Wall clock time and date at job start Tue Mar 31 2020 12:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38885 * 120.33621 * 2 1 4 4 C 1.38293 * 118.51022 * 180.02562 * 3 2 1 5 5 C 1.39141 * 119.09258 * 0.02562 * 4 3 2 6 6 N 1.39000 * 119.70267 * 180.02562 * 5 4 3 7 7 S 1.65602 * 119.99879 * 179.97438 * 6 5 4 8 8 O 1.42098 * 106.40484 * 311.45889 * 7 6 5 9 9 O 1.42102 * 106.40166 * 178.53437 * 7 6 5 10 10 C 1.76199 * 107.21811 * 65.00077 * 7 6 5 11 11 C 1.38663 * 119.87784 * 269.98103 * 10 7 6 12 12 C 1.38602 * 120.50559 * 180.02562 * 11 10 7 13 13 C 1.37643 * 120.24907 * 359.97438 * 12 11 10 14 14 C 1.40698 * 119.74491 * 0.02562 * 13 12 11 15 15 C 1.41390 * 120.24679 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99807 * 335.57587 * 15 14 13 17 17 C 1.39945 * 119.99956 * 155.56926 * 15 14 13 18 18 N 1.30826 * 120.00259 * 341.94073 * 17 15 14 19 19 Si 1.86806 * 119.99911 * 161.93842 * 17 15 14 20 20 H 1.48503 * 109.47143 * 60.00157 * 19 17 15 21 21 H 1.48500 * 109.46912 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46912 * 300.00052 * 19 17 15 23 23 C 1.37600 * 119.87794 * 89.99764 * 10 7 6 24 24 N 1.32393 * 120.58837 * 0.27019 * 5 4 3 25 25 C 1.31969 * 121.62405 * 359.44365 * 24 5 4 26 26 H 1.09007 * 109.47337 * 89.99890 * 1 2 3 27 27 H 1.09000 * 109.47386 * 209.99678 * 1 2 3 28 28 H 1.08996 * 109.47471 * 329.99805 * 1 2 3 29 29 H 1.08001 * 120.74215 * 0.02562 * 3 2 1 30 30 H 1.07995 * 120.45301 * 180.02562 * 4 3 2 31 31 H 0.96998 * 120.00133 * 359.97438 * 6 5 4 32 32 H 1.07999 * 119.74063 * 359.97438 * 11 10 7 33 33 H 1.08006 * 119.88024 * 179.97438 * 12 11 10 34 34 H 1.07997 * 120.13129 * 180.02562 * 13 12 11 35 35 H 0.96997 * 120.00151 * 180.02562 * 18 17 15 36 36 H 1.08001 * 120.12598 * 0.25706 * 23 10 7 37 37 H 1.08004 * 119.57254 * 180.28783 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1987 0.0000 4 6 3.5907 1.1546 -0.0005 5 6 4.2281 -0.0822 -0.0016 6 7 5.6169 -0.1413 -0.0016 7 16 6.3831 -1.6093 -0.0023 8 8 5.7687 -2.3832 1.0190 9 8 7.7769 -1.3345 -0.0370 10 6 5.9939 -2.4002 -1.5279 11 6 4.8756 -3.2149 -1.6181 12 6 4.5575 -3.8438 -2.8116 13 6 5.3505 -3.6649 -3.9224 14 6 6.4878 -2.8404 -3.8427 15 6 7.3094 -2.6487 -4.9773 16 1 7.3288 -3.3911 -5.7615 17 6 8.0973 -1.4971 -5.0842 18 7 7.8294 -0.4504 -4.3466 19 14 9.5317 -1.4545 -6.2801 20 1 9.0319 -1.6766 -7.6608 21 1 10.2009 -0.1311 -6.2034 22 1 10.5022 -2.5217 -5.9273 23 6 6.8011 -2.2072 -2.6255 24 7 3.5237 -1.2032 -0.0075 25 6 2.2041 -1.1912 -0.0016 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 1.6861 2.1440 0.0004 30 1 4.1674 2.0677 -0.0001 31 1 6.1371 0.6774 -0.0013 32 1 4.2481 -3.3612 -0.7514 33 1 3.6843 -4.4766 -2.8703 34 1 5.1007 -4.1555 -4.8515 35 1 8.3753 0.3479 -4.4209 36 1 7.6742 -1.5757 -2.5520 37 1 1.6626 -2.1257 -0.0019 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619569708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:21 Heat of formation + Delta-G solvation = -21.387846 kcal Electronic energy + Delta-G solvation = -24234.388331 eV Core-core repulsion = 20682.201935 eV Total energy + Delta-G solvation = -3552.186396 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.26126 -37.55653 -36.56611 -35.53973 -35.20499 -33.75909 -32.75388 -31.15041 -30.18000 -29.52518 -26.44851 -25.39914 -23.79273 -22.02181 -21.71183 -21.08445 -19.13357 -18.14519 -17.88107 -17.05278 -16.02361 -15.66980 -15.20245 -15.08422 -14.80798 -14.67636 -14.39297 -14.13577 -13.39835 -13.27417 -13.12036 -13.01645 -12.62406 -12.53152 -12.02564 -11.80335 -11.56957 -11.48895 -11.35691 -11.33475 -11.16576 -11.07188 -11.02516 -10.72075 -10.58255 -9.84749 -9.72885 -9.35905 -9.32927 -9.24581 -8.11915 -8.04049 -7.54046 -6.88993 -4.46176 0.99971 1.28341 1.39776 2.25700 2.77177 3.03518 3.05353 3.15026 3.32329 3.87278 3.87379 4.27591 4.35525 4.60309 4.79148 4.91832 4.97391 5.03782 5.23995 5.36410 5.47251 5.53506 5.70517 5.83491 5.89100 6.11179 6.24073 6.28442 6.48149 6.57585 6.65336 6.90367 6.92977 7.04957 7.14592 7.28466 7.55817 7.74801 7.83637 8.06624 8.08046 8.38832 8.73538 8.77836 10.08857 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.015427 B = 0.004569 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.507973 B = 6127.371750 C = 6364.033147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.183 4.183 3 C -0.045 4.045 4 C -0.202 4.202 5 C 0.389 3.611 6 N -1.035 6.035 7 S 2.683 3.317 8 O -0.950 6.950 9 O -0.966 6.966 10 C -0.634 4.634 11 C -0.124 4.124 12 C -0.118 4.118 13 C -0.180 4.180 14 C 0.087 3.913 15 C -0.464 4.464 16 H 0.081 0.919 17 C 0.075 3.925 18 N -0.798 5.798 19 Si 0.912 3.088 20 H -0.265 1.265 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.061 4.061 24 N -0.505 5.505 25 C 0.151 3.849 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.134 0.866 30 H 0.136 0.864 31 H 0.430 0.570 32 H 0.120 0.880 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.285 0.715 36 H 0.135 0.865 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.112 5.632 6.418 13.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.187 4.187 3 C -0.072 4.072 4 C -0.227 4.227 5 C 0.156 3.844 6 N -0.779 5.779 7 S 2.781 3.219 8 O -0.940 6.940 9 O -0.956 6.956 10 C -0.728 4.728 11 C -0.145 4.145 12 C -0.137 4.137 13 C -0.200 4.200 14 C 0.084 3.916 15 C -0.493 4.493 16 H 0.099 0.901 17 C -0.143 4.143 18 N -0.424 5.424 19 Si 0.736 3.264 20 H -0.190 1.190 21 H -0.202 1.202 22 H -0.186 1.186 23 C -0.082 4.082 24 N -0.219 5.219 25 C -0.007 4.007 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.152 0.848 30 H 0.154 0.846 31 H 0.266 0.734 32 H 0.138 0.862 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.096 0.904 36 H 0.153 0.847 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -9.018 4.630 7.184 12.424 hybrid contribution 0.212 1.330 -1.421 1.958 sum -8.805 5.960 5.762 12.094 Atomic orbital electron populations 1.20599 0.90315 1.02635 1.02270 1.20716 0.97473 0.94053 1.06415 1.21222 0.93081 0.98117 0.94733 1.21498 0.95443 0.97149 1.08588 1.17906 0.83915 0.90342 0.92258 1.53727 1.11123 1.28139 1.84925 1.02017 0.72280 0.72231 0.75416 1.93526 1.77125 1.67505 1.55814 1.93570 1.29739 1.84176 1.88165 1.29619 1.08329 1.16392 1.18454 1.20230 0.96808 0.99527 0.97960 1.20659 0.98967 1.00322 0.93764 1.21254 0.96426 1.05100 0.97189 1.17633 0.90739 0.90759 0.92496 1.19525 1.20947 1.04326 1.04520 0.90105 1.25923 0.97604 0.94530 0.96223 1.69727 1.35025 1.02513 1.35114 0.86304 0.80996 0.78502 0.80612 1.18987 1.20171 1.18628 1.21233 0.97464 0.99162 0.90368 1.67196 1.09457 1.28306 1.16966 1.22314 0.87808 0.97746 0.92826 0.91302 0.91431 0.91799 0.84802 0.84642 0.73415 0.86165 0.88581 0.88425 0.90445 0.84747 0.82289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 10.03 36.00 0.36 -0.44 16 2 C -0.18 -2.11 5.90 -104.46 -0.62 -2.72 16 3 C -0.05 -0.51 9.85 -39.32 -0.39 -0.89 16 4 C -0.20 -2.63 9.94 -39.23 -0.39 -3.02 16 5 C 0.39 6.48 7.33 -155.03 -1.14 5.35 16 6 N -1.03 -17.68 5.85 31.13 0.18 -17.50 16 7 S 2.68 56.62 5.38 -107.50 -0.58 56.04 16 8 O -0.95 -21.23 16.14 -57.17 -0.92 -22.15 16 9 O -0.97 -22.22 17.26 -57.17 -0.99 -23.21 16 10 C -0.63 -15.10 5.76 -39.66 -0.23 -15.32 16 11 C -0.12 -2.82 8.40 -39.29 -0.33 -3.15 16 12 C -0.12 -2.62 10.02 -39.66 -0.40 -3.02 16 13 C -0.18 -4.33 9.80 -38.87 -0.38 -4.71 16 14 C 0.09 2.31 5.57 -106.82 -0.60 1.72 16 15 C -0.46 -12.15 9.05 -37.74 -0.34 -12.49 16 16 H 0.08 2.01 7.91 -52.49 -0.42 1.59 16 17 C 0.07 1.87 5.14 -17.34 -0.09 1.78 16 18 N -0.80 -20.36 10.97 55.55 0.61 -19.75 16 19 Si 0.91 18.59 29.60 -169.99 -5.03 13.56 16 20 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 21 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 22 H -0.26 -5.34 7.11 56.52 0.40 -4.93 16 23 C -0.06 -1.60 8.16 -38.87 -0.32 -1.92 16 24 N -0.50 -8.87 6.25 -12.44 -0.08 -8.95 16 25 C 0.15 2.11 10.85 -17.57 -0.19 1.92 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 28 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 29 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 30 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.43 5.86 8.82 -34.47 -0.30 5.56 16 32 H 0.12 2.56 6.53 -52.49 -0.34 2.22 16 33 H 0.10 1.82 8.06 -52.48 -0.42 1.39 16 34 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 35 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 36 H 0.13 3.66 5.72 -52.49 -0.30 3.36 16 37 H 0.16 1.82 8.06 -52.48 -0.42 1.40 16 LS Contribution 330.47 15.07 4.98 4.98 Total: -1.00 -32.79 330.47 -10.74 -43.53 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -3.87 Total: 10.39 kcal Atomic # 6 Polarization: -31.89 SS G_CDS: -5.04 Total: -36.93 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: 0.71 Total: -46.20 kcal Atomic # 8 Polarization: -43.46 SS G_CDS: -1.91 Total: -45.37 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Atomic # 16 Polarization: 56.62 SS G_CDS: -0.58 Total: 56.04 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.79 -10.74 -43.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619569708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.139 kcal (2) G-P(sol) polarization free energy of solvation -32.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds