Wall clock time and date at job start Tue Mar 31 2020 11:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30117 * 125.46116 * 2 1 4 4 C 1.35194 * 108.65472 * 180.02562 * 3 2 1 5 5 C 1.48391 * 126.32422 * 180.02562 * 4 3 2 6 6 C 1.39383 * 120.05097 * 179.70158 * 5 4 3 7 7 C 1.37890 * 119.94971 * 179.73953 * 6 5 4 8 8 C 1.38957 * 120.04655 * 0.50981 * 7 6 5 9 9 N 1.39912 * 119.94997 * 179.74369 * 8 7 6 10 10 C 1.34772 * 120.00396 * 213.43848 * 9 8 7 11 11 O 1.21294 * 119.99901 * 5.26851 * 10 9 8 12 12 C 1.50691 * 120.00207 * 185.27280 * 10 9 8 13 13 S 1.81000 * 109.47166 * 179.97438 * 12 10 9 14 14 C 1.76205 * 100.00096 * 179.97438 * 13 12 10 15 15 H 1.07997 * 119.99836 * 0.02562 * 14 13 12 16 16 C 1.38799 * 120.00246 * 179.97438 * 14 13 12 17 17 N 1.31641 * 119.99589 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00354 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46868 * 60.00154 * 18 16 14 20 20 H 1.48500 * 109.47548 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47055 * 300.00627 * 18 16 14 22 22 C 1.38958 * 120.10455 * 359.76689 * 8 7 6 23 23 C 1.37888 * 120.04854 * 359.97139 * 22 8 7 24 24 C 1.35537 * 107.35187 * 0.02562 * 4 3 2 25 25 O 1.33975 * 125.46020 * 180.26473 * 2 1 3 26 26 H 1.09005 * 109.46990 * 89.99915 * 1 2 3 27 27 H 1.09000 * 109.46825 * 210.00255 * 1 2 3 28 28 H 1.08992 * 109.47035 * 330.00232 * 1 2 3 29 29 H 1.08000 * 120.02552 * 359.97438 * 6 5 4 30 30 H 1.07996 * 119.97945 * 180.24997 * 7 6 5 31 31 H 0.97000 * 119.99848 * 33.42768 * 9 8 7 32 32 H 1.09000 * 109.47194 * 299.99818 * 12 10 9 33 33 H 1.08999 * 109.47049 * 59.99973 * 12 10 9 34 34 H 0.96997 * 119.99708 * 180.02562 * 17 16 14 35 35 H 1.08000 * 119.97059 * 179.97438 * 22 8 7 36 36 H 1.08005 * 120.02020 * 180.02562 * 23 22 8 37 37 H 1.08003 * 126.52754 * 179.97438 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2619 1.0598 0.0000 4 6 3.5561 0.6689 -0.0006 5 6 4.7432 1.5593 -0.0002 6 6 6.0255 1.0129 0.0054 7 6 7.1272 1.8421 0.0002 8 6 6.9597 3.2215 0.0002 9 7 8.0789 4.0611 0.0004 10 6 8.0335 5.2446 0.6435 11 8 7.0584 5.5403 1.3014 12 6 9.1942 6.2006 0.5451 13 16 8.8333 7.6890 1.5097 14 6 10.3126 8.6035 1.2263 15 1 11.0936 8.1885 0.6065 16 6 10.4737 9.8576 1.7988 17 7 9.5216 10.3636 2.5540 18 14 12.0416 10.8273 1.4978 19 1 12.1988 11.0747 0.0420 20 1 11.9666 12.1251 2.2157 21 1 13.2062 10.0528 1.9968 22 6 5.6823 3.7686 0.0004 23 6 4.5777 2.9432 0.0001 24 6 3.5690 -0.6864 -0.0015 25 8 2.2842 -1.0912 -0.0050 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8899 0.5138 29 1 6.1561 -0.0592 0.0099 30 1 8.1209 1.4193 0.0005 31 1 8.8877 3.7912 -0.4622 32 1 10.0926 5.7228 0.9360 33 1 9.3525 6.4737 -0.4981 34 1 9.6340 11.2402 2.9538 35 1 5.5546 4.8410 0.0008 36 1 3.5851 3.3688 -0.0002 37 1 4.4429 -1.3209 -0.0025 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033165749.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:32 Heat of formation + Delta-G solvation = 11.401576 kcal Electronic energy + Delta-G solvation = -21938.908842 eV Core-core repulsion = 18388.144302 eV Total energy + Delta-G solvation = -3550.764540 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.53909 -40.32386 -38.39171 -35.43502 -34.43033 -32.65251 -32.46626 -31.08916 -30.44587 -28.78069 -27.21182 -25.52970 -23.81346 -23.03943 -21.49030 -21.31125 -20.16347 -18.13771 -17.86622 -17.32409 -17.01522 -16.50915 -16.11710 -15.40055 -14.83875 -14.64585 -14.46996 -14.38516 -14.00940 -13.80124 -13.52829 -13.42449 -13.36726 -13.15746 -12.85924 -12.64464 -12.24967 -12.03031 -11.64104 -11.29957 -11.08755 -11.06422 -10.81221 -10.78311 -10.32169 -9.88280 -9.57549 -9.22068 -9.09357 -8.97367 -8.31417 -7.83561 -6.55964 -6.25367 -3.97138 0.69679 1.35542 1.41266 2.43898 2.49545 2.87934 2.96390 3.21399 3.24600 3.27593 3.57064 3.61871 3.86741 4.16154 4.41444 4.55757 4.74389 4.85774 4.94873 4.97087 5.02423 5.09875 5.17697 5.29148 5.39294 5.46754 5.56108 5.62733 5.65300 5.77115 5.81389 5.97527 6.03597 6.25629 6.30807 6.46190 6.54035 6.98592 7.45925 7.46011 7.55704 8.31003 8.36381 9.19779 10.81972 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.040137 B = 0.002016 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.443207 B =13886.300741 C =14464.019365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.192 3.808 3 N -0.475 5.475 4 C 0.042 3.958 5 C -0.046 4.046 6 C -0.085 4.085 7 C -0.151 4.151 8 C 0.170 3.830 9 N -0.682 5.682 10 C 0.531 3.469 11 O -0.493 6.493 12 C -0.154 4.154 13 S -0.056 6.056 14 C -0.538 4.538 15 H 0.073 0.927 16 C 0.074 3.926 17 N -0.867 5.867 18 Si 0.920 3.080 19 H -0.274 1.274 20 H -0.282 1.282 21 H -0.274 1.274 22 C -0.123 4.123 23 C -0.064 4.064 24 C -0.074 4.074 25 O -0.203 6.203 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.102 0.898 29 H 0.124 0.876 30 H 0.129 0.871 31 H 0.410 0.590 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.270 0.730 35 H 0.142 0.858 36 H 0.133 0.867 37 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.225 -24.318 -8.048 27.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.016 4.016 3 N -0.205 5.205 4 C -0.077 4.077 5 C -0.047 4.047 6 C -0.105 4.105 7 C -0.172 4.172 8 C 0.074 3.926 9 N -0.328 5.328 10 C 0.318 3.682 11 O -0.365 6.365 12 C -0.305 4.305 13 S 0.170 5.830 14 C -0.686 4.686 15 H 0.091 0.909 16 C -0.136 4.136 17 N -0.502 5.502 18 Si 0.746 3.254 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.199 1.199 22 C -0.143 4.143 23 C -0.083 4.083 24 C -0.144 4.144 25 O -0.090 6.090 26 H 0.111 0.889 27 H 0.107 0.893 28 H 0.120 0.880 29 H 0.142 0.858 30 H 0.147 0.853 31 H 0.246 0.754 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.079 0.921 35 H 0.160 0.840 36 H 0.151 0.849 37 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -13.136 -23.003 -6.829 27.356 hybrid contribution 3.019 -0.555 -1.132 3.272 sum -10.117 -23.558 -7.961 26.846 Atomic orbital electron populations 1.20277 0.81223 1.05241 1.04751 1.26307 0.96595 0.78559 1.00105 1.70482 1.01397 1.30000 1.18585 1.20205 0.91195 0.91295 1.04964 1.17659 0.89291 0.92137 1.05631 1.20727 0.90722 0.99236 0.99775 1.20726 0.99213 0.91388 1.05845 1.17922 0.87434 0.89581 0.97669 1.43751 1.15118 1.19218 1.54707 1.20561 0.89088 0.80825 0.77703 1.90735 1.33700 1.74363 1.37664 1.23550 0.98486 1.01837 1.06612 1.85437 1.26246 1.08729 1.62553 1.22814 1.03718 1.05095 1.36963 0.90870 1.25001 0.97541 0.96571 0.94450 1.70007 1.32385 1.17669 1.30134 0.86205 0.81861 0.78768 0.78560 1.19906 1.20777 1.19919 1.21234 0.90489 1.01596 1.01013 1.21095 0.99153 0.91772 0.96297 1.24939 0.84751 0.95841 1.08872 1.84410 1.16880 1.37668 1.70038 0.88871 0.89320 0.87964 0.85781 0.85273 0.75393 0.88822 0.88693 0.92051 0.84025 0.84874 0.76651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.28 10.51 36.01 0.38 0.10 16 2 C 0.19 1.86 8.32 -13.00 -0.11 1.75 16 3 N -0.47 -5.93 10.99 -7.66 -0.08 -6.02 16 4 C 0.04 0.50 6.87 -83.17 -0.57 -0.07 16 5 C -0.05 -0.56 5.88 -104.87 -0.62 -1.18 16 6 C -0.09 -0.87 9.56 -39.28 -0.38 -1.24 16 7 C -0.15 -1.62 9.95 -39.44 -0.39 -2.02 16 8 C 0.17 2.31 6.28 -83.64 -0.53 1.79 16 9 N -0.68 -9.20 5.34 -9.83 -0.05 -9.25 16 10 C 0.53 9.61 7.58 -10.99 -0.08 9.53 16 11 O -0.49 -10.82 13.55 5.54 0.08 -10.75 16 12 C -0.15 -2.98 6.16 36.00 0.22 -2.76 16 13 S -0.06 -1.49 20.57 -107.50 -2.21 -3.70 16 14 C -0.54 -15.05 9.50 30.94 0.29 -14.76 16 15 H 0.07 1.92 7.80 -52.49 -0.41 1.52 16 16 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 17 N -0.87 -25.90 13.22 55.49 0.73 -25.17 16 18 Si 0.92 21.16 29.55 -169.99 -5.02 16.14 16 19 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 22 C -0.12 -1.86 8.64 -39.44 -0.34 -2.20 16 23 C -0.06 -0.89 9.69 -39.29 -0.38 -1.27 16 24 C -0.07 -0.68 11.57 29.77 0.34 -0.33 16 25 O -0.20 -1.97 10.76 5.48 0.06 -1.91 16 26 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.12 0.83 7.02 -52.49 -0.37 0.46 16 30 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 31 H 0.41 3.99 8.82 -40.82 -0.36 3.63 16 32 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 33 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 34 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.14 2.42 6.41 -52.49 -0.34 2.08 16 36 H 0.13 1.84 7.87 -52.48 -0.41 1.42 16 37 H 0.22 1.10 7.29 -52.48 -0.38 0.72 16 LS Contribution 343.57 15.07 5.18 5.18 Total: -1.00 -36.26 343.57 -7.52 -43.78 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -3.94 Total: 2.38 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -2.25 Total: -10.69 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 0.60 Total: -40.43 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.13 Total: -12.65 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.70 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.26 -7.52 -43.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033165749.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.177 kcal (2) G-P(sol) polarization free energy of solvation -36.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds