Wall clock time and date at job start Tue Mar 31 2020 11:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30857 * 1 3 3 Si 1.86799 * 120.00247 * 2 1 4 4 H 1.48498 * 109.47021 * 269.99819 * 3 2 1 5 5 H 1.48501 * 109.47078 * 29.99712 * 3 2 1 6 6 H 1.48495 * 109.47358 * 149.99943 * 3 2 1 7 7 C 1.39913 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00088 * 193.68312 * 7 2 1 9 9 C 1.41182 * 120.00094 * 13.68371 * 7 2 1 10 10 C 1.40852 * 120.16935 * 208.06979 * 9 7 2 11 11 C 1.36405 * 119.81902 * 179.97438 * 10 9 7 12 12 C 1.39407 * 120.17571 * 359.97438 * 11 10 9 13 13 N 1.39598 * 119.82520 * 180.02562 * 12 11 10 14 14 C 1.34839 * 124.17723 * 173.90683 * 13 12 11 15 15 O 1.21233 * 127.15234 * 0.63804 * 14 13 12 16 16 C 1.51502 * 105.69325 * 180.63270 * 14 13 12 17 17 H 1.09001 * 112.08965 * 118.07345 * 16 14 13 18 18 C 1.53241 * 109.56774 * 242.13279 * 16 14 13 19 19 S 1.81684 * 108.81009 * 167.57677 * 18 16 14 20 20 C 1.81633 * 102.65542 * 303.34895 * 19 18 16 21 21 C 1.53353 * 109.01693 * 56.35385 * 20 19 18 22 22 N 1.46330 * 108.93723 * 305.24913 * 21 20 19 23 23 C 1.33915 * 124.17841 * 353.88369 * 13 12 11 24 24 O 1.21531 * 123.84560 * 1.25586 * 23 13 12 25 25 C 1.39407 * 120.34572 * 0.27462 * 12 11 10 26 26 C 1.36401 * 120.17561 * 359.44679 * 25 12 11 27 27 H 0.96999 * 119.99964 * 359.97438 * 1 2 3 28 28 H 1.08007 * 120.09223 * 359.97438 * 10 9 7 29 29 H 1.08000 * 119.91315 * 180.02562 * 11 10 9 30 30 H 1.08997 * 109.57944 * 47.77629 * 18 16 14 31 31 H 1.08999 * 109.68634 * 287.43553 * 18 16 14 32 32 H 1.09000 * 109.54533 * 296.49445 * 20 19 18 33 33 H 1.09006 * 109.54618 * 176.21733 * 20 19 18 34 34 H 1.09002 * 109.56005 * 65.08376 * 21 20 19 35 35 H 1.09000 * 109.56466 * 185.41426 * 21 20 19 36 36 H 1.08002 * 119.90793 * 179.70446 * 25 12 11 37 37 H 1.08002 * 120.08884 * 180.28687 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4902 2.0463 -1.4001 5 1 1.4401 2.6527 0.7000 6 1 3.5401 1.4401 0.7000 7 6 2.0081 -1.2117 0.0005 8 1 3.0651 -1.2249 0.2218 9 6 1.3323 -2.4171 -0.2882 10 6 1.7933 -3.6339 0.2512 11 6 1.1346 -4.7942 -0.0320 12 6 0.0075 -4.7779 -0.8523 13 7 -0.6614 -5.9697 -1.1369 14 6 -1.8222 -6.0425 -1.8191 15 8 -2.4522 -5.1213 -2.2926 16 6 -2.1753 -7.5149 -1.8710 17 1 -3.1182 -7.7283 -1.3674 18 6 -2.2048 -7.9846 -3.3294 19 16 -2.2610 -9.8003 -3.3591 20 6 -0.7842 -10.2598 -2.4067 21 6 -0.8591 -9.6054 -1.0218 22 7 -1.0421 -8.1630 -1.1874 23 6 -0.2292 -7.1819 -0.7665 24 8 0.7835 -7.3717 -0.1221 25 6 -0.4519 -3.5784 -1.3941 26 6 0.1926 -2.4090 -1.1157 27 1 -0.4850 0.8400 0.0004 28 1 2.6661 -3.6481 0.8873 29 1 1.4865 -5.7280 0.3811 30 1 -1.3078 -7.6384 -3.8428 31 1 -3.0881 -7.5836 -3.8265 32 1 0.1081 -9.9115 -2.9269 33 1 -0.7440 -11.3435 -2.2963 34 1 -1.7019 -10.0189 -0.4679 35 1 0.0660 -9.7957 -0.4777 36 1 -1.3230 -3.5746 -2.0326 37 1 -0.1673 -1.4799 -1.5325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711331237.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:20 Heat of formation + Delta-G solvation = 2.422467 kcal Electronic energy + Delta-G solvation = -24169.325459 eV Core-core repulsion = 20618.171556 eV Total energy + Delta-G solvation = -3551.153903 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.54781 -38.58363 -37.93051 -36.51571 -35.37161 -33.61869 -32.35417 -30.57080 -29.63714 -29.04137 -25.97033 -24.74958 -24.01301 -22.30584 -21.68972 -20.22318 -20.12126 -17.61103 -17.33226 -17.25949 -16.91654 -16.08813 -15.64980 -15.41757 -15.23193 -14.96943 -14.76197 -14.18794 -13.99846 -13.91859 -13.47114 -13.21754 -13.00021 -12.77153 -12.28292 -12.17043 -12.05899 -11.92419 -11.67449 -11.29749 -11.19439 -10.83100 -10.51242 -10.48406 -10.12922 -9.95658 -9.54676 -9.40644 -9.18710 -8.98952 -8.11330 -7.64501 -7.17643 -6.82348 -4.42152 1.19350 1.64439 2.02738 2.17081 2.46782 3.00041 3.02117 3.04463 3.05149 3.07516 3.47189 3.87776 4.00110 4.14625 4.27496 4.54835 4.58005 4.60404 4.80048 5.02203 5.15787 5.28385 5.38709 5.58774 5.62005 6.00074 6.12565 6.31674 6.53875 6.73330 6.93679 7.02372 7.15416 7.45818 7.48608 7.56076 7.77392 7.95663 7.98467 8.19171 8.33002 8.52988 8.78856 8.86420 10.11290 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.032403 B = 0.003217 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.910294 B = 8702.346150 C = 9321.755771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.073 3.927 3 Si 0.913 3.087 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.454 4.454 8 H 0.081 0.919 9 C 0.111 3.889 10 C -0.214 4.214 11 C -0.093 4.093 12 C -0.032 4.032 13 N -0.483 5.483 14 C 0.515 3.485 15 O -0.457 6.457 16 C 0.095 3.905 17 H 0.139 0.861 18 C -0.086 4.086 19 S -0.233 6.233 20 C -0.110 4.110 21 C 0.151 3.849 22 N -0.634 5.634 23 C 0.701 3.299 24 O -0.529 6.529 25 C -0.105 4.105 26 C -0.152 4.152 27 H 0.283 0.717 28 H 0.100 0.900 29 H 0.130 0.870 30 H 0.095 0.905 31 H 0.130 0.870 32 H 0.092 0.908 33 H 0.124 0.876 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.121 0.879 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.966 -16.197 -4.571 17.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.146 4.146 3 Si 0.737 3.263 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.483 4.483 8 H 0.099 0.901 9 C 0.108 3.892 10 C -0.234 4.234 11 C -0.112 4.112 12 C -0.121 4.121 13 N -0.218 5.218 14 C 0.301 3.699 15 O -0.328 6.328 16 C -0.015 4.015 17 H 0.156 0.844 18 C -0.235 4.235 19 S -0.005 6.005 20 C -0.259 4.259 21 C 0.028 3.972 22 N -0.375 5.375 23 C 0.404 3.596 24 O -0.403 6.403 25 C -0.124 4.124 26 C -0.171 4.171 27 H 0.094 0.906 28 H 0.118 0.882 29 H 0.148 0.852 30 H 0.113 0.887 31 H 0.149 0.851 32 H 0.111 0.889 33 H 0.142 0.858 34 H 0.108 0.892 35 H 0.127 0.873 36 H 0.138 0.862 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.649 -16.405 -4.929 18.037 hybrid contribution 1.123 1.547 0.580 1.998 sum -4.526 -14.858 -4.349 16.129 Atomic orbital electron populations 1.69816 1.07560 1.29476 1.34626 1.25969 0.94846 1.01488 0.92265 0.86227 0.80388 0.80261 0.79375 1.19197 1.20214 1.18543 1.19636 0.96903 0.90741 1.41029 0.90117 1.17794 0.91154 0.92301 0.87938 1.20699 1.03656 0.92627 1.06429 1.20835 0.93992 0.99398 0.96973 1.17271 1.00535 0.81796 1.12489 1.43322 1.22408 1.07340 1.48767 1.20505 0.80684 0.90267 0.78474 1.90721 1.54362 1.42827 1.44853 1.22420 0.93603 0.90809 0.94631 0.84351 1.23644 1.08342 0.94929 0.96596 1.86891 1.36184 1.05243 1.72159 1.24011 0.98844 1.04952 0.98076 1.21493 1.04737 0.75453 0.95534 1.47707 1.23368 1.06005 1.60421 1.15766 0.83197 0.80360 0.80267 1.90837 1.24585 1.83069 1.41765 1.20747 1.00307 0.91065 1.00313 1.20953 0.98905 0.96214 1.01070 0.90635 0.88184 0.85208 0.88661 0.85145 0.88947 0.85836 0.89219 0.87289 0.86163 0.85796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.25 10.94 55.55 0.61 -19.64 16 2 C 0.07 1.80 5.20 -17.34 -0.09 1.71 16 3 Si 0.91 18.41 29.58 -169.99 -5.03 13.38 16 4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.45 -11.89 9.04 -37.84 -0.34 -12.23 16 8 H 0.08 2.02 7.88 -52.48 -0.41 1.61 16 9 C 0.11 2.96 5.55 -106.80 -0.59 2.37 16 10 C -0.21 -5.37 9.74 -39.25 -0.38 -5.75 16 11 C -0.09 -2.22 9.19 -39.81 -0.37 -2.59 16 12 C -0.03 -0.74 6.57 -83.45 -0.55 -1.29 16 13 N -0.48 -9.36 2.82 -64.27 -0.18 -9.54 16 14 C 0.52 8.61 7.42 -10.56 -0.08 8.53 16 15 O -0.46 -8.66 15.02 5.60 0.08 -8.58 16 16 C 0.10 1.11 3.84 -68.09 -0.26 0.85 16 17 H 0.14 1.30 8.14 -51.93 -0.42 0.87 16 18 C -0.09 -0.84 5.97 37.28 0.22 -0.62 16 19 S -0.23 -2.05 22.22 -107.50 -2.39 -4.44 16 20 C -0.11 -0.80 6.65 37.34 0.25 -0.55 16 21 C 0.15 1.29 6.75 -3.95 -0.03 1.26 16 22 N -0.63 -7.89 2.90 -172.26 -0.50 -8.39 16 23 C 0.70 12.19 8.24 -88.22 -0.73 11.47 16 24 O -0.53 -10.52 14.14 5.34 0.08 -10.45 16 25 C -0.10 -2.56 9.24 -39.81 -0.37 -2.93 16 26 C -0.15 -3.98 8.61 -39.26 -0.34 -4.32 16 27 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 28 H 0.10 2.35 8.06 -52.48 -0.42 1.92 16 29 H 0.13 3.03 5.13 -52.49 -0.27 2.76 16 30 H 0.09 1.03 8.09 -51.93 -0.42 0.61 16 31 H 0.13 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.12 0.60 8.14 -51.92 -0.42 0.18 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.11 0.94 7.74 -51.93 -0.40 0.54 16 36 H 0.12 2.85 5.32 -52.49 -0.28 2.57 16 37 H 0.12 3.34 6.26 -52.49 -0.33 3.01 16 LS Contribution 318.45 15.07 4.80 4.80 Total: -1.00 -30.25 318.45 -9.97 -40.22 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -3.78 Total: 6.73 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -3.65 Total: -4.10 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: -0.07 Total: -37.57 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: 0.16 Total: -19.02 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.38 kcal Atomic # 16 Polarization: -2.05 SS G_CDS: -2.39 Total: -4.44 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.25 -9.97 -40.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711331237.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.640 kcal (2) G-P(sol) polarization free energy of solvation -30.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds