Wall clock time and date at job start Tue Mar 31 2020 11:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47025 * 2 1 4 4 N 1.46908 * 109.46991 * 182.80456 * 3 2 1 5 5 C 1.46900 * 110.99518 * 66.26384 * 4 3 2 6 6 C 1.50702 * 109.47437 * 68.02669 * 5 4 3 7 7 H 1.08010 * 119.99565 * 5.05262 * 6 5 4 8 8 C 1.37874 * 120.00120 * 185.05923 * 6 5 4 9 9 N 1.31514 * 120.00103 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99816 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47151 * 59.99651 * 10 8 6 12 12 H 1.48496 * 109.46905 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.46980 * 299.99698 * 10 8 6 14 14 C 1.46897 * 111.00163 * 302.31177 * 4 3 2 15 15 C 1.50701 * 109.46952 * 284.44244 * 14 4 3 16 16 C 1.38598 * 120.79965 * 263.43325 * 15 14 4 17 17 C 1.38306 * 119.23812 * 179.77496 * 16 15 14 18 18 Cl 1.73607 * 119.56688 * 180.25346 * 17 16 15 19 19 N 1.31993 * 120.86690 * 0.51053 * 17 16 15 20 20 C 1.31919 * 121.74194 * 359.74137 * 19 17 16 21 21 Cl 1.73604 * 119.66119 * 180.02562 * 20 19 17 22 22 C 1.38844 * 120.67622 * 359.97438 * 20 19 17 23 23 O 1.35960 * 120.46682 * 180.02562 * 22 20 19 24 24 H 1.09000 * 109.47253 * 300.00048 * 1 2 3 25 25 H 1.09004 * 109.47610 * 60.00114 * 1 2 3 26 26 H 1.09004 * 109.47379 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47271 * 240.00492 * 2 1 3 28 28 H 1.09000 * 109.47482 * 120.00373 * 2 1 3 29 29 H 1.08998 * 109.46880 * 62.80709 * 3 2 1 30 30 H 1.08993 * 109.47204 * 302.80449 * 3 2 1 31 31 H 1.09001 * 109.46839 * 188.02011 * 5 4 3 32 32 H 1.08994 * 109.47389 * 308.01850 * 5 4 3 33 33 H 0.96998 * 120.00040 * 180.02562 * 9 8 6 34 34 H 1.08996 * 109.47420 * 44.43833 * 14 4 3 35 35 H 1.09000 * 109.47045 * 164.44441 * 14 4 3 36 36 H 1.08004 * 120.37844 * 0.02562 * 16 15 14 37 37 H 0.96702 * 113.99923 * 269.97701 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5074 1.4431 -0.0678 5 6 3.9751 0.9118 -1.3550 6 6 3.6071 1.8707 -2.4578 7 1 3.1520 2.8204 -2.2181 8 6 3.8512 1.5355 -3.7728 9 7 4.4057 0.3792 -4.0646 10 14 3.3945 2.7239 -5.1398 11 1 4.1299 4.0004 -4.9523 12 1 3.7579 2.1319 -6.4522 13 1 1.9330 2.9844 -5.1013 14 6 4.0865 0.6914 1.0536 15 6 3.9933 1.5154 2.3120 16 6 5.0689 2.2753 2.7439 17 6 4.9464 3.0231 3.9009 18 17 6.2861 3.9833 4.4462 19 7 3.8261 3.0124 4.5987 20 6 2.7819 2.2986 4.2240 21 17 1.3347 2.3249 5.1825 22 6 2.8281 1.5274 3.0704 23 8 1.7492 0.7938 2.6880 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.7182 1.9416 0.9141 30 1 1.6361 1.9706 -0.8637 31 1 5.0578 0.7898 -1.3259 32 1 3.5056 -0.0540 -1.5416 33 1 4.5778 0.1436 -4.9897 34 1 3.5377 -0.2406 1.1883 35 1 5.1324 0.4699 0.8410 36 1 5.9907 2.2866 2.1813 37 1 1.7367 -0.1040 3.0472 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237534721.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:07 Heat of formation + Delta-G solvation = -16.760010 kcal Electronic energy + Delta-G solvation = -22647.658370 eV Core-core repulsion = 19091.196097 eV Total energy + Delta-G solvation = -3556.462274 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 318.064 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.89646 -38.05641 -37.24306 -36.68541 -36.53467 -33.40177 -32.84283 -31.47679 -30.03628 -27.72147 -26.41996 -24.44690 -23.61303 -22.18011 -22.09853 -19.54954 -18.57252 -17.67181 -17.08845 -16.22642 -16.05142 -15.12740 -14.97196 -14.71015 -14.43504 -14.37335 -13.73224 -13.48283 -13.09162 -12.77614 -12.49438 -12.17831 -11.88696 -11.69235 -11.56079 -11.37731 -11.29220 -11.17303 -11.09973 -10.92762 -10.80698 -10.74022 -10.47202 -10.02166 -9.93581 -9.78176 -9.55760 -9.26289 -8.83885 -8.46727 -7.29759 -6.07015 -4.07926 0.52803 0.82689 1.33006 1.86435 3.16872 3.31522 3.35630 3.39096 3.75547 4.26864 4.40686 4.63963 4.79570 4.91365 5.06007 5.28753 5.30089 5.53238 5.56678 5.66674 5.82276 5.89574 5.97700 6.11594 6.20120 6.39672 6.43513 6.57141 6.71198 6.99786 7.17623 7.21100 7.34712 7.36052 7.74760 7.99902 8.10509 8.45944 8.99536 9.56454 11.03451 Molecular weight = 318.06amu Principal moments of inertia in cm(-1) A = 0.013611 B = 0.004206 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.598330 B = 6654.968858 C = 8047.029018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.151 4.151 3 C 0.066 3.934 4 N -0.528 5.528 5 C 0.191 3.809 6 C -0.505 4.505 7 H 0.062 0.938 8 C 0.058 3.942 9 N -0.899 5.899 10 Si 0.896 3.104 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.085 3.915 15 C -0.015 4.015 16 C -0.119 4.119 17 C 0.180 3.820 18 Cl -0.023 7.023 19 N -0.468 5.468 20 C 0.164 3.836 21 Cl -0.018 7.018 22 C 0.087 3.913 23 O -0.461 6.461 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.041 0.959 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.025 0.975 32 H 0.005 0.995 33 H 0.262 0.738 34 H 0.055 0.945 35 H 0.084 0.916 36 H 0.158 0.842 37 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.957 -0.915 16.958 17.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.190 4.190 3 C -0.062 4.062 4 N -0.251 5.251 5 C 0.066 3.934 6 C -0.544 4.544 7 H 0.080 0.920 8 C -0.144 4.144 9 N -0.539 5.539 10 Si 0.724 3.276 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.043 4.043 15 C -0.024 4.024 16 C -0.141 4.141 17 C 0.017 3.983 18 Cl 0.006 6.994 19 N -0.183 5.183 20 C -0.001 4.001 21 Cl 0.011 6.989 22 C 0.038 3.962 23 O -0.270 6.270 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.043 0.957 32 H 0.023 0.977 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.175 0.825 37 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -1.952 0.537 17.381 17.498 hybrid contribution -0.330 -0.925 -1.144 1.508 sum -2.282 -0.388 16.237 16.401 Atomic orbital electron populations 1.21608 0.96407 1.00340 1.01430 1.22066 0.95761 1.00004 1.01153 1.22136 0.87418 0.94950 1.01716 1.62371 1.07393 1.52671 1.02704 1.19822 0.95337 0.94721 0.83481 1.21070 1.40156 1.03081 0.90078 0.91989 1.24945 0.95367 0.95334 0.98730 1.69933 1.43492 1.21400 1.19034 0.86590 0.78941 0.81172 0.80910 1.20176 1.21376 1.20269 1.21056 1.01527 0.93604 0.88139 1.20840 0.90238 0.95348 0.96006 1.21840 1.01336 0.95779 0.95121 1.21331 0.88986 0.95661 0.92369 1.98414 1.40707 1.69994 1.90293 1.66156 0.98758 1.20254 1.33161 1.21891 0.89549 0.97365 0.91344 1.98412 1.31906 1.97188 1.71431 1.18808 0.88324 0.97121 0.91970 1.85093 1.40348 1.28761 1.72771 0.92896 0.93138 0.93987 0.91694 0.92743 0.91669 0.90436 0.95726 0.97726 0.92872 0.92704 0.89726 0.82481 0.75467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.91 37.15 0.37 -1.60 16 2 C -0.15 -2.42 4.55 -26.73 -0.12 -2.54 16 3 C 0.07 1.20 4.62 -3.82 -0.02 1.18 16 4 N -0.53 -10.30 4.61 -237.52 -1.09 -11.40 16 5 C 0.19 4.57 4.58 -4.97 -0.02 4.54 16 6 C -0.51 -13.55 8.35 -34.44 -0.29 -13.84 16 7 H 0.06 1.68 7.47 -52.48 -0.39 1.29 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -25.69 13.29 55.43 0.74 -24.95 16 10 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 14 C 0.08 1.29 4.88 -4.98 -0.02 1.27 16 15 C -0.01 -0.20 5.29 -104.19 -0.55 -0.75 16 16 C -0.12 -1.55 9.55 -39.42 -0.38 -1.92 16 17 C 0.18 2.40 7.27 -17.46 -0.13 2.27 16 18 Cl -0.02 -0.27 29.10 -51.86 -1.51 -1.78 16 19 N -0.47 -6.66 10.31 -7.39 -0.08 -6.73 16 20 C 0.16 2.17 7.29 -17.29 -0.13 2.05 16 21 Cl -0.02 -0.21 28.66 -51.86 -1.49 -1.70 16 22 C 0.09 1.11 5.84 -39.06 -0.23 0.88 16 23 O -0.46 -5.08 7.91 -19.62 -0.16 -5.24 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 1.24 6.29 -51.93 -0.33 0.92 16 28 H 0.05 0.75 4.60 -51.93 -0.24 0.51 16 29 H 0.07 1.14 5.40 -51.93 -0.28 0.86 16 30 H 0.08 1.63 6.96 -51.93 -0.36 1.27 16 31 H 0.02 0.63 7.78 -51.93 -0.40 0.22 16 32 H 0.00 0.13 6.11 -51.93 -0.32 -0.19 16 33 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 34 H 0.06 0.77 5.34 -51.93 -0.28 0.49 16 35 H 0.08 1.26 7.63 -51.93 -0.40 0.87 16 36 H 0.16 1.82 8.06 -52.48 -0.42 1.40 16 37 H 0.39 2.67 8.87 45.56 0.40 3.07 16 LS Contribution 329.57 15.07 4.97 4.97 Total: -1.00 -29.27 329.57 -8.67 -37.94 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -3.42 Total: -0.33 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -1.61 Total: -6.98 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: -0.43 Total: -43.08 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: -0.16 Total: -5.24 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -3.00 Total: -3.47 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.27 -8.67 -37.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237534721.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.178 kcal (2) G-P(sol) polarization free energy of solvation -29.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds