Wall clock time and date at job start Tue Mar 31 2020 12:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38885 * 120.33621 * 2 1 4 4 C 1.38293 * 118.51022 * 180.02562 * 3 2 1 5 5 C 1.39141 * 119.09258 * 0.02562 * 4 3 2 6 6 N 1.39000 * 119.70267 * 180.02562 * 5 4 3 7 7 S 1.65602 * 119.99879 * 179.97438 * 6 5 4 8 8 O 1.42098 * 106.40484 * 311.45889 * 7 6 5 9 9 O 1.42102 * 106.40166 * 178.53437 * 7 6 5 10 10 C 1.76199 * 107.21811 * 65.00077 * 7 6 5 11 11 C 1.38663 * 119.87784 * 269.98103 * 10 7 6 12 12 C 1.38602 * 120.50559 * 180.02562 * 11 10 7 13 13 C 1.37643 * 120.24907 * 359.97438 * 12 11 10 14 14 C 1.40698 * 119.74491 * 0.02562 * 13 12 11 15 15 C 1.41390 * 120.24679 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99807 * 335.57587 * 15 14 13 17 17 C 1.39945 * 119.99956 * 155.56926 * 15 14 13 18 18 N 1.30826 * 120.00259 * 341.94073 * 17 15 14 19 19 Si 1.86806 * 119.99911 * 161.93842 * 17 15 14 20 20 H 1.48503 * 109.47143 * 60.00157 * 19 17 15 21 21 H 1.48500 * 109.46912 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46912 * 300.00052 * 19 17 15 23 23 C 1.37600 * 119.87794 * 89.99764 * 10 7 6 24 24 N 1.32393 * 120.58837 * 0.27019 * 5 4 3 25 25 C 1.31969 * 121.62405 * 359.44365 * 24 5 4 26 26 H 1.09007 * 109.47337 * 89.99890 * 1 2 3 27 27 H 1.09000 * 109.47386 * 209.99678 * 1 2 3 28 28 H 1.08996 * 109.47471 * 329.99805 * 1 2 3 29 29 H 1.08001 * 120.74215 * 0.02562 * 3 2 1 30 30 H 1.07995 * 120.45301 * 180.02562 * 4 3 2 31 31 H 0.96998 * 120.00133 * 359.97438 * 6 5 4 32 32 H 1.07999 * 119.74063 * 359.97438 * 11 10 7 33 33 H 1.08006 * 119.88024 * 179.97438 * 12 11 10 34 34 H 1.07997 * 120.13129 * 180.02562 * 13 12 11 35 35 H 0.96997 * 120.00151 * 180.02562 * 18 17 15 36 36 H 1.08001 * 120.12598 * 0.25706 * 23 10 7 37 37 H 1.08004 * 119.57254 * 180.28783 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1987 0.0000 4 6 3.5907 1.1546 -0.0005 5 6 4.2281 -0.0822 -0.0016 6 7 5.6169 -0.1413 -0.0016 7 16 6.3831 -1.6093 -0.0023 8 8 5.7687 -2.3832 1.0190 9 8 7.7769 -1.3345 -0.0370 10 6 5.9939 -2.4002 -1.5279 11 6 4.8756 -3.2149 -1.6181 12 6 4.5575 -3.8438 -2.8116 13 6 5.3505 -3.6649 -3.9224 14 6 6.4878 -2.8404 -3.8427 15 6 7.3094 -2.6487 -4.9773 16 1 7.3288 -3.3911 -5.7615 17 6 8.0973 -1.4971 -5.0842 18 7 7.8294 -0.4504 -4.3466 19 14 9.5317 -1.4545 -6.2801 20 1 9.0319 -1.6766 -7.6608 21 1 10.2009 -0.1311 -6.2034 22 1 10.5022 -2.5217 -5.9273 23 6 6.8011 -2.2072 -2.6255 24 7 3.5237 -1.2032 -0.0075 25 6 2.2041 -1.1912 -0.0016 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 1.6861 2.1440 0.0004 30 1 4.1674 2.0677 -0.0001 31 1 6.1371 0.6774 -0.0013 32 1 4.2481 -3.3612 -0.7514 33 1 3.6843 -4.4766 -2.8703 34 1 5.1007 -4.1555 -4.8515 35 1 8.3753 0.3479 -4.4209 36 1 7.6742 -1.5757 -2.5520 37 1 1.6626 -2.1257 -0.0019 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619569708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:20 Heat of formation + Delta-G solvation = -42.198376 kcal Electronic energy + Delta-G solvation = -24235.290743 eV Core-core repulsion = 20682.201935 eV Total energy + Delta-G solvation = -3553.088808 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.31568 -39.41373 -38.30381 -36.98027 -36.69458 -35.62502 -33.79981 -32.13580 -32.02192 -31.39053 -27.37424 -27.28543 -24.83593 -23.54007 -23.02035 -22.95233 -20.64237 -19.69678 -19.32647 -18.67240 -17.84068 -16.84831 -16.77594 -16.53013 -16.42030 -16.06278 -15.55301 -15.34220 -15.15707 -14.98822 -14.40249 -13.98213 -13.94637 -13.68357 -13.43691 -13.27358 -13.16225 -13.14450 -13.09344 -12.89251 -12.84092 -12.56771 -12.48173 -12.29606 -12.19534 -11.65194 -11.15176 -11.13508 -10.72387 -10.41115 -9.89897 -9.44726 -9.18404 -8.73659 -6.41875 -0.62641 0.24689 0.39947 0.41871 0.94587 1.35918 1.46885 1.50218 1.85617 2.17110 2.51205 2.66761 2.91485 3.24088 3.45515 3.56029 3.95558 4.04280 4.13747 4.19780 4.37129 4.51798 4.64458 4.73615 4.80914 4.96544 4.99384 5.00893 5.09759 5.20601 5.24510 5.28578 5.41872 5.43127 5.63347 5.69523 5.86347 5.93620 5.95575 6.20187 6.46689 6.82175 6.87004 7.00076 8.26523 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.015427 B = 0.004569 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.507973 B = 6127.371750 C = 6364.033147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.168 4.168 3 C -0.045 4.045 4 C -0.197 4.197 5 C 0.345 3.655 6 N -1.028 6.028 7 S 2.711 3.289 8 O -0.965 6.965 9 O -0.993 6.993 10 C -0.645 4.645 11 C -0.121 4.121 12 C -0.116 4.116 13 C -0.190 4.190 14 C 0.056 3.944 15 C -0.499 4.499 16 H 0.083 0.917 17 C 0.033 3.967 18 N -0.827 5.827 19 Si 0.982 3.018 20 H -0.255 1.255 21 H -0.266 1.266 22 H -0.263 1.263 23 C -0.092 4.092 24 N -0.544 5.544 25 C 0.123 3.877 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.174 0.826 30 H 0.161 0.839 31 H 0.442 0.558 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.112 0.888 35 H 0.291 0.709 36 H 0.115 0.885 37 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.168 6.773 6.362 15.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.172 4.172 3 C -0.071 4.071 4 C -0.222 4.222 5 C 0.113 3.887 6 N -0.778 5.778 7 S 2.806 3.194 8 O -0.954 6.954 9 O -0.983 6.983 10 C -0.736 4.736 11 C -0.142 4.142 12 C -0.135 4.135 13 C -0.209 4.209 14 C 0.053 3.947 15 C -0.529 4.529 16 H 0.101 0.899 17 C -0.182 4.182 18 N -0.453 5.453 19 Si 0.802 3.198 20 H -0.179 1.179 21 H -0.190 1.190 22 H -0.187 1.187 23 C -0.114 4.114 24 N -0.259 5.259 25 C -0.033 4.033 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.103 0.897 29 H 0.192 0.808 30 H 0.179 0.821 31 H 0.281 0.719 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.130 0.870 35 H 0.102 0.898 36 H 0.133 0.867 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -11.105 5.758 7.114 14.391 hybrid contribution 0.605 1.011 -1.293 1.749 sum -10.500 6.769 5.820 13.782 Atomic orbital electron populations 1.20694 0.87472 1.04261 1.03216 1.21159 0.99418 0.93277 1.03329 1.21746 0.92381 0.99749 0.93221 1.21840 0.96605 0.96633 1.07081 1.18245 0.83296 0.91773 0.95369 1.53215 1.11988 1.27084 1.85464 1.01070 0.71518 0.72617 0.74157 1.93493 1.77313 1.68911 1.55729 1.93524 1.31740 1.84840 1.88192 1.30018 1.08005 1.16482 1.19068 1.20527 0.96367 0.98647 0.98691 1.21068 0.99624 0.99976 0.92838 1.21529 0.96087 1.04780 0.98547 1.18030 0.91926 0.91811 0.92953 1.19811 1.22711 1.05344 1.05002 0.89880 1.26795 0.99690 0.93696 0.97982 1.69786 1.36047 1.03105 1.36369 0.85252 0.77273 0.78741 0.78522 1.17857 1.19037 1.18712 1.21081 0.98046 1.00779 0.91449 1.67037 1.11239 1.29514 1.18146 1.22768 0.87031 0.99736 0.93810 0.90479 0.90387 0.89718 0.80821 0.82128 0.71877 0.84778 0.84765 0.86961 0.89785 0.86731 0.80729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.19 10.03 71.23 0.71 -0.48 16 2 C -0.17 -3.38 5.90 -19.76 -0.12 -3.50 16 3 C -0.05 -0.85 9.85 22.44 0.22 -0.63 16 4 C -0.20 -4.74 9.94 22.50 0.22 -4.51 16 5 C 0.34 11.32 7.33 133.07 0.98 12.30 16 6 N -1.03 -35.60 5.85 -55.43 -0.32 -35.93 16 7 S 2.71 117.61 5.38 -56.49 -0.30 117.30 16 8 O -0.96 -43.83 16.14 -128.00 -2.07 -45.90 16 9 O -0.99 -47.47 17.26 -128.00 -2.21 -49.68 16 10 C -0.64 -31.53 5.76 22.22 0.13 -31.40 16 11 C -0.12 -5.53 8.40 22.46 0.19 -5.34 16 12 C -0.12 -5.09 10.02 22.22 0.22 -4.86 16 13 C -0.19 -9.22 9.80 22.73 0.22 -8.99 16 14 C 0.06 3.07 5.57 -21.29 -0.12 2.95 16 15 C -0.50 -27.00 9.05 23.46 0.21 -26.79 16 16 H 0.08 4.25 7.91 -2.91 -0.02 4.23 16 17 C 0.03 1.70 5.14 85.26 0.44 2.13 16 18 N -0.83 -43.48 10.97 21.83 0.24 -43.24 16 19 Si 0.98 38.48 29.60 68.60 2.03 40.51 16 20 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 21 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 22 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 23 C -0.09 -5.05 8.16 22.73 0.19 -4.87 16 24 N -0.54 -18.88 6.25 -193.27 -1.21 -20.09 16 25 C 0.12 3.27 10.85 84.62 0.92 4.19 16 26 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 27 H 0.08 0.81 8.09 -2.39 -0.02 0.79 16 28 H 0.08 0.71 8.09 -2.39 -0.02 0.69 16 29 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 30 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 31 H 0.44 12.27 8.82 -96.75 -0.85 11.42 16 32 H 0.13 5.68 6.53 -2.91 -0.02 5.66 16 33 H 0.13 4.76 8.06 -2.91 -0.02 4.73 16 34 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 35 H 0.29 13.84 8.30 -92.71 -0.77 13.07 16 36 H 0.11 6.61 5.72 -2.91 -0.02 6.59 16 37 H 0.18 3.75 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -73.65 330.47 0.84 -72.82 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: 0.26 Total: 34.01 kcal Atomic # 6 Polarization: -74.22 SS G_CDS: 4.41 Total: -69.80 kcal Atomic # 7 Polarization: -97.96 SS G_CDS: -1.29 Total: -99.25 kcal Atomic # 8 Polarization: -91.30 SS G_CDS: -4.28 Total: -95.58 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.03 Total: 40.51 kcal Atomic # 16 Polarization: 117.61 SS G_CDS: -0.30 Total: 117.30 kcal Total: -73.65 0.84 -72.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619569708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.617 kcal (2) G-P(sol) polarization free energy of solvation -73.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds