Wall clock time and date at job start Tue Mar 31 2020 11:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47304 * 2 1 4 4 C 1.50704 * 109.47144 * 120.00029 * 2 1 3 5 5 C 1.38239 * 120.00015 * 119.99581 * 4 2 1 6 6 C 1.38233 * 119.99840 * 180.02562 * 5 4 2 7 7 C 1.38231 * 120.00255 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00019 * 179.69830 * 7 6 5 9 9 C 1.53000 * 109.47341 * 89.99602 * 8 7 6 10 10 N 1.46893 * 109.47306 * 183.82046 * 9 8 7 11 11 C 1.46907 * 111.00028 * 166.78554 * 10 9 8 12 12 C 1.50704 * 109.46927 * 193.63687 * 11 10 9 13 13 H 1.07998 * 120.00273 * 359.97438 * 12 11 10 14 14 C 1.37874 * 119.99450 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00513 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99725 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47059 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47578 * 119.99906 * 16 14 12 19 19 H 1.48504 * 109.47108 * 239.99918 * 16 14 12 20 20 C 1.46896 * 111.00063 * 290.74060 * 10 9 8 21 21 C 1.53004 * 109.47248 * 318.75103 * 20 10 9 22 22 C 1.52998 * 109.46848 * 77.52040 * 21 20 10 23 23 C 1.53004 * 109.47068 * 197.52289 * 21 20 10 24 24 C 1.52996 * 109.47127 * 317.52011 * 21 20 10 25 25 C 1.38237 * 119.99676 * 359.96974 * 7 6 5 26 26 C 1.38231 * 119.99886 * 300.02010 * 4 2 1 27 27 H 1.08998 * 109.47102 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47132 * 299.99973 * 1 2 3 29 29 H 1.09001 * 109.46901 * 59.99808 * 1 2 3 30 30 H 1.09006 * 109.46739 * 239.99622 * 2 1 3 31 31 H 1.09004 * 109.46704 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.47019 * 299.99580 * 3 2 1 33 33 H 1.08996 * 109.47004 * 59.99949 * 3 2 1 34 34 H 1.08003 * 119.99765 * 0.02562 * 5 4 2 35 35 H 1.08000 * 119.99885 * 179.97438 * 6 5 4 36 36 H 1.09006 * 109.46672 * 209.99048 * 8 7 6 37 37 H 1.09000 * 109.47033 * 329.99335 * 8 7 6 38 38 H 1.08994 * 109.46959 * 303.82568 * 9 8 7 39 39 H 1.09003 * 109.46994 * 63.82047 * 9 8 7 40 40 H 1.09000 * 109.46551 * 313.63452 * 11 10 9 41 41 H 1.08998 * 109.46689 * 73.63913 * 11 10 9 42 42 H 0.96997 * 120.00297 * 180.02562 * 15 14 12 43 43 H 1.09000 * 109.47594 * 78.75388 * 20 10 9 44 44 H 1.09008 * 109.47204 * 198.75319 * 20 10 9 45 45 H 1.09001 * 109.46908 * 58.12101 * 22 21 20 46 46 H 1.09001 * 109.46616 * 178.11690 * 22 21 20 47 47 H 1.08991 * 109.47325 * 298.12108 * 22 21 20 48 48 H 1.08992 * 109.47078 * 59.99878 * 23 21 20 49 49 H 1.08998 * 109.47105 * 180.02562 * 23 21 20 50 50 H 1.09001 * 109.46842 * 299.99603 * 23 21 20 51 51 H 1.09004 * 109.47074 * 66.85075 * 24 21 20 52 52 H 1.08999 * 109.47498 * 186.85331 * 24 21 20 53 53 H 1.09005 * 109.47476 * 306.85447 * 24 21 20 54 54 H 1.08001 * 119.99727 * 179.97438 * 25 7 6 55 55 H 1.08003 * 120.00003 * 0.02562 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.8270 -1.8344 1.1036 6 6 3.2874 -2.4864 2.2323 7 6 2.9526 -2.0147 3.4878 8 6 3.4489 -2.7294 4.7182 9 6 4.7984 -2.1439 5.1388 10 7 5.3253 -2.9002 6.2825 11 6 6.7401 -2.5818 6.5174 12 6 7.3341 -3.5979 7.4587 13 1 6.7217 -4.3996 7.8443 14 6 8.6589 -3.5032 7.8285 15 7 9.4044 -2.5266 7.3594 16 14 9.3953 -4.7629 8.9947 17 1 8.3555 -5.7525 9.3753 18 1 10.5211 -5.4606 8.3232 19 1 9.8947 -4.0768 10.2134 20 6 4.5236 -2.6567 7.4890 21 6 4.1636 -1.1719 7.5711 22 6 3.0206 -0.8699 6.5998 23 6 3.7248 -0.8316 8.9968 24 6 5.3853 -0.3296 7.1988 25 6 2.1580 -0.8906 3.6146 26 6 1.6981 -0.2384 2.4860 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 3.1301 1.4423 -0.0005 32 1 1.6768 1.9563 -0.8901 33 1 1.6767 1.9563 0.8900 34 1 3.0882 -2.2032 0.1227 35 1 3.9079 -3.3647 2.1332 36 1 2.7296 -2.6019 5.5273 37 1 3.5656 -3.7908 4.4996 38 1 5.4984 -2.2098 4.3059 39 1 4.6688 -1.0994 5.4225 40 1 7.2797 -2.6047 5.5705 41 1 6.8206 -1.5880 6.9576 42 1 10.3366 -2.4602 7.6193 43 1 3.6103 -3.2501 7.4444 44 1 5.0984 -2.9405 8.3707 45 1 2.1614 -1.4943 6.8445 46 1 2.7417 0.1806 6.6825 47 1 3.3446 -1.0807 5.5808 48 1 4.5390 -1.0468 9.6887 49 1 3.4678 0.2261 9.0552 50 1 2.8543 -1.4317 9.2620 51 1 5.6240 -0.4812 6.1461 52 1 5.1673 0.7240 7.3739 53 1 6.2351 -0.6314 7.8112 54 1 1.8962 -0.5223 4.5955 55 1 1.0765 0.6393 2.5850 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001658955617.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:26 Heat of formation + Delta-G solvation = 52.152570 kcal Electronic energy + Delta-G solvation = -27996.743933 eV Core-core repulsion = 24613.751907 eV Total energy + Delta-G solvation = -3382.992026 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 317.241 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.66387 -40.22366 -36.77636 -35.55495 -34.48112 -33.29282 -31.76322 -29.84369 -29.14385 -28.16465 -27.93777 -27.61468 -26.33677 -24.54415 -23.61505 -22.58488 -21.66445 -20.73125 -19.73261 -18.45580 -17.49761 -17.10327 -16.66584 -16.43242 -16.01246 -15.81498 -15.51940 -15.13472 -14.83207 -14.63312 -14.45268 -14.41045 -14.24062 -14.05176 -13.91019 -13.50505 -13.15493 -13.08954 -12.95727 -12.86606 -12.81891 -12.54110 -12.49034 -12.37974 -12.27542 -12.17638 -12.12882 -12.00622 -11.87230 -11.68834 -11.60185 -11.44343 -11.40315 -11.15008 -11.01403 -10.88899 -10.50000 -9.74743 -9.32824 -8.55512 -8.13019 -6.21518 0.48705 0.56988 1.38672 1.39904 1.52664 2.41811 2.88028 3.17080 3.43424 3.79926 3.89231 3.94123 3.96422 4.05236 4.13009 4.19546 4.22559 4.35058 4.37229 4.45956 4.58225 4.61709 4.63752 4.69963 4.71539 4.74008 4.76088 4.84853 4.88644 4.93013 4.96333 5.00919 5.03259 5.05347 5.07659 5.14211 5.16004 5.22434 5.26036 5.30344 5.33813 5.34581 5.39283 5.42461 5.42908 5.51781 5.57974 5.60516 5.64822 5.73852 5.80932 5.84753 6.18048 6.19844 6.52553 6.79286 6.95625 7.45898 8.95357 Molecular weight = 317.24amu Principal moments of inertia in cm(-1) A = 0.018367 B = 0.002987 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.103884 B = 9372.458049 C =10078.836097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.055 4.055 3 C -0.143 4.143 4 C -0.087 4.087 5 C -0.125 4.125 6 C -0.129 4.129 7 C -0.089 4.089 8 C -0.080 4.080 9 C 0.029 3.971 10 N -0.542 5.542 11 C 0.174 3.826 12 C -0.512 4.512 13 H 0.054 0.946 14 C 0.002 3.998 15 N -0.934 5.934 16 Si 0.960 3.040 17 H -0.266 1.266 18 H -0.281 1.281 19 H -0.279 1.279 20 C 0.072 3.928 21 C -0.092 4.092 22 C -0.191 4.191 23 C -0.131 4.131 24 C -0.156 4.156 25 C -0.128 4.128 26 C -0.117 4.117 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.132 0.868 35 H 0.117 0.883 36 H 0.097 0.903 37 H 0.062 0.938 38 H 0.036 0.964 39 H 0.085 0.915 40 H -0.017 1.017 41 H 0.028 0.972 42 H 0.261 0.739 43 H 0.072 0.928 44 H 0.051 0.949 45 H 0.067 0.933 46 H 0.059 0.941 47 H 0.108 0.892 48 H 0.038 0.962 49 H 0.063 0.937 50 H 0.067 0.933 51 H 0.059 0.941 52 H 0.058 0.942 53 H 0.043 0.957 54 H 0.137 0.863 55 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.037 7.696 -10.857 24.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.074 4.074 3 C -0.200 4.200 4 C -0.087 4.087 5 C -0.143 4.143 6 C -0.147 4.147 7 C -0.090 4.090 8 C -0.117 4.117 9 C -0.098 4.098 10 N -0.265 5.265 11 C 0.048 3.952 12 C -0.551 4.551 13 H 0.072 0.928 14 C -0.196 4.196 15 N -0.575 5.575 16 Si 0.785 3.215 17 H -0.191 1.191 18 H -0.207 1.207 19 H -0.204 1.204 20 C -0.056 4.056 21 C -0.094 4.094 22 C -0.246 4.246 23 C -0.189 4.189 24 C -0.212 4.212 25 C -0.146 4.146 26 C -0.135 4.135 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.150 0.850 35 H 0.135 0.865 36 H 0.115 0.885 37 H 0.081 0.919 38 H 0.054 0.946 39 H 0.102 0.898 40 H 0.001 0.999 41 H 0.045 0.955 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.078 0.922 47 H 0.126 0.874 48 H 0.057 0.943 49 H 0.082 0.918 50 H 0.086 0.914 51 H 0.077 0.923 52 H 0.077 0.923 53 H 0.061 0.939 54 H 0.155 0.845 55 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -19.887 7.239 -10.966 23.836 hybrid contribution 1.435 -0.083 0.835 1.663 sum -18.452 7.156 -10.130 22.233 Atomic orbital electron populations 1.21833 0.93502 1.01883 1.02574 1.20155 0.96568 0.96107 0.94553 1.21852 1.00707 0.94878 1.02591 1.20106 0.97551 0.95555 0.95528 1.21241 0.98413 0.96026 0.98648 1.21207 1.00259 1.00615 0.92581 1.19913 0.98002 0.96497 0.94558 1.20860 0.96318 0.98969 0.95597 1.23031 0.95363 0.98341 0.93074 1.62155 1.03324 1.56432 1.04557 1.20156 0.83804 0.96978 0.94266 1.21517 0.95372 1.11624 1.26572 0.92787 1.25786 0.97638 0.97777 0.98374 1.70079 1.07636 1.33444 1.46359 0.85473 0.78260 0.79128 0.78595 1.19071 1.20737 1.20447 1.22170 0.96793 0.93803 0.92884 1.21091 0.95431 0.95839 0.97037 1.23394 0.97247 1.01839 1.02141 1.21774 1.00854 1.01700 0.94593 1.22558 0.97868 0.99445 1.01344 1.21432 0.98012 0.95277 0.99870 1.21165 1.00330 1.00287 0.91683 0.93073 0.92266 0.91182 0.90229 0.93525 0.91089 0.92290 0.85043 0.86532 0.88520 0.91907 0.94584 0.89757 0.99886 0.95501 0.92989 0.90983 0.93039 0.91382 0.92176 0.87436 0.94272 0.91812 0.91434 0.92278 0.92281 0.93872 0.84488 0.84510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.01 71.98 0.65 -1.09 16 2 C -0.06 -0.82 3.09 -11.54 -0.04 -0.86 16 3 C -0.14 -1.96 9.01 71.98 0.65 -1.31 16 4 C -0.09 -1.74 4.78 -19.86 -0.09 -1.83 16 5 C -0.13 -2.79 9.67 22.27 0.22 -2.58 16 6 C -0.13 -3.33 9.70 22.27 0.22 -3.12 16 7 C -0.09 -2.35 5.06 -19.87 -0.10 -2.45 16 8 C -0.08 -2.35 4.49 29.85 0.13 -2.21 16 9 C 0.03 1.05 3.73 86.30 0.32 1.37 16 10 N -0.54 -23.36 4.65 -900.79 -4.19 -27.55 16 11 C 0.17 9.22 4.15 85.56 0.36 9.58 16 12 C -0.51 -29.49 8.26 25.60 0.21 -29.28 16 13 H 0.05 3.11 7.60 -2.91 -0.02 3.09 16 14 C 0.00 0.09 5.46 84.65 0.46 0.55 16 15 N -0.93 -56.79 13.29 21.45 0.28 -56.50 16 16 Si 0.96 45.38 29.54 68.60 2.03 47.41 16 17 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 18 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 20 C 0.07 2.70 4.58 86.31 0.40 3.09 16 21 C -0.09 -2.88 0.77 -52.18 -0.04 -2.92 16 22 C -0.19 -4.72 4.85 71.98 0.35 -4.37 16 23 C -0.13 -3.58 8.40 71.98 0.60 -2.97 16 24 C -0.16 -5.65 6.54 71.98 0.47 -5.18 16 25 C -0.13 -2.92 9.00 22.27 0.20 -2.72 16 26 C -0.12 -2.34 8.71 22.27 0.19 -2.15 16 27 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.06 0.71 7.39 -2.39 -0.02 0.69 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.66 16 30 H 0.08 1.11 7.88 -2.38 -0.02 1.09 16 31 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.06 0.78 7.39 -2.39 -0.02 0.76 16 34 H 0.13 2.43 7.95 -2.91 -0.02 2.41 16 35 H 0.12 3.03 8.06 -2.91 -0.02 3.00 16 36 H 0.10 2.57 4.37 -2.38 -0.01 2.56 16 37 H 0.06 1.97 8.09 -2.39 -0.02 1.95 16 38 H 0.04 1.45 7.82 -2.39 -0.02 1.43 16 39 H 0.09 2.91 2.31 -2.39 -0.01 2.90 16 40 H -0.02 -1.02 7.81 -2.39 -0.02 -1.03 16 41 H 0.03 1.49 3.45 -2.39 -0.01 1.48 16 42 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 43 H 0.07 2.41 7.47 -2.39 -0.02 2.40 16 44 H 0.05 2.23 6.74 -2.38 -0.02 2.22 16 45 H 0.07 1.48 7.32 -2.39 -0.02 1.47 16 46 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.11 2.80 0.88 -2.39 0.00 2.80 16 48 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 49 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 50 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 51 H 0.06 2.29 4.08 -2.39 -0.01 2.28 16 52 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 53 H 0.04 1.91 6.14 -2.38 -0.01 1.89 16 54 H 0.14 2.74 5.67 -2.91 -0.02 2.73 16 55 H 0.14 2.14 7.10 -2.91 -0.02 2.12 16 Total: -1.00 -64.61 395.13 4.13 -60.47 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: 0.86 Total: 26.61 kcal Atomic # 6 Polarization: -55.59 SS G_CDS: 5.16 Total: -50.44 kcal Atomic # 7 Polarization: -80.15 SS G_CDS: -3.90 Total: -84.05 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -64.61 4.13 -60.47 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658955617.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.623 kcal (2) G-P(sol) polarization free energy of solvation -64.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds