.926 -17.053 -6.751 18.573 hybrid contribution 0.502 1.867 1.044 2.197 sum 3.428 -15.187 -5.707 16.582 Atomic orbital electron populations 1.21779 0.93863 1.02229 1.01793 1.21067 0.96645 0.95373 0.97785 1.21842 1.00205 0.96954 1.01253 1.21498 0.94019 1.00458 0.97540 1.22072 0.96203 0.96472 0.92214 1.62505 1.20328 1.38621 1.03744 1.20018 0.95714 0.90305 0.90524 1.21780 1.28948 1.07293 0.99202 0.94864 1.25778 0.95554 0.94548 1.02373 1.70071 1.41207 1.13751 1.33700 0.85879 0.80503 0.77896 0.79766 1.19402 1.21107 1.17015 1.21826 0.89161 0.96247 0.97943 1.20447 0.92508 0.99059 0.98282 1.19935 0.94840 0.95866 0.98253 1.21241 0.97929 0.95741 0.98472 1.21182 0.91597 1.00392 0.99961 1.20109 0.96532 0.94678 0.97310 1.20161 0.91376 0.98195 0.97705 1.21829 1.02606 0.94818 1.00422 1.21841 1.02327 1.01695 0.93988 1.21185 0.96098 0.97254 1.00054 1.21143 0.93672 0.99428 1.00834 0.93536 0.91581 0.91728 0.90387 0.91394 0.94318 0.94577 0.90895 0.94115 0.96165 0.91341 0.95555 0.95449 0.92764 0.97345 0.90942 0.89430 0.93105 0.84267 0.83770 0.90648 0.91911 0.90978 0.93328 0.91909 0.93706 0.90901 0.85716 0.88432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 9.19 71.98 0.66 -2.47 16 2 C -0.09 -2.46 2.92 -10.79 -0.03 -2.49 16 3 C -0.15 -4.49 8.95 71.98 0.64 -3.84 16 4 C -0.10 -3.22 4.71 30.59 0.14 -3.07 16 5 C 0.06 2.24 4.53 86.30 0.39 2.63 16 6 N -0.53 -21.74 4.66 -900.80 -4.20 -25.95 16 7 C 0.16 7.72 3.83 85.56 0.33 8.05 16 8 C -0.53 -30.24 7.88 25.60 0.20 -30.04 16 9 H 0.03 2.12 6.20 -2.92 -0.02 2.10 16 10 C 0.02 0.89 5.47 84.66 0.46 1.35 16 11 N -0.95 -59.42 13.96 21.45 0.30 -59.12 16 12 Si 0.94 44.61 27.37 68.60 1.88 46.49 16 13 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 14 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 15 H -0.25 -10.99 6.68 99.48 0.66 -10.32 16 16 C 0.08 3.00 4.75 86.30 0.41 3.41 16 17 C -0.07 -2.30 5.27 29.85 0.16 -2.15 16 18 C -0.09 -2.86 5.13 -19.87 -0.10 -2.97 16 19 C -0.12 -3.03 9.70 22.27 0.22 -2.82 16 20 C -0.11 -2.60 8.71 22.27 0.19 -2.40 16 21 C -0.09 -2.08 4.78 -19.86 -0.09 -2.17 16 22 C -0.06 -1.01 3.09 -11.54 -0.04 -1.04 16 23 C -0.14 -2.05 9.01 71.98 0.65 -1.40 16 24 C -0.14 -2.22 9.01 71.98 0.65 -1.57 16 25 C -0.13 -3.71 9.67 22.27 0.22 -3.50 16 26 C -0.13 -4.57 9.70 22.27 0.22 -4.35 16 27 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.04 1.29 8.14 -2.39 -0.02 1.28 16 33 H 0.04 1.27 6.59 -2.39 -0.02 1.26 16 34 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.04 1.54 6.80 -2.39 -0.02 1.52 16 36 H 0.02 0.93 4.69 -2.38 -0.01 0.92 16 37 H 0.07 2.33 7.80 -2.39 -0.02 2.31 16 38 H 0.03 1.28 6.08 -2.39 -0.01 1.26 16 39 H 0.03 1.31 5.54 -2.38 -0.01 1.29 16 40 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 41 H 0.01 0.39 6.53 -2.39 -0.02 0.38 16 42 H 0.07 2.52 7.86 -2.39 -0.02 2.50 16 43 H 0.09 2.72 8.08 -2.39 -0.02 2.70 16 44 H 0.05 2.04 6.45 -2.39 -0.02 2.02 16 45 H 0.14 3.02 8.06 -2.91 -0.02 2.99 16 46 H 0.14 2.45 7.10 -2.91 -0.02 2.43 16 47 H 0.08 1.35 7.88 -2.39 -0.02 1.33 16 48 H 0.06 0.85 7.39 -2.39 -0.02 0.83 16 49 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 50 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 51 H 0.06 0.91 7.39 -2.39 -0.02 0.89 16 52 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 53 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 54 H 0.12 3.26 7.95 -2.91 -0.02 3.24 16 55 H 0.10 3.80 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -65.73 417.53 4.02 -61.71 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: 0.77 Total: 27.71 kcal Atomic # 6 Polarization: -56.11 SS G_CDS: 5.27 Total: -50.84 kcal Atomic # 7 Polarization: -81.16 SS G_CDS: -3.90 Total: -85.06 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.88 Total: 46.49 kcal Total: -65.73 4.02 -61.71 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658348198.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.361 kcal (2) G-P(sol) polarization free energy of solvation -65.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds