Wall clock time and date at job start Tue Mar 31 2020 11:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47057 * 2 1 4 4 C 1.52999 * 109.47368 * 304.22451 * 3 2 1 5 5 C 1.52997 * 109.47210 * 294.31965 * 4 3 2 6 6 C 1.53006 * 109.46817 * 64.22626 * 3 2 1 7 7 N 1.46900 * 109.46981 * 64.46142 * 6 3 2 8 8 C 1.46900 * 110.99761 * 199.84976 * 7 6 3 9 9 C 1.50703 * 109.47291 * 71.49313 * 8 7 6 10 10 H 1.07995 * 119.99743 * 2.80662 * 9 8 7 11 11 C 1.37871 * 119.99938 * 182.81592 * 9 8 7 12 12 N 1.31525 * 119.99909 * 184.92408 * 11 9 8 13 13 Si 1.86794 * 120.00339 * 4.91734 * 11 9 8 14 14 H 1.48503 * 109.47326 * 94.33034 * 13 11 9 15 15 H 1.48505 * 109.47370 * 214.32734 * 13 11 9 16 16 H 1.48497 * 109.47287 * 334.32795 * 13 11 9 17 17 C 1.46901 * 111.00128 * 75.89641 * 7 6 3 18 18 C 1.52999 * 109.47206 * 200.36258 * 17 7 6 19 19 H 1.08992 * 109.47420 * 305.74769 * 18 17 7 20 20 C 1.52999 * 109.46941 * 185.74624 * 18 17 7 21 21 C 1.52999 * 109.47009 * 65.48327 * 20 18 17 22 22 C 1.50708 * 109.46729 * 65.75126 * 18 17 7 23 23 C 1.38230 * 120.00177 * 59.71977 * 22 18 17 24 24 C 1.38237 * 119.99938 * 179.80527 * 23 22 18 25 25 C 1.38230 * 119.99918 * 0.40815 * 24 23 22 26 26 C 1.38234 * 120.00185 * 359.84788 * 25 24 23 27 27 C 1.38229 * 119.99520 * 239.99697 * 22 18 17 28 28 H 1.09002 * 109.47188 * 60.92778 * 1 2 3 29 29 H 1.09006 * 109.46734 * 180.92491 * 1 2 3 30 30 H 1.09000 * 109.46750 * 300.92378 * 1 2 3 31 31 H 1.09003 * 109.46827 * 240.00687 * 2 1 3 32 32 H 1.09000 * 109.47237 * 120.00606 * 2 1 3 33 33 H 1.09000 * 109.47246 * 184.22145 * 3 2 1 34 34 H 1.09001 * 109.47113 * 54.32179 * 4 3 2 35 35 H 1.09000 * 109.46551 * 174.31924 * 4 3 2 36 36 H 1.09006 * 109.46784 * 65.94846 * 5 4 3 37 37 H 1.08998 * 109.47208 * 185.94874 * 5 4 3 38 38 H 1.09005 * 109.47153 * 305.95029 * 5 4 3 39 39 H 1.08999 * 109.46906 * 304.46378 * 6 3 2 40 40 H 1.08998 * 109.46812 * 184.46157 * 6 3 2 41 41 H 1.09004 * 109.47109 * 191.49653 * 8 7 6 42 42 H 1.09003 * 109.47384 * 311.49339 * 8 7 6 43 43 H 0.96997 * 119.99903 * 179.97438 * 12 11 9 44 44 H 1.09003 * 109.47019 * 80.36308 * 17 7 6 45 45 H 1.08999 * 109.47058 * 320.37222 * 17 7 6 46 46 H 1.09000 * 109.46804 * 185.48566 * 20 18 17 47 47 H 1.09001 * 109.47204 * 305.47901 * 20 18 17 48 48 H 1.08996 * 109.47205 * 293.79679 * 21 20 18 49 49 H 1.08994 * 109.47109 * 53.80348 * 21 20 18 50 50 H 1.09004 * 109.46718 * 173.80042 * 21 20 18 51 51 H 1.08009 * 120.00256 * 0.02562 * 23 22 18 52 52 H 1.08004 * 119.99867 * 180.23111 * 24 23 22 53 53 H 1.07999 * 119.99796 * 179.82579 * 25 24 23 54 54 H 1.08002 * 120.00456 * 179.97438 * 26 25 24 55 55 H 1.07995 * 120.00430 * 359.97438 * 27 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4451 2.1938 -1.1927 5 6 1.9798 1.5911 -2.4933 6 6 1.6186 2.1323 1.2991 7 7 2.2755 1.4761 2.4374 8 6 1.5702 1.7686 3.6923 9 6 0.2564 1.0306 3.7141 10 1 -0.0061 0.3714 2.9000 11 6 -0.6105 1.1974 4.7731 12 7 -1.7117 0.4814 4.8405 13 14 -0.2209 2.4399 6.1124 14 1 -0.8911 3.7283 5.8024 15 1 -0.7096 1.9295 7.4185 16 1 1.2476 2.6497 6.1810 17 6 3.6894 1.8650 2.5251 18 6 4.4530 0.8288 3.3522 19 1 3.9651 0.7043 4.3188 20 6 5.8913 1.3053 3.5645 21 6 5.8876 2.5710 4.4241 22 6 4.4631 -0.4890 2.6210 23 6 5.0282 -0.5768 1.3626 24 6 5.0411 -1.7865 0.6936 25 6 4.4814 -2.9063 1.2796 26 6 3.9115 -2.8173 2.5359 27 6 3.9022 -1.6085 3.2065 28 1 -0.3634 0.4994 -0.8982 29 1 -0.3633 -1.0276 0.0166 30 1 -0.3633 0.5281 0.8816 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.1274 1.4434 -0.0756 34 1 0.3588 2.1070 -1.1716 35 1 1.7267 3.2453 -1.1367 36 1 1.6100 0.5712 -2.6001 37 1 1.6408 2.1908 -3.3380 38 1 3.0695 1.5817 -2.4684 39 1 0.5369 2.0616 1.4136 40 1 1.9126 3.1814 1.2652 41 1 2.1813 1.4475 4.5359 42 1 1.3860 2.8405 3.7644 43 1 -2.3214 0.5984 5.5858 44 1 3.7686 2.8414 3.0031 45 1 4.1151 1.9155 1.5230 46 1 6.4617 0.5253 4.0687 47 1 6.3482 1.5230 2.5991 48 1 5.4129 3.3829 3.8732 49 1 5.3340 2.3838 5.3441 50 1 6.9134 2.8480 4.6673 51 1 5.4629 0.2988 0.9034 52 1 5.4860 -1.8560 -0.2881 53 1 4.4890 -3.8507 0.7558 54 1 3.4738 -3.6921 2.9936 55 1 3.4571 -1.5389 4.1880 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663718354.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:59 Heat of formation + Delta-G solvation = -15.156600 kcal Electronic energy + Delta-G solvation = -29181.207139 eV Core-core repulsion = 25795.296368 eV Total energy + Delta-G solvation = -3385.910770 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 317.241 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.62135 -39.22059 -37.37951 -35.72895 -34.34680 -31.87383 -31.80493 -31.57471 -30.33628 -29.30028 -27.27575 -25.33309 -24.62218 -24.09051 -23.47108 -22.71970 -21.92741 -20.42200 -19.62587 -18.94739 -17.68289 -16.70944 -16.58437 -16.26034 -16.07340 -16.03064 -15.50217 -15.38815 -15.06800 -14.70352 -14.45945 -14.25627 -14.09900 -13.98629 -13.81903 -13.63553 -13.52338 -13.30603 -13.10298 -12.89093 -12.77040 -12.68201 -12.64449 -12.41785 -12.27358 -12.02503 -11.92214 -11.87081 -11.80038 -11.57632 -11.42506 -11.37391 -11.19096 -11.12461 -10.97617 -10.88465 -10.70496 -9.58634 -9.32335 -8.78530 -8.22401 -6.21307 0.71729 0.73649 1.30388 1.32533 1.42433 2.35276 3.10262 3.11267 3.26525 3.81073 3.95559 4.06207 4.13675 4.20637 4.26831 4.31813 4.38822 4.43449 4.45840 4.49840 4.54884 4.61165 4.63696 4.70447 4.73015 4.76955 4.83649 4.84152 4.89035 4.92580 4.98877 5.02551 5.06038 5.10423 5.12841 5.14162 5.18986 5.19449 5.29410 5.30864 5.36060 5.41756 5.42538 5.47940 5.50173 5.54630 5.66210 5.75322 5.79012 5.80548 5.82127 6.01177 6.16377 6.35320 6.55588 6.80166 6.88974 7.41215 8.93915 Molecular weight = 317.24amu Principal moments of inertia in cm(-1) A = 0.008442 B = 0.006154 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3316.130206 B = 4549.039872 C = 5673.482096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.063 4.063 4 C -0.122 4.122 5 C -0.142 4.142 6 C 0.065 3.935 7 N -0.521 5.521 8 C 0.178 3.822 9 C -0.495 4.495 10 H 0.049 0.951 11 C 0.010 3.990 12 N -0.947 5.947 13 Si 0.932 3.068 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.252 1.252 17 C 0.063 3.937 18 C -0.045 4.045 19 H 0.050 0.950 20 C -0.104 4.104 21 C -0.152 4.152 22 C -0.045 4.045 23 C -0.116 4.116 24 C -0.119 4.119 25 C -0.136 4.136 26 C -0.131 4.131 27 C -0.129 4.129 28 H 0.063 0.937 29 H 0.034 0.966 30 H 0.033 0.967 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.021 0.979 41 H 0.020 0.980 42 H -0.025 1.025 43 H 0.262 0.738 44 H 0.029 0.971 45 H 0.084 0.916 46 H 0.064 0.936 47 H 0.079 0.921 48 H 0.054 0.946 49 H 0.039 0.961 50 H 0.071 0.929 51 H 0.131 0.869 52 H 0.141 0.859 53 H 0.134 0.866 54 H 0.118 0.882 55 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.016 1.165 -10.879 20.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.127 4.127 3 C -0.082 4.082 4 C -0.160 4.160 5 C -0.199 4.199 6 C -0.063 4.063 7 N -0.244 5.244 8 C 0.050 3.950 9 C -0.534 4.534 10 H 0.067 0.933 11 C -0.187 4.187 12 N -0.589 5.589 13 Si 0.757 3.243 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.176 1.176 17 C -0.064 4.064 18 C -0.064 4.064 19 H 0.068 0.932 20 C -0.142 4.142 21 C -0.210 4.210 22 C -0.045 4.045 23 C -0.134 4.134 24 C -0.137 4.137 25 C -0.154 4.154 26 C -0.149 4.149 27 C -0.148 4.148 28 H 0.082 0.918 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.039 0.961 41 H 0.038 0.962 42 H -0.007 1.007 43 H 0.071 0.929 44 H 0.047 0.953 45 H 0.103 0.897 46 H 0.083 0.917 47 H 0.098 0.902 48 H 0.073 0.927 49 H 0.059 0.941 50 H 0.090 0.910 51 H 0.149 0.851 52 H 0.159 0.841 53 H 0.152 0.848 54 H 0.136 0.864 55 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 16.848 0.637 -10.842 20.045 hybrid contribution -1.021 1.094 1.567 2.167 sum 15.827 1.732 -9.275 18.426 Atomic orbital electron populations 1.21813 0.97622 1.00117 1.00913 1.21170 0.94387 0.96440 1.00699 1.21038 0.99705 0.94864 0.92607 1.21608 1.00498 0.99239 0.94653 1.21711 1.01215 1.00808 0.96189 1.22108 0.99024 0.94099 0.91039 1.61755 1.01161 1.58501 1.03022 1.19899 0.93249 0.92440 0.89388 1.21299 1.01036 1.25199 1.05835 0.93282 1.25694 0.95028 0.97747 1.00206 1.70060 1.13535 1.42417 1.32881 0.85939 0.79604 0.79705 0.79024 1.19912 1.21127 1.17624 1.22264 0.88842 0.95280 1.00060 1.20241 0.96311 0.92274 0.97571 0.93155 1.21486 0.94041 0.97607 1.01062 1.21821 1.02119 0.97626 0.99399 1.19615 0.96128 0.93749 0.95016 1.21003 1.00208 0.98218 0.93928 1.21305 0.99594 0.92482 1.00282 1.21258 0.99354 0.99620 0.95135 1.21220 1.00093 0.97397 0.96228 1.21047 0.99801 0.93845 1.00057 0.91825 0.94679 0.94780 0.91983 0.93340 0.90941 0.92612 0.92064 0.92889 0.92132 0.92146 0.92763 0.96062 0.96194 1.00746 0.92902 0.95262 0.89727 0.91720 0.90197 0.92741 0.94149 0.91030 0.85119 0.84104 0.84767 0.86400 0.88844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.33 9.19 71.98 0.66 -4.67 16 2 C -0.09 -2.92 5.31 30.59 0.16 -2.75 16 3 C -0.06 -1.85 2.20 -10.79 -0.02 -1.87 16 4 C -0.12 -3.02 5.11 30.59 0.16 -2.86 16 5 C -0.14 -2.80 9.53 71.98 0.69 -2.11 16 6 C 0.07 2.39 4.04 86.31 0.35 2.74 16 7 N -0.52 -20.36 3.40 -900.77 -3.07 -23.43 16 8 C 0.18 8.44 3.53 85.56 0.30 8.74 16 9 C -0.50 -28.27 8.84 25.60 0.23 -28.04 16 10 H 0.05 3.12 6.69 -2.91 -0.02 3.10 16 11 C 0.01 0.58 5.47 84.65 0.46 1.04 16 12 N -0.95 -59.70 13.96 21.45 0.30 -59.40 16 13 Si 0.93 45.01 27.45 68.60 1.88 46.89 16 14 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 15 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 16 H -0.25 -11.43 6.60 99.48 0.66 -10.78 16 17 C 0.06 1.97 3.97 86.30 0.34 2.31 16 18 C -0.04 -1.34 2.08 -11.54 -0.02 -1.36 16 19 H 0.05 1.81 6.41 -2.39 -0.02 1.79 16 20 C -0.10 -2.34 5.13 30.59 0.16 -2.19 16 21 C -0.15 -3.30 9.53 71.98 0.69 -2.62 16 22 C -0.05 -1.35 4.53 -19.87 -0.09 -1.44 16 23 C -0.12 -2.88 8.70 22.27 0.19 -2.68 16 24 C -0.12 -2.72 10.05 22.27 0.22 -2.50 16 25 C -0.14 -3.39 10.05 22.27 0.22 -3.17 16 26 C -0.13 -3.92 10.05 22.27 0.22 -3.70 16 27 C -0.13 -4.37 9.67 22.27 0.22 -4.16 16 28 H 0.06 1.97 6.28 -2.39 -0.01 1.95 16 29 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 30 H 0.03 1.51 5.11 -2.39 -0.01 1.49 16 31 H 0.06 1.75 6.93 -2.39 -0.02 1.73 16 32 H 0.05 1.91 7.62 -2.39 -0.02 1.89 16 33 H 0.07 1.94 6.68 -2.39 -0.02 1.92 16 34 H 0.06 1.51 6.06 -2.39 -0.01 1.50 16 35 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.05 1.08 6.98 -2.38 -0.02 1.06 16 37 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 39 H 0.05 2.38 5.23 -2.39 -0.01 2.37 16 40 H 0.02 0.73 8.00 -2.39 -0.02 0.71 16 41 H 0.02 0.97 6.00 -2.39 -0.01 0.96 16 42 H -0.03 -1.21 7.18 -2.39 -0.02 -1.22 16 43 H 0.26 15.56 8.31 -92.71 -0.77 14.78 16 44 H 0.03 0.91 6.31 -2.39 -0.02 0.90 16 45 H 0.08 2.27 5.50 -2.39 -0.01 2.26 16 46 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.08 1.51 7.60 -2.39 -0.02 1.49 16 48 H 0.05 1.19 6.76 -2.39 -0.02 1.17 16 49 H 0.04 0.98 8.14 -2.39 -0.02 0.97 16 50 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 51 H 0.13 2.68 7.14 -2.91 -0.02 2.66 16 52 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 53 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 54 H 0.12 3.26 8.06 -2.91 -0.02 3.24 16 55 H 0.09 3.49 7.95 -2.91 -0.02 3.47 16 Total: -1.00 -65.56 408.52 5.03 -60.52 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: 0.78 Total: 26.71 kcal Atomic # 6 Polarization: -56.44 SS G_CDS: 5.13 Total: -51.31 kcal Atomic # 7 Polarization: -80.06 SS G_CDS: -2.77 Total: -82.82 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.88 Total: 46.89 kcal Total: -65.56 5.03 -60.52 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663718354.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.368 kcal (2) G-P(sol) polarization free energy of solvation -65.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds