Wall clock time and date at job start Tue Mar 31 2020 11:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29368 * 1 3 3 Si 1.86808 * 119.99979 * 2 1 4 4 H 1.48504 * 109.46653 * 269.99649 * 3 2 1 5 5 H 1.48499 * 109.47237 * 29.99105 * 3 2 1 6 6 H 1.48494 * 109.47216 * 149.99658 * 3 2 1 7 7 C 1.46627 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99908 * 0.02562 * 7 2 1 9 9 O 1.22323 * 119.99840 * 180.02562 * 7 2 1 10 10 C 1.35721 * 116.99788 * 185.04764 * 9 7 2 11 11 C 1.38988 * 120.03256 * 354.17592 * 10 9 7 12 12 C 1.38118 * 120.06989 * 179.69807 * 11 10 9 13 13 C 1.38204 * 120.14540 * 0.59778 * 12 11 10 14 14 C 1.38960 * 120.06662 * 359.68346 * 13 12 11 15 15 N 1.39830 * 120.03707 * 180.02562 * 14 13 12 16 16 C 1.34778 * 119.99706 * 215.16329 * 15 14 13 17 17 O 1.21701 * 120.00335 * 355.52892 * 16 15 14 18 18 C 1.46618 * 119.99723 * 175.52419 * 16 15 14 19 19 C 1.36562 * 125.98927 * 180.02562 * 18 16 15 20 20 C 1.40358 * 106.71053 * 180.02562 * 19 18 16 21 21 C 1.35139 * 107.11647 * 359.97438 * 20 19 18 22 22 N 1.48021 * 125.61783 * 180.02562 * 21 20 19 23 23 O 1.31705 * 119.99494 * 0.02562 * 22 21 20 24 24 O 1.31695 * 119.99862 * 179.97438 * 22 21 20 25 25 O 1.33941 * 108.76673 * 359.73603 * 21 20 19 26 26 C 1.38753 * 120.03398 * 174.45006 * 10 9 7 27 27 H 0.96998 * 119.99745 * 0.02562 * 1 2 3 28 28 H 1.07998 * 119.96482 * 0.02562 * 11 10 9 29 29 H 1.07999 * 119.92901 * 180.28085 * 12 11 10 30 30 H 1.07994 * 119.97155 * 179.69933 * 13 12 11 31 31 H 0.96998 * 120.00024 * 35.15484 * 15 14 13 32 32 H 1.07997 * 126.64536 * 0.02562 * 19 18 16 33 33 H 1.08003 * 126.44618 * 179.97438 * 20 19 18 34 34 H 1.07995 * 120.07474 * 0.03015 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2937 0.0000 0.0000 3 14 2.2277 1.6178 0.0000 4 1 2.4752 2.0464 -1.4001 5 1 1.4251 2.6528 0.6998 6 1 3.5252 1.4403 0.7001 7 6 2.0268 -1.2698 0.0006 8 1 1.4869 -2.2051 0.0006 9 8 3.2501 -1.2698 0.0010 10 6 3.8663 -2.4744 -0.1049 11 6 3.1155 -3.6439 -0.0856 12 6 3.7412 -4.8699 -0.1996 13 6 5.1162 -4.9388 -0.3207 14 6 5.8731 -3.7735 -0.3347 15 7 7.2642 -3.8439 -0.4578 16 6 8.0438 -2.9551 0.1894 17 8 7.5364 -2.0426 0.8147 18 6 9.5031 -3.0877 0.1402 19 6 10.4049 -2.2615 0.7478 20 6 11.6804 -2.7579 0.4367 21 6 11.5037 -3.8519 -0.3368 22 7 12.5836 -4.6953 -0.8967 23 8 13.8435 -4.4006 -0.6513 24 8 12.2844 -5.7409 -1.6394 25 8 10.1903 -4.0509 -0.5082 26 6 5.2469 -2.5399 -0.2267 27 1 -0.4850 0.8400 -0.0004 28 1 2.0412 -3.5937 0.0133 29 1 3.1552 -5.7770 -0.1889 30 1 5.6030 -5.8991 -0.4047 31 1 7.6681 -4.5324 -1.0089 32 1 10.1802 -1.3942 1.3508 33 1 12.6254 -2.3436 0.7556 34 1 5.8329 -1.6328 -0.2370 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036681663.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:18 Heat of formation + Delta-G solvation = 67.205828 kcal Electronic energy + Delta-G solvation = -24700.193237 eV Core-core repulsion = 20573.262586 eV Total energy + Delta-G solvation = -4126.930651 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.078 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -43.99818 -40.62358 -39.99253 -39.27988 -37.31243 -35.20945 -34.71139 -34.06963 -32.81269 -31.75210 -29.86566 -29.02802 -27.29773 -25.25613 -23.99385 -22.90743 -22.32965 -21.34777 -20.76362 -19.85073 -18.73216 -18.57831 -18.49858 -17.90009 -17.63360 -16.12847 -15.96453 -15.30917 -15.23667 -15.17402 -14.65152 -14.55702 -14.50301 -14.12550 -14.08008 -13.84219 -12.85402 -12.80767 -12.48946 -12.02985 -11.87050 -11.84820 -11.44647 -11.30034 -11.23610 -11.12461 -10.97300 -10.60679 -10.30140 -10.01020 -9.97968 -9.32412 -9.12542 -7.94183 -7.47789 -6.79289 -3.77462 -1.41142 -0.29860 0.28736 1.26608 1.80864 1.96782 2.21370 2.62225 2.73652 3.05958 3.09630 3.22661 3.57962 3.91844 3.98409 4.01878 4.33919 4.43927 4.71065 4.72804 4.96205 5.05574 5.12830 5.39363 5.58650 5.74254 5.91824 6.12041 6.17793 6.25873 6.38593 6.69293 6.89360 7.10485 7.30091 7.32832 7.38071 7.62733 7.74180 7.91271 8.46017 9.81550 10.25683 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.022628 B = 0.002696 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.133191 B =10381.907672 C =11402.700672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.063 3.937 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.253 1.253 7 C -0.407 4.407 8 H 0.099 0.901 9 O -0.138 6.138 10 C 0.127 3.873 11 C -0.245 4.245 12 C -0.047 4.047 13 C -0.248 4.248 14 C 0.164 3.836 15 N -0.642 5.642 16 C 0.587 3.413 17 O -0.468 6.468 18 C 0.031 3.969 19 C -0.135 4.135 20 C -0.070 4.070 21 C 0.071 3.929 22 N 0.016 4.984 23 O -0.142 6.142 24 O -0.138 6.138 25 O -0.138 6.138 26 C -0.189 4.189 27 H 0.291 0.709 28 H 0.129 0.871 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.414 0.586 32 H 0.193 0.807 33 H 0.192 0.808 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.814 -4.919 0.336 19.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.150 4.150 3 Si 0.731 3.269 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.176 1.176 7 C -0.484 4.484 8 H 0.116 0.884 9 O -0.036 6.036 10 C 0.072 3.928 11 C -0.266 4.266 12 C -0.066 4.066 13 C -0.270 4.270 14 C 0.072 3.928 15 N -0.286 5.286 16 C 0.371 3.629 17 O -0.342 6.342 18 C -0.025 4.025 19 C -0.156 4.156 20 C -0.091 4.091 21 C -0.066 4.066 22 N 0.493 4.507 23 O -0.330 6.330 24 O -0.335 6.335 25 O -0.034 6.034 26 C -0.210 4.210 27 H 0.103 0.897 28 H 0.147 0.853 29 H 0.130 0.870 30 H 0.126 0.874 31 H 0.250 0.750 32 H 0.211 0.789 33 H 0.209 0.791 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 17.699 -3.709 0.906 18.107 hybrid contribution 0.608 -0.113 -0.443 0.761 sum 18.308 -3.822 0.463 18.708 Atomic orbital electron populations 1.68559 1.07626 1.30196 1.39449 1.26212 0.94675 0.98474 0.95677 0.86158 0.80888 0.80263 0.79608 1.19308 1.20243 1.17602 1.20286 0.80585 0.95827 1.51737 0.88364 1.79933 1.22413 1.28076 1.73129 1.18780 0.91162 0.84382 0.98510 1.20948 1.00781 0.91789 1.13044 1.20430 0.93228 0.96583 0.96337 1.20130 0.94105 0.95165 1.17557 1.17022 0.79335 0.93955 1.02537 1.43212 1.06052 1.32204 1.47174 1.16450 0.81549 0.83829 0.81089 1.91042 1.70501 1.31146 1.41502 1.23181 0.93631 0.88890 0.96814 1.22247 0.89016 1.02260 1.02085 1.21932 1.01823 0.91514 0.93879 1.21336 0.79695 0.97228 1.08346 1.49176 1.01594 1.00712 0.99228 1.96361 0.93768 1.77458 1.65397 1.96375 1.90333 1.13578 1.33243 1.84013 1.14566 1.45629 1.59164 1.19872 0.92020 0.96591 1.12525 0.89650 0.85307 0.87005 0.87445 0.75015 0.78931 0.79056 0.85291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 56. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.00 13.88 55.99 0.78 -21.23 16 2 C 0.06 1.64 5.69 -15.21 -0.09 1.55 16 3 Si 0.91 20.10 28.83 -169.99 -4.90 15.20 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.25 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.41 -10.94 9.98 34.12 0.34 -10.60 16 8 H 0.10 2.71 5.14 -52.49 -0.27 2.44 16 9 O -0.14 -3.56 8.23 20.98 0.17 -3.39 16 10 C 0.13 2.94 6.58 -39.11 -0.26 2.69 16 11 C -0.25 -5.24 9.12 -39.35 -0.36 -5.60 16 12 C -0.05 -0.83 10.03 -39.64 -0.40 -1.23 16 13 C -0.25 -4.08 9.97 -39.33 -0.39 -4.47 16 14 C 0.16 2.82 6.29 -83.75 -0.53 2.29 16 15 N -0.64 -8.51 5.33 -11.08 -0.06 -8.57 16 16 C 0.59 7.75 7.62 -12.88 -0.10 7.65 16 17 O -0.47 -7.79 14.30 5.19 0.07 -7.72 16 18 C 0.03 0.31 7.13 -36.81 -0.26 0.05 16 19 C -0.14 -1.01 10.62 -39.39 -0.42 -1.42 16 20 C -0.07 -0.46 10.55 -39.89 -0.42 -0.88 16 21 C 0.07 0.68 8.31 -10.73 -0.09 0.59 16 22 N 0.02 0.18 4.98 32.67 0.16 0.34 16 23 O -0.14 -1.56 19.74 -31.57 -0.62 -2.19 16 24 O -0.14 -1.76 19.97 -33.50 -0.67 -2.43 16 25 O -0.14 -1.38 10.41 4.12 0.04 -1.34 16 26 C -0.19 -3.90 8.64 -39.19 -0.34 -4.24 16 27 H 0.29 7.00 8.26 -40.82 -0.34 6.66 16 28 H 0.13 2.85 5.69 -52.49 -0.30 2.55 16 29 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 30 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.41 4.18 8.58 -40.82 -0.35 3.83 16 32 H 0.19 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.19 0.66 8.06 -52.48 -0.42 0.24 16 34 H 0.13 2.71 6.23 -52.49 -0.33 2.38 16 LS Contribution 323.66 15.07 4.88 4.88 Total: -1.00 -29.68 323.66 -5.52 -35.20 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -2.07 Total: 4.87 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -3.31 Total: -13.63 kcal Atomic # 7 Polarization: -30.33 SS G_CDS: 0.88 Total: -29.45 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -1.00 Total: -17.06 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.90 Total: 15.20 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.68 -5.52 -35.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036681663.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.408 kcal (2) G-P(sol) polarization free energy of solvation -29.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds