Wall clock time and date at job start Tue Mar 31 2020 11:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29368 * 1 3 3 Si 1.86808 * 119.99979 * 2 1 4 4 H 1.48504 * 109.46653 * 269.99649 * 3 2 1 5 5 H 1.48499 * 109.47237 * 29.99105 * 3 2 1 6 6 H 1.48494 * 109.47216 * 149.99658 * 3 2 1 7 7 C 1.46627 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99908 * 0.02562 * 7 2 1 9 9 O 1.22323 * 119.99840 * 180.02562 * 7 2 1 10 10 C 1.35721 * 116.99788 * 185.04764 * 9 7 2 11 11 C 1.38988 * 120.03256 * 354.17592 * 10 9 7 12 12 C 1.38118 * 120.06989 * 179.69807 * 11 10 9 13 13 C 1.38204 * 120.14540 * 0.59778 * 12 11 10 14 14 C 1.38960 * 120.06662 * 359.68346 * 13 12 11 15 15 N 1.39830 * 120.03707 * 180.02562 * 14 13 12 16 16 C 1.34778 * 119.99706 * 215.16329 * 15 14 13 17 17 O 1.21701 * 120.00335 * 355.52892 * 16 15 14 18 18 C 1.46618 * 119.99723 * 175.52419 * 16 15 14 19 19 C 1.36562 * 125.98927 * 180.02562 * 18 16 15 20 20 C 1.40358 * 106.71053 * 180.02562 * 19 18 16 21 21 C 1.35139 * 107.11647 * 359.97438 * 20 19 18 22 22 N 1.48021 * 125.61783 * 180.02562 * 21 20 19 23 23 O 1.31705 * 119.99494 * 0.02562 * 22 21 20 24 24 O 1.31695 * 119.99862 * 179.97438 * 22 21 20 25 25 O 1.33941 * 108.76673 * 359.73603 * 21 20 19 26 26 C 1.38753 * 120.03398 * 174.45006 * 10 9 7 27 27 H 0.96998 * 119.99745 * 0.02562 * 1 2 3 28 28 H 1.07998 * 119.96482 * 0.02562 * 11 10 9 29 29 H 1.07999 * 119.92901 * 180.28085 * 12 11 10 30 30 H 1.07994 * 119.97155 * 179.69933 * 13 12 11 31 31 H 0.96998 * 120.00024 * 35.15484 * 15 14 13 32 32 H 1.07997 * 126.64536 * 0.02562 * 19 18 16 33 33 H 1.08003 * 126.44618 * 179.97438 * 20 19 18 34 34 H 1.07995 * 120.07474 * 0.03015 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2937 0.0000 0.0000 3 14 2.2277 1.6178 0.0000 4 1 2.4752 2.0464 -1.4001 5 1 1.4251 2.6528 0.6998 6 1 3.5252 1.4403 0.7001 7 6 2.0268 -1.2698 0.0006 8 1 1.4869 -2.2051 0.0006 9 8 3.2501 -1.2698 0.0010 10 6 3.8663 -2.4744 -0.1049 11 6 3.1155 -3.6439 -0.0856 12 6 3.7412 -4.8699 -0.1996 13 6 5.1162 -4.9388 -0.3207 14 6 5.8731 -3.7735 -0.3347 15 7 7.2642 -3.8439 -0.4578 16 6 8.0438 -2.9551 0.1894 17 8 7.5364 -2.0426 0.8147 18 6 9.5031 -3.0877 0.1402 19 6 10.4049 -2.2615 0.7478 20 6 11.6804 -2.7579 0.4367 21 6 11.5037 -3.8519 -0.3368 22 7 12.5836 -4.6953 -0.8967 23 8 13.8435 -4.4006 -0.6513 24 8 12.2844 -5.7409 -1.6394 25 8 10.1903 -4.0509 -0.5082 26 6 5.2469 -2.5399 -0.2267 27 1 -0.4850 0.8400 -0.0004 28 1 2.0412 -3.5937 0.0133 29 1 3.1552 -5.7770 -0.1889 30 1 5.6030 -5.8991 -0.4047 31 1 7.6681 -4.5324 -1.0089 32 1 10.1802 -1.3942 1.3508 33 1 12.6254 -2.3436 0.7556 34 1 5.8329 -1.6328 -0.2370 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036681663.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:17 Heat of formation + Delta-G solvation = 47.654782 kcal Electronic energy + Delta-G solvation = -24701.041034 eV Core-core repulsion = 20573.262586 eV Total energy + Delta-G solvation = -4127.778448 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.078 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.72813 -42.17664 -41.38044 -40.11715 -38.80661 -36.09604 -35.88909 -34.86969 -34.64707 -32.62546 -31.46037 -30.43772 -28.26399 -27.04773 -25.06908 -23.67029 -23.61236 -22.77373 -21.89302 -20.68305 -20.27188 -19.90320 -19.36592 -19.10732 -18.65250 -17.40703 -17.03298 -16.87920 -16.67564 -16.39981 -16.22849 -16.01912 -15.49683 -15.25292 -14.93608 -14.70599 -14.48359 -14.31687 -14.26762 -13.41544 -13.03790 -12.90009 -12.80189 -12.67076 -12.51576 -12.17794 -12.17205 -11.85830 -11.76426 -11.51506 -11.08662 -10.94018 -10.75907 -9.51895 -9.07750 -8.64238 -5.75893 -2.25256 -1.05659 -0.54271 0.36153 0.60907 0.67774 1.01527 1.29474 1.32944 1.47864 1.58692 1.69233 2.21834 2.61991 2.87322 2.95684 3.15549 3.24042 3.28066 3.70840 4.11564 4.14511 4.33687 4.37639 4.39666 4.45998 4.55339 4.69655 4.78414 4.84580 5.25049 5.31810 5.36379 5.38871 5.61114 5.72309 5.87444 6.04622 6.17488 6.59134 6.63775 8.00550 8.45663 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.022628 B = 0.002696 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.133191 B =10381.907672 C =11402.700672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.013 3.987 3 Si 0.968 3.032 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.265 1.265 7 C -0.435 4.435 8 H 0.072 0.928 9 O -0.176 6.176 10 C 0.111 3.889 11 C -0.259 4.259 12 C -0.045 4.045 13 C -0.210 4.210 14 C 0.176 3.824 15 N -0.637 5.637 16 C 0.595 3.405 17 O -0.505 6.505 18 C 0.019 3.981 19 C -0.112 4.112 20 C -0.033 4.033 21 C 0.058 3.942 22 N 0.018 4.982 23 O -0.117 6.117 24 O -0.201 6.201 25 O -0.150 6.150 26 C -0.202 4.202 27 H 0.297 0.703 28 H 0.111 0.889 29 H 0.151 0.849 30 H 0.157 0.843 31 H 0.432 0.568 32 H 0.216 0.784 33 H 0.232 0.768 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.824 -5.964 0.795 23.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.194 4.194 3 Si 0.789 3.211 4 H -0.186 1.186 5 H -0.183 1.183 6 H -0.189 1.189 7 C -0.514 4.514 8 H 0.090 0.910 9 O -0.077 6.077 10 C 0.059 3.941 11 C -0.279 4.279 12 C -0.063 4.063 13 C -0.231 4.231 14 C 0.082 3.918 15 N -0.283 5.283 16 C 0.380 3.620 17 O -0.380 6.380 18 C -0.037 4.037 19 C -0.132 4.132 20 C -0.055 4.055 21 C -0.080 4.080 22 N 0.491 4.509 23 O -0.315 6.315 24 O -0.383 6.383 25 O -0.046 6.046 26 C -0.224 4.224 27 H 0.108 0.892 28 H 0.128 0.872 29 H 0.168 0.832 30 H 0.175 0.825 31 H 0.272 0.728 32 H 0.233 0.767 33 H 0.248 0.752 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 21.699 -4.915 1.274 22.285 hybrid contribution -0.136 -0.161 -0.535 0.575 sum 21.563 -5.075 0.739 22.165 Atomic orbital electron populations 1.68615 1.08626 1.31093 1.42864 1.26925 0.95499 1.01095 0.95903 0.85283 0.79065 0.76989 0.79734 1.18629 1.18337 1.18914 1.20112 0.81170 0.95486 1.54595 0.91047 1.79922 1.21617 1.28920 1.77273 1.19401 0.92387 0.84624 0.97673 1.21133 1.00277 0.93061 1.13439 1.20896 0.94341 0.96397 0.94698 1.20761 0.93510 0.96823 1.12010 1.17125 0.81470 0.92980 1.00225 1.43127 1.04353 1.33065 1.47723 1.16671 0.82797 0.82649 0.79851 1.91043 1.71833 1.32401 1.42763 1.22530 0.92181 0.90276 0.98681 1.22638 0.88550 1.01702 1.00343 1.22456 1.02943 0.89181 0.90879 1.21533 0.79247 0.97848 1.09377 1.49331 1.01965 1.00682 0.98894 1.96334 0.94485 1.76689 1.63957 1.96396 1.90388 1.15423 1.36082 1.83960 1.15007 1.45909 1.59769 1.20032 0.91023 0.98117 1.13195 0.89153 0.87158 0.83166 0.82537 0.72839 0.76745 0.75172 0.86002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.74 13.88 23.22 0.32 -49.42 16 2 C 0.01 0.70 5.69 87.25 0.50 1.20 16 3 Si 0.97 43.56 28.83 68.60 1.98 45.54 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 5 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 6 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.44 -25.27 9.98 70.01 0.70 -24.57 16 8 H 0.07 4.33 5.14 -2.91 -0.01 4.32 16 9 O -0.18 -9.66 8.23 52.17 0.43 -9.23 16 10 C 0.11 5.30 6.58 22.57 0.15 5.45 16 11 C -0.26 -11.23 9.12 22.42 0.20 -11.03 16 12 C -0.04 -1.46 10.03 22.23 0.22 -1.24 16 13 C -0.21 -5.95 9.97 22.44 0.22 -5.72 16 14 C 0.18 5.56 6.29 38.17 0.24 5.80 16 15 N -0.64 -14.84 5.33 -307.17 -1.64 -16.48 16 16 C 0.59 14.17 7.62 86.43 0.66 14.83 16 17 O -0.50 -16.00 14.30 -4.35 -0.06 -16.07 16 18 C 0.02 0.31 7.13 24.07 0.17 0.48 16 19 C -0.11 -1.15 10.62 22.39 0.24 -0.91 16 20 C -0.03 -0.27 10.55 22.07 0.23 -0.03 16 21 C 0.06 0.89 8.31 81.21 0.68 1.57 16 22 N 0.02 0.37 4.98 -154.80 -0.77 -0.40 16 23 O -0.12 -2.21 19.74 3.51 0.07 -2.14 16 24 O -0.20 -5.04 19.97 5.37 0.11 -4.94 16 25 O -0.15 -2.55 10.41 -4.37 -0.05 -2.59 16 26 C -0.20 -8.30 8.64 22.52 0.19 -8.11 16 27 H 0.30 15.11 8.26 -92.71 -0.77 14.35 16 28 H 0.11 5.22 5.69 -2.91 -0.02 5.20 16 29 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 30 H 0.16 3.08 8.06 -2.91 -0.02 3.06 16 31 H 0.43 7.06 8.58 -92.71 -0.80 6.26 16 32 H 0.22 1.34 8.06 -2.91 -0.02 1.32 16 33 H 0.23 0.04 8.06 -2.91 -0.02 0.01 16 34 H 0.12 5.19 6.23 -2.91 -0.02 5.17 16 Total: -1.00 -71.78 323.66 5.21 -66.57 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 0.42 Total: 11.45 kcal Atomic # 6 Polarization: -26.70 SS G_CDS: 4.41 Total: -22.29 kcal Atomic # 7 Polarization: -64.21 SS G_CDS: -2.09 Total: -66.30 kcal Atomic # 8 Polarization: -35.47 SS G_CDS: 0.50 Total: -34.97 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.98 Total: 45.54 kcal Total: -71.78 5.21 -66.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036681663.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.224 kcal (2) G-P(sol) polarization free energy of solvation -71.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds