Wall clock time and date at job start Tue Mar 31 2020 11:27:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.52998 * 109.47057 * 2 1
4 4 C 1.52999 * 109.47368 * 304.22451 * 3 2 1
5 5 C 1.52997 * 109.47210 * 294.31965 * 4 3 2
6 6 C 1.53006 * 109.46817 * 64.22626 * 3 2 1
7 7 N 1.46900 * 109.46981 * 64.46142 * 6 3 2
8 8 C 1.46900 * 110.99761 * 199.84976 * 7 6 3
9 9 C 1.50703 * 109.47291 * 71.49313 * 8 7 6
10 10 H 1.07995 * 119.99743 * 2.80662 * 9 8 7
11 11 C 1.37871 * 119.99938 * 182.81592 * 9 8 7
12 12 N 1.31525 * 119.99909 * 184.92408 * 11 9 8
13 13 Si 1.86794 * 120.00339 * 4.91734 * 11 9 8
14 14 H 1.48503 * 109.47326 * 94.33034 * 13 11 9
15 15 H 1.48505 * 109.47370 * 214.32734 * 13 11 9
16 16 H 1.48497 * 109.47287 * 334.32795 * 13 11 9
17 17 C 1.46901 * 111.00128 * 75.89641 * 7 6 3
18 18 C 1.52999 * 109.47206 * 200.36258 * 17 7 6
19 19 H 1.08992 * 109.47420 * 305.74769 * 18 17 7
20 20 C 1.52999 * 109.46941 * 185.74624 * 18 17 7
21 21 C 1.52999 * 109.47009 * 65.48327 * 20 18 17
22 22 C 1.50708 * 109.46729 * 65.75126 * 18 17 7
23 23 C 1.38230 * 120.00177 * 59.71977 * 22 18 17
24 24 C 1.38237 * 119.99938 * 179.80527 * 23 22 18
25 25 C 1.38230 * 119.99918 * 0.40815 * 24 23 22
26 26 C 1.38234 * 120.00185 * 359.84788 * 25 24 23
27 27 C 1.38229 * 119.99520 * 239.99697 * 22 18 17
28 28 H 1.09002 * 109.47188 * 60.92778 * 1 2 3
29 29 H 1.09006 * 109.46734 * 180.92491 * 1 2 3
30 30 H 1.09000 * 109.46750 * 300.92378 * 1 2 3
31 31 H 1.09003 * 109.46827 * 240.00687 * 2 1 3
32 32 H 1.09000 * 109.47237 * 120.00606 * 2 1 3
33 33 H 1.09000 * 109.47246 * 184.22145 * 3 2 1
34 34 H 1.09001 * 109.47113 * 54.32179 * 4 3 2
35 35 H 1.09000 * 109.46551 * 174.31924 * 4 3 2
36 36 H 1.09006 * 109.46784 * 65.94846 * 5 4 3
37 37 H 1.08998 * 109.47208 * 185.94874 * 5 4 3
38 38 H 1.09005 * 109.47153 * 305.95029 * 5 4 3
39 39 H 1.08999 * 109.46906 * 304.46378 * 6 3 2
40 40 H 1.08998 * 109.46812 * 184.46157 * 6 3 2
41 41 H 1.09004 * 109.47109 * 191.49653 * 8 7 6
42 42 H 1.09003 * 109.47384 * 311.49339 * 8 7 6
43 43 H 0.96997 * 119.99903 * 179.97438 * 12 11 9
44 44 H 1.09003 * 109.47019 * 80.36308 * 17 7 6
45 45 H 1.08999 * 109.47058 * 320.37222 * 17 7 6
46 46 H 1.09000 * 109.46804 * 185.48566 * 20 18 17
47 47 H 1.09001 * 109.47204 * 305.47901 * 20 18 17
48 48 H 1.08996 * 109.47205 * 293.79679 * 21 20 18
49 49 H 1.08994 * 109.47109 * 53.80348 * 21 20 18
50 50 H 1.09004 * 109.46718 * 173.80042 * 21 20 18
51 51 H 1.08009 * 120.00256 * 0.02562 * 23 22 18
52 52 H 1.08004 * 119.99867 * 180.23111 * 24 23 22
53 53 H 1.07999 * 119.99796 * 179.82579 * 25 24 23
54 54 H 1.08002 * 120.00456 * 179.97438 * 26 25 24
55 55 H 1.07995 * 120.00430 * 359.97438 * 27 22 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 1.4451 2.1938 -1.1927
5 6 1.9798 1.5911 -2.4933
6 6 1.6186 2.1323 1.2991
7 7 2.2755 1.4761 2.4374
8 6 1.5702 1.7686 3.6923
9 6 0.2564 1.0306 3.7141
10 1 -0.0061 0.3714 2.9000
11 6 -0.6105 1.1974 4.7731
12 7 -1.7117 0.4814 4.8405
13 14 -0.2209 2.4399 6.1124
14 1 -0.8911 3.7283 5.8024
15 1 -0.7096 1.9295 7.4185
16 1 1.2476 2.6497 6.1810
17 6 3.6894 1.8650 2.5251
18 6 4.4530 0.8288 3.3522
19 1 3.9651 0.7043 4.3188
20 6 5.8913 1.3053 3.5645
21 6 5.8876 2.5710 4.4241
22 6 4.4631 -0.4890 2.6210
23 6 5.0282 -0.5768 1.3626
24 6 5.0411 -1.7865 0.6936
25 6 4.4814 -2.9063 1.2796
26 6 3.9115 -2.8173 2.5359
27 6 3.9022 -1.6085 3.2065
28 1 -0.3634 0.4994 -0.8982
29 1 -0.3633 -1.0276 0.0166
30 1 -0.3633 0.5281 0.8816
31 1 1.8933 -0.5137 -0.8901
32 1 1.8934 -0.5139 0.8899
33 1 3.1274 1.4434 -0.0756
34 1 0.3588 2.1070 -1.1716
35 1 1.7267 3.2453 -1.1367
36 1 1.6100 0.5712 -2.6001
37 1 1.6408 2.1908 -3.3380
38 1 3.0695 1.5817 -2.4684
39 1 0.5369 2.0616 1.4136
40 1 1.9126 3.1814 1.2652
41 1 2.1813 1.4475 4.5359
42 1 1.3860 2.8405 3.7644
43 1 -2.3214 0.5984 5.5858
44 1 3.7686 2.8414 3.0031
45 1 4.1151 1.9155 1.5230
46 1 6.4617 0.5253 4.0687
47 1 6.3482 1.5230 2.5991
48 1 5.4129 3.3829 3.8732
49 1 5.3340 2.3838 5.3441
50 1 6.9134 2.8480 4.6673
51 1 5.4629 0.2988 0.9034
52 1 5.4860 -1.8560 -0.2881
53 1 4.4890 -3.8507 0.7558
54 1 3.4738 -3.6921 2.9936
55 1 3.4571 -1.5389 4.1880
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001663718354.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:27:59
Heat of formation + Delta-G solvation = -15.156600 kcal
Electronic energy + Delta-G solvation = -29181.207139 eV
Core-core repulsion = 25795.296368 eV
Total energy + Delta-G solvation = -3385.910770 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 317.241 amu
Computer time = 1.22 seconds
Orbital eigenvalues (eV)
-40.62135 -39.22059 -37.37951 -35.72895 -34.34680 -31.87383 -31.80493 -31.57471
-30.33628 -29.30028 -27.27575 -25.33309 -24.62218 -24.09051 -23.47108 -22.71970
-21.92741 -20.42200 -19.62587 -18.94739 -17.68289 -16.70944 -16.58437 -16.26034
-16.07340 -16.03064 -15.50217 -15.38815 -15.06800 -14.70352 -14.45945 -14.25627
-14.09900 -13.98629 -13.81903 -13.63553 -13.52338 -13.30603 -13.10298 -12.89093
-12.77040 -12.68201 -12.64449 -12.41785 -12.27358 -12.02503 -11.92214 -11.87081
-11.80038 -11.57632 -11.42506 -11.37391 -11.19096 -11.12461 -10.97617 -10.88465
-10.70496 -9.58634 -9.32335 -8.78530 -8.22401 -6.21307 0.71729 0.73649
1.30388 1.32533 1.42433 2.35276 3.10262 3.11267 3.26525 3.81073
3.95559 4.06207 4.13675 4.20637 4.26831 4.31813 4.38822 4.43449
4.45840 4.49840 4.54884 4.61165 4.63696 4.70447 4.73015 4.76955
4.83649 4.84152 4.89035 4.92580 4.98877 5.02551 5.06038 5.10423
5.12841 5.14162 5.18986 5.19449 5.29410 5.30864 5.36060 5.41756
5.42538 5.47940 5.50173 5.54630 5.66210 5.75322 5.79012 5.80548
5.82127 6.01177 6.16377 6.35320 6.55588 6.80166 6.88974 7.41215
8.93915
Molecular weight = 317.24amu
Principal moments of inertia in cm(-1)
A = 0.008442 B = 0.006154 C = 0.004934
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3316.130206 B = 4549.039872 C = 5673.482096
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.089 4.089
3 C -0.063 4.063
4 C -0.122 4.122
5 C -0.142 4.142
6 C 0.065 3.935
7 N -0.521 5.521
8 C 0.178 3.822
9 C -0.495 4.495
10 H 0.049 0.951
11 C 0.010 3.990
12 N -0.947 5.947
13 Si 0.932 3.068
14 H -0.274 1.274
15 H -0.285 1.285
16 H -0.252 1.252
17 C 0.063 3.937
18 C -0.045 4.045
19 H 0.050 0.950
20 C -0.104 4.104
21 C -0.152 4.152
22 C -0.045 4.045
23 C -0.116 4.116
24 C -0.119 4.119
25 C -0.136 4.136
26 C -0.131 4.131
27 C -0.129 4.129
28 H 0.063 0.937
29 H 0.034 0.966
30 H 0.033 0.967
31 H 0.062 0.938
32 H 0.048 0.952
33 H 0.072 0.928
34 H 0.055 0.945
35 H 0.061 0.939
36 H 0.052 0.948
37 H 0.060 0.940
38 H 0.059 0.941
39 H 0.054 0.946
40 H 0.021 0.979
41 H 0.020 0.980
42 H -0.025 1.025
43 H 0.262 0.738
44 H 0.029 0.971
45 H 0.084 0.916
46 H 0.064 0.936
47 H 0.079 0.921
48 H 0.054 0.946
49 H 0.039 0.961
50 H 0.071 0.929
51 H 0.131 0.869
52 H 0.141 0.859
53 H 0.134 0.866
54 H 0.118 0.882
55 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.016 1.165 -10.879 20.230
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.127 4.127
3 C -0.082 4.082
4 C -0.160 4.160
5 C -0.199 4.199
6 C -0.063 4.063
7 N -0.244 5.244
8 C 0.050 3.950
9 C -0.534 4.534
10 H 0.067 0.933
11 C -0.187 4.187
12 N -0.589 5.589
13 Si 0.757 3.243
14 H -0.199 1.199
15 H -0.211 1.211
16 H -0.176 1.176
17 C -0.064 4.064
18 C -0.064 4.064
19 H 0.068 0.932
20 C -0.142 4.142
21 C -0.210 4.210
22 C -0.045 4.045
23 C -0.134 4.134
24 C -0.137 4.137
25 C -0.154 4.154
26 C -0.149 4.149
27 C -0.148 4.148
28 H 0.082 0.918
29 H 0.053 0.947
30 H 0.052 0.948
31 H 0.080 0.920
32 H 0.067 0.933
33 H 0.091 0.909
34 H 0.074 0.926
35 H 0.079 0.921
36 H 0.071 0.929
37 H 0.079 0.921
38 H 0.079 0.921
39 H 0.072 0.928
40 H 0.039 0.961
41 H 0.038 0.962
42 H -0.007 1.007
43 H 0.071 0.929
44 H 0.047 0.953
45 H 0.103 0.897
46 H 0.083 0.917
47 H 0.098 0.902
48 H 0.073 0.927
49 H 0.059 0.941
50 H 0.090 0.910
51 H 0.149 0.851
52 H 0.159 0.841
53 H 0.152 0.848
54 H 0.136 0.864
55 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges 16.848 0.637 -10.842 20.045
hybrid contribution -1.021 1.094 1.567 2.167
sum 15.827 1.732 -9.275 18.426
Atomic orbital electron populations
1.21813 0.97622 1.00117 1.00913 1.21170 0.94387 0.96440 1.00699
1.21038 0.99705 0.94864 0.92607 1.21608 1.00498 0.99239 0.94653
1.21711 1.01215 1.00808 0.96189 1.22108 0.99024 0.94099 0.91039
1.61755 1.01161 1.58501 1.03022 1.19899 0.93249 0.92440 0.89388
1.21299 1.01036 1.25199 1.05835 0.93282 1.25694 0.95028 0.97747
1.00206 1.70060 1.13535 1.42417 1.32881 0.85939 0.79604 0.79705
0.79024 1.19912 1.21127 1.17624 1.22264 0.88842 0.95280 1.00060
1.20241 0.96311 0.92274 0.97571 0.93155 1.21486 0.94041 0.97607
1.01062 1.21821 1.02119 0.97626 0.99399 1.19615 0.96128 0.93749
0.95016 1.21003 1.00208 0.98218 0.93928 1.21305 0.99594 0.92482
1.00282 1.21258 0.99354 0.99620 0.95135 1.21220 1.00093 0.97397
0.96228 1.21047 0.99801 0.93845 1.00057 0.91825 0.94679 0.94780
0.91983 0.93340 0.90941 0.92612 0.92064 0.92889 0.92132 0.92146
0.92763 0.96062 0.96194 1.00746 0.92902 0.95262 0.89727 0.91720
0.90197 0.92741 0.94149 0.91030 0.85119 0.84104 0.84767 0.86400
0.88844
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -5.33 9.19 71.98 0.66 -4.67 16
2 C -0.09 -2.92 5.31 30.59 0.16 -2.75 16
3 C -0.06 -1.85 2.20 -10.79 -0.02 -1.87 16
4 C -0.12 -3.02 5.11 30.59 0.16 -2.86 16
5 C -0.14 -2.80 9.53 71.98 0.69 -2.11 16
6 C 0.07 2.39 4.04 86.31 0.35 2.74 16
7 N -0.52 -20.36 3.40 -900.77 -3.07 -23.43 16
8 C 0.18 8.44 3.53 85.56 0.30 8.74 16
9 C -0.50 -28.27 8.84 25.60 0.23 -28.04 16
10 H 0.05 3.12 6.69 -2.91 -0.02 3.10 16
11 C 0.01 0.58 5.47 84.65 0.46 1.04 16
12 N -0.95 -59.70 13.96 21.45 0.30 -59.40 16
13 Si 0.93 45.01 27.45 68.60 1.88 46.89 16
14 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16
15 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16
16 H -0.25 -11.43 6.60 99.48 0.66 -10.78 16
17 C 0.06 1.97 3.97 86.30 0.34 2.31 16
18 C -0.04 -1.34 2.08 -11.54 -0.02 -1.36 16
19 H 0.05 1.81 6.41 -2.39 -0.02 1.79 16
20 C -0.10 -2.34 5.13 30.59 0.16 -2.19 16
21 C -0.15 -3.30 9.53 71.98 0.69 -2.62 16
22 C -0.05 -1.35 4.53 -19.87 -0.09 -1.44 16
23 C -0.12 -2.88 8.70 22.27 0.19 -2.68 16
24 C -0.12 -2.72 10.05 22.27 0.22 -2.50 16
25 C -0.14 -3.39 10.05 22.27 0.22 -3.17 16
26 C -0.13 -3.92 10.05 22.27 0.22 -3.70 16
27 C -0.13 -4.37 9.67 22.27 0.22 -4.16 16
28 H 0.06 1.97 6.28 -2.39 -0.01 1.95 16
29 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16
30 H 0.03 1.51 5.11 -2.39 -0.01 1.49 16
31 H 0.06 1.75 6.93 -2.39 -0.02 1.73 16
32 H 0.05 1.91 7.62 -2.39 -0.02 1.89 16
33 H 0.07 1.94 6.68 -2.39 -0.02 1.92 16
34 H 0.06 1.51 6.06 -2.39 -0.01 1.50 16
35 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16
36 H 0.05 1.08 6.98 -2.38 -0.02 1.06 16
37 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16
38 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16
39 H 0.05 2.38 5.23 -2.39 -0.01 2.37 16
40 H 0.02 0.73 8.00 -2.39 -0.02 0.71 16
41 H 0.02 0.97 6.00 -2.39 -0.01 0.96 16
42 H -0.03 -1.21 7.18 -2.39 -0.02 -1.22 16
43 H 0.26 15.56 8.31 -92.71 -0.77 14.78 16
44 H 0.03 0.91 6.31 -2.39 -0.02 0.90 16
45 H 0.08 2.27 5.50 -2.39 -0.01 2.26 16
46 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16
47 H 0.08 1.51 7.60 -2.39 -0.02 1.49 16
48 H 0.05 1.19 6.76 -2.39 -0.02 1.17 16
49 H 0.04 0.98 8.14 -2.39 -0.02 0.97 16
50 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16
51 H 0.13 2.68 7.14 -2.91 -0.02 2.66 16
52 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16
53 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16
54 H 0.12 3.26 8.06 -2.91 -0.02 3.24 16
55 H 0.09 3.49 7.95 -2.91 -0.02 3.47 16
Total: -1.00 -65.56 408.52 5.03 -60.52
By element:
Atomic # 1 Polarization: 25.93 SS G_CDS: 0.78 Total: 26.71 kcal
Atomic # 6 Polarization: -56.44 SS G_CDS: 5.13 Total: -51.31 kcal
Atomic # 7 Polarization: -80.06 SS G_CDS: -2.77 Total: -82.82 kcal
Atomic # 14 Polarization: 45.01 SS G_CDS: 1.88 Total: 46.89 kcal
Total: -65.56 5.03 -60.52 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001663718354.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.368 kcal
(2) G-P(sol) polarization free energy of solvation -65.556 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.189 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.032 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.524 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.157 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.22 seconds