Wall clock time and date at job start Tue Mar 31 2020 11:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09002 * 109.46736 * 2 1 4 4 C 1.50704 * 109.46856 * 119.99448 * 2 1 3 5 5 H 1.08004 * 119.99612 * 120.00340 * 4 2 1 6 6 C 1.37868 * 120.00172 * 299.99958 * 4 2 1 7 7 N 1.31512 * 120.00429 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99942 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47008 * 60.00165 * 8 6 4 10 10 H 1.48501 * 109.47292 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47034 * 300.00111 * 8 6 4 12 12 S 1.81397 * 109.46956 * 239.99734 * 2 1 3 13 13 C 1.76201 * 103.00158 * 73.78219 * 12 2 1 14 14 C 1.38782 * 120.10166 * 358.87260 * 13 12 2 15 15 C 1.38205 * 119.98537 * 180.02562 * 14 13 12 16 16 C 1.38308 * 120.20770 * 0.02802 * 15 14 13 17 17 C 1.38237 * 120.21209 * 359.97438 * 16 15 14 18 18 C 1.38686 * 120.00644 * 359.68763 * 17 16 15 19 19 N 1.40040 * 120.10165 * 180.31847 * 18 17 16 20 20 C 1.34768 * 119.99948 * 33.96589 * 19 18 17 21 21 O 1.21520 * 120.00426 * 354.98351 * 20 19 18 22 22 C 1.48289 * 120.00115 * 174.98984 * 20 19 18 23 23 C 1.42285 * 126.94355 * 179.71106 * 22 20 19 24 24 C 1.35310 * 103.92097 * 179.85128 * 23 22 20 25 25 O 1.34019 * 106.67224 * 0.40433 * 24 23 22 26 26 N 1.20904 * 111.85253 * 359.72060 * 25 24 23 27 27 H 1.09005 * 109.46368 * 186.03018 * 1 2 3 28 28 H 1.08998 * 109.47067 * 306.02762 * 1 2 3 29 29 H 1.08990 * 109.46876 * 66.02850 * 1 2 3 30 30 H 0.96995 * 120.00634 * 180.02562 * 7 6 4 31 31 H 1.07999 * 120.01132 * 359.97438 * 14 13 12 32 32 H 1.08001 * 119.89168 * 179.97438 * 15 14 13 33 33 H 1.07996 * 119.89280 * 179.97438 * 16 15 14 34 34 H 1.07998 * 119.99985 * 180.02562 * 17 16 15 35 35 H 0.97000 * 119.99394 * 213.96131 * 19 18 17 36 36 H 1.08003 * 128.04196 * 359.97438 * 23 22 20 37 37 H 1.07998 * 126.66167 * 180.08746 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2392 2.4827 7 7 0.9428 0.8298 2.6034 8 14 2.3225 -1.1193 4.0080 9 1 3.8076 -1.1187 4.0078 10 1 1.8269 -0.4196 5.2205 11 1 1.8281 -2.5196 4.0083 12 16 2.1347 -0.8552 -1.4811 13 6 1.8148 0.3056 -2.7675 14 6 1.2060 1.5181 -2.4753 15 6 0.9557 2.4266 -3.4863 16 6 1.3095 2.1316 -4.7904 17 6 1.9162 0.9263 -5.0908 18 6 2.1779 0.0111 -4.0822 19 7 2.7985 -1.2076 -4.3833 20 6 3.7187 -1.2705 -5.3659 21 8 3.9441 -0.2924 -6.0510 22 6 4.4561 -2.5334 -5.6114 23 6 5.4474 -2.7655 -6.6054 24 6 5.8058 -4.0560 -6.4127 25 8 5.0640 -4.5130 -5.3944 26 7 4.3225 -3.6624 -4.9604 27 1 -0.3632 -1.0221 0.1080 28 1 -0.3633 0.6044 0.8311 29 1 -0.3633 0.4175 -0.9390 30 1 0.7088 1.1615 3.4843 31 1 0.9272 1.7514 -1.4584 32 1 0.4815 3.3696 -3.2573 33 1 1.1112 2.8451 -5.5764 34 1 2.1915 0.6997 -6.1102 35 1 2.5660 -2.0064 -3.8845 36 1 5.8272 -2.0721 -7.3413 37 1 6.5424 -4.6114 -6.9741 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066856425.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:12 Heat of formation + Delta-G solvation = 57.377914 kcal Electronic energy + Delta-G solvation = -23150.249383 eV Core-core repulsion = 19601.478527 eV Total energy + Delta-G solvation = -3548.770856 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.35853 -40.39449 -38.19738 -34.89613 -34.27954 -34.09517 -32.11619 -31.15233 -30.00630 -29.42968 -25.42524 -25.25728 -23.27812 -22.81869 -22.33325 -21.29073 -20.39218 -18.87397 -18.00893 -17.77112 -17.03214 -16.67570 -16.15029 -15.34774 -15.14925 -15.07455 -14.55265 -14.23460 -13.95672 -13.70678 -13.58497 -13.37327 -12.77677 -12.62922 -12.02055 -11.95139 -11.79181 -11.51352 -11.10571 -11.03294 -10.74457 -10.63499 -10.55042 -10.43033 -10.18550 -10.07226 -9.93489 -9.49053 -9.17202 -8.96787 -8.55529 -8.11338 -6.62327 -6.25314 -4.34064 0.82972 1.33348 1.61153 1.71338 2.36242 2.71518 2.91883 3.02777 3.22515 3.26377 3.30092 3.55595 3.72990 4.05198 4.27416 4.36716 4.73138 4.95523 5.07533 5.12162 5.24652 5.31012 5.53002 5.55205 5.74128 5.78593 6.14905 6.43056 6.48676 6.53203 6.65059 6.68729 6.72058 6.81794 7.21020 7.28522 7.29573 7.55926 7.72502 7.73901 7.92896 7.95384 8.64548 9.30361 10.81334 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.012867 B = 0.003916 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.562183 B = 7148.918499 C = 9061.040629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.098 3.902 3 H 0.053 0.947 4 C -0.513 4.513 5 H 0.067 0.933 6 C 0.072 3.928 7 N -0.886 5.886 8 Si 0.907 3.093 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.274 1.274 12 S -0.167 6.167 13 C -0.083 4.083 14 C -0.119 4.119 15 C -0.111 4.111 16 C -0.126 4.126 17 C -0.106 4.106 18 C 0.137 3.863 19 N -0.643 5.643 20 C 0.600 3.400 21 O -0.509 6.509 22 C -0.029 4.029 23 C -0.182 4.182 24 C -0.061 4.061 25 O 0.128 5.872 26 N -0.324 5.324 27 H 0.042 0.958 28 H 0.092 0.908 29 H 0.020 0.980 30 H 0.267 0.733 31 H 0.141 0.859 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.138 0.862 35 H 0.419 0.581 36 H 0.182 0.818 37 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.128 -5.000 -17.521 18.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.029 4.029 3 H 0.071 0.929 4 C -0.553 4.553 5 H 0.085 0.915 6 C -0.132 4.132 7 N -0.524 5.524 8 Si 0.734 3.266 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.199 1.199 12 S 0.081 5.919 13 C -0.199 4.199 14 C -0.144 4.144 15 C -0.131 4.131 16 C -0.148 4.148 17 C -0.128 4.128 18 C 0.037 3.963 19 N -0.288 5.288 20 C 0.385 3.615 21 O -0.383 6.383 22 C -0.189 4.189 23 C -0.205 4.205 24 C -0.142 4.142 25 O 0.050 5.950 26 N -0.023 5.023 27 H 0.061 0.939 28 H 0.110 0.890 29 H 0.039 0.961 30 H 0.077 0.923 31 H 0.159 0.841 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.156 0.844 35 H 0.257 0.743 36 H 0.200 0.800 37 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 4.943 -5.716 -16.759 18.384 hybrid contribution 0.129 0.873 0.518 1.023 sum 5.071 -4.843 -16.242 17.691 Atomic orbital electron populations 1.22127 0.96147 1.01587 1.00141 1.21130 0.95676 0.97382 0.88696 0.92924 1.20591 1.32771 1.13312 0.88588 0.91522 1.24875 0.94580 0.94920 0.98840 1.69855 1.35745 1.22453 1.24310 0.86406 0.79360 0.79689 0.81194 1.19918 1.20978 1.19907 1.85222 1.77591 1.26644 1.02412 1.21879 1.03304 0.99282 0.95393 1.21362 0.99644 0.92571 1.00790 1.21080 1.00110 0.99161 0.92773 1.20927 1.00527 0.96787 0.96569 1.21112 0.98859 0.94046 0.98771 1.17140 0.99992 0.87338 0.91786 1.43224 1.38750 1.11295 1.35556 1.16869 0.78719 0.85320 0.80592 1.90780 1.65433 1.35135 1.46958 1.23467 1.02245 0.94642 0.98505 1.22764 0.98855 0.97132 1.01717 1.26076 0.99701 0.95517 0.92863 1.84829 1.37809 1.34362 1.37987 1.74280 1.10664 0.98784 1.18529 0.93887 0.88989 0.96093 0.92327 0.84136 0.85983 0.86002 0.84410 0.74277 0.80034 0.75810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.34 37.16 0.31 -2.94 16 2 C 0.10 2.40 1.97 -27.88 -0.05 2.35 16 3 H 0.05 1.37 6.94 -51.92 -0.36 1.01 16 4 C -0.51 -13.72 8.58 -34.44 -0.30 -14.01 16 5 H 0.07 1.80 7.71 -52.48 -0.40 1.39 16 6 C 0.07 1.91 5.30 -17.82 -0.09 1.82 16 7 N -0.89 -23.97 11.39 55.43 0.63 -23.34 16 8 Si 0.91 20.65 29.54 -169.99 -5.02 15.63 16 9 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 11 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 12 S -0.17 -3.61 20.07 -107.50 -2.16 -5.77 16 13 C -0.08 -1.63 6.10 -38.90 -0.24 -1.86 16 14 C -0.12 -2.21 8.17 -39.39 -0.32 -2.53 16 15 C -0.11 -1.73 10.04 -39.57 -0.40 -2.13 16 16 C -0.13 -1.86 10.04 -39.56 -0.40 -2.26 16 17 C -0.11 -1.75 8.71 -39.42 -0.34 -2.09 16 18 C 0.14 2.47 6.33 -83.46 -0.53 1.94 16 19 N -0.64 -10.67 5.03 -10.44 -0.05 -10.72 16 20 C 0.60 9.44 7.70 -12.13 -0.09 9.34 16 21 O -0.51 -8.74 14.31 5.35 0.08 -8.66 16 22 C -0.03 -0.39 7.19 -82.53 -0.59 -0.98 16 23 C -0.18 -1.68 10.99 -39.07 -0.43 -2.11 16 24 C -0.06 -0.40 12.28 29.69 0.36 -0.03 16 25 O 0.13 1.27 11.18 17.24 0.19 1.46 16 26 N -0.32 -4.20 11.85 33.29 0.39 -3.80 16 27 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.09 2.29 6.25 -51.93 -0.32 1.96 16 29 H 0.02 0.43 6.15 -51.93 -0.32 0.11 16 30 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.14 2.77 4.74 -52.49 -0.25 2.52 16 32 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 33 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 34 H 0.14 2.19 6.12 -52.49 -0.32 1.87 16 35 H 0.42 6.80 7.70 -40.82 -0.31 6.48 16 36 H 0.18 1.33 8.06 -52.48 -0.42 0.91 16 37 H 0.23 0.28 8.06 -52.49 -0.42 -0.14 16 LS Contribution 330.70 15.07 4.98 4.98 Total: -1.00 -30.29 330.70 -7.61 -37.89 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -3.54 Total: 7.81 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: -3.11 Total: -15.49 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.97 Total: -37.86 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: 0.27 Total: -7.20 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -2.16 Total: -5.77 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.29 -7.61 -37.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066856425.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.271 kcal (2) G-P(sol) polarization free energy of solvation -30.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds