Wall clock time and date at job start Tue Mar 31 2020 11:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09002 * 109.46736 * 2 1 4 4 C 1.50704 * 109.46856 * 119.99448 * 2 1 3 5 5 H 1.08004 * 119.99612 * 120.00340 * 4 2 1 6 6 C 1.37868 * 120.00172 * 299.99958 * 4 2 1 7 7 N 1.31512 * 120.00429 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99942 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47008 * 60.00165 * 8 6 4 10 10 H 1.48501 * 109.47292 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47034 * 300.00111 * 8 6 4 12 12 S 1.81397 * 109.46956 * 239.99734 * 2 1 3 13 13 C 1.76201 * 103.00158 * 73.78219 * 12 2 1 14 14 C 1.38782 * 120.10166 * 358.87260 * 13 12 2 15 15 C 1.38205 * 119.98537 * 180.02562 * 14 13 12 16 16 C 1.38308 * 120.20770 * 0.02802 * 15 14 13 17 17 C 1.38237 * 120.21209 * 359.97438 * 16 15 14 18 18 C 1.38686 * 120.00644 * 359.68763 * 17 16 15 19 19 N 1.40040 * 120.10165 * 180.31847 * 18 17 16 20 20 C 1.34768 * 119.99948 * 33.96589 * 19 18 17 21 21 O 1.21520 * 120.00426 * 354.98351 * 20 19 18 22 22 C 1.48289 * 120.00115 * 174.98984 * 20 19 18 23 23 C 1.42285 * 126.94355 * 179.71106 * 22 20 19 24 24 C 1.35310 * 103.92097 * 179.85128 * 23 22 20 25 25 O 1.34019 * 106.67224 * 0.40433 * 24 23 22 26 26 N 1.20904 * 111.85253 * 359.72060 * 25 24 23 27 27 H 1.09005 * 109.46368 * 186.03018 * 1 2 3 28 28 H 1.08998 * 109.47067 * 306.02762 * 1 2 3 29 29 H 1.08990 * 109.46876 * 66.02850 * 1 2 3 30 30 H 0.96995 * 120.00634 * 180.02562 * 7 6 4 31 31 H 1.07999 * 120.01132 * 359.97438 * 14 13 12 32 32 H 1.08001 * 119.89168 * 179.97438 * 15 14 13 33 33 H 1.07996 * 119.89280 * 179.97438 * 16 15 14 34 34 H 1.07998 * 119.99985 * 180.02562 * 17 16 15 35 35 H 0.97000 * 119.99394 * 213.96131 * 19 18 17 36 36 H 1.08003 * 128.04196 * 359.97438 * 23 22 20 37 37 H 1.07998 * 126.66167 * 180.08746 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2392 2.4827 7 7 0.9428 0.8298 2.6034 8 14 2.3225 -1.1193 4.0080 9 1 3.8076 -1.1187 4.0078 10 1 1.8269 -0.4196 5.2205 11 1 1.8281 -2.5196 4.0083 12 16 2.1347 -0.8552 -1.4811 13 6 1.8148 0.3056 -2.7675 14 6 1.2060 1.5181 -2.4753 15 6 0.9557 2.4266 -3.4863 16 6 1.3095 2.1316 -4.7904 17 6 1.9162 0.9263 -5.0908 18 6 2.1779 0.0111 -4.0822 19 7 2.7985 -1.2076 -4.3833 20 6 3.7187 -1.2705 -5.3659 21 8 3.9441 -0.2924 -6.0510 22 6 4.4561 -2.5334 -5.6114 23 6 5.4474 -2.7655 -6.6054 24 6 5.8058 -4.0560 -6.4127 25 8 5.0640 -4.5130 -5.3944 26 7 4.3225 -3.6624 -4.9604 27 1 -0.3632 -1.0221 0.1080 28 1 -0.3633 0.6044 0.8311 29 1 -0.3633 0.4175 -0.9390 30 1 0.7088 1.1615 3.4843 31 1 0.9272 1.7514 -1.4584 32 1 0.4815 3.3696 -3.2573 33 1 1.1112 2.8451 -5.5764 34 1 2.1915 0.6997 -6.1102 35 1 2.5660 -2.0064 -3.8845 36 1 5.8272 -2.0721 -7.3413 37 1 6.5424 -4.6114 -6.9741 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066856425.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:11 Heat of formation + Delta-G solvation = 39.660391 kcal Electronic energy + Delta-G solvation = -23151.017672 eV Core-core repulsion = 19601.478527 eV Total energy + Delta-G solvation = -3549.539145 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -46.19261 -41.66244 -39.50189 -36.37457 -35.92491 -35.07229 -32.92413 -32.83968 -31.64788 -30.71473 -27.42085 -26.35272 -24.16712 -24.04609 -23.75856 -23.00622 -21.51044 -19.92807 -19.12182 -18.86488 -18.20984 -18.10606 -17.83206 -17.00835 -16.54523 -16.24691 -16.00109 -15.51008 -15.19762 -15.14813 -14.81626 -14.40173 -14.25009 -14.19243 -13.74452 -13.33449 -13.07486 -12.88816 -12.84368 -12.76125 -12.48314 -12.27353 -11.94345 -11.65528 -11.60438 -11.39293 -11.28920 -10.88506 -10.75925 -10.61421 -10.52975 -9.45867 -8.27492 -8.26072 -6.43865 -0.19120 0.24994 0.36573 0.75549 0.78471 1.40367 1.41328 1.49833 1.60598 1.81197 1.89401 2.29665 2.36008 2.69917 2.78176 3.02567 3.56100 3.84004 3.94241 4.11436 4.21301 4.32073 4.42161 4.42861 4.56762 4.64597 4.76630 4.81443 4.82282 4.97835 5.10911 5.18910 5.30150 5.36275 5.50025 5.55593 5.70598 5.93038 5.96958 6.03660 6.57658 6.63611 7.03290 7.23666 8.78434 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.012867 B = 0.003916 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.562183 B = 7148.918499 C = 9061.040629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.100 3.900 3 H 0.027 0.973 4 C -0.537 4.537 5 H 0.057 0.943 6 C 0.030 3.970 7 N -0.908 5.908 8 Si 0.967 3.033 9 H -0.272 1.272 10 H -0.276 1.276 11 H -0.269 1.269 12 S -0.179 6.179 13 C -0.107 4.107 14 C -0.133 4.133 15 C -0.107 4.107 16 C -0.107 4.107 17 C -0.113 4.113 18 C 0.132 3.868 19 N -0.649 5.649 20 C 0.599 3.401 21 O -0.528 6.528 22 C -0.062 4.062 23 C -0.195 4.195 24 C -0.025 4.025 25 O 0.135 5.865 26 N -0.355 5.355 27 H 0.035 0.965 28 H 0.072 0.928 29 H 0.038 0.962 30 H 0.270 0.730 31 H 0.123 0.877 32 H 0.154 0.846 33 H 0.164 0.836 34 H 0.145 0.855 35 H 0.418 0.582 36 H 0.199 0.801 37 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.113 -5.386 -19.482 21.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.028 4.028 3 H 0.045 0.955 4 C -0.576 4.576 5 H 0.075 0.925 6 C -0.172 4.172 7 N -0.545 5.545 8 Si 0.791 3.209 9 H -0.197 1.197 10 H -0.200 1.200 11 H -0.194 1.194 12 S 0.068 5.932 13 C -0.223 4.223 14 C -0.158 4.158 15 C -0.127 4.127 16 C -0.128 4.128 17 C -0.134 4.134 18 C 0.032 3.968 19 N -0.293 5.293 20 C 0.386 3.614 21 O -0.404 6.404 22 C -0.219 4.219 23 C -0.218 4.218 24 C -0.105 4.105 25 O 0.054 5.946 26 N -0.053 5.053 27 H 0.054 0.946 28 H 0.091 0.909 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.140 0.860 32 H 0.172 0.828 33 H 0.181 0.819 34 H 0.163 0.837 35 H 0.255 0.745 36 H 0.216 0.784 37 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges 5.910 -6.079 -18.735 20.564 hybrid contribution -0.111 0.999 0.929 1.368 sum 5.799 -5.081 -17.806 19.403 Atomic orbital electron populations 1.21920 0.95441 1.00702 1.00245 1.20868 0.96167 0.96049 0.89744 0.95482 1.20851 1.33235 1.13445 0.90100 0.92511 1.25641 0.94597 0.95535 1.01434 1.69955 1.36227 1.23300 1.25025 0.85475 0.78767 0.78759 0.77919 1.19715 1.20039 1.19434 1.84999 1.78552 1.27468 1.02168 1.21833 1.05831 0.99503 0.95097 1.21367 1.00370 0.93110 1.00906 1.21411 0.99409 0.99579 0.92314 1.21397 0.97799 0.96429 0.97173 1.21349 0.98987 0.94452 0.98629 1.17359 0.99781 0.88195 0.91497 1.43317 1.39203 1.10847 1.35967 1.17247 0.78200 0.86237 0.79733 1.90739 1.65979 1.36132 1.47523 1.23406 1.03929 0.93888 1.00672 1.23081 0.98391 0.98767 1.01569 1.27082 0.98213 0.94609 0.90562 1.84786 1.37472 1.33674 1.38628 1.74300 1.12125 0.99190 1.19661 0.94606 0.90898 0.94293 0.92095 0.85965 0.82815 0.81875 0.83738 0.74477 0.78428 0.70136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.93 8.34 71.99 0.60 -5.33 16 2 C 0.10 5.08 1.97 29.85 0.06 5.14 16 3 H 0.03 1.50 6.94 -2.39 -0.02 1.48 16 4 C -0.54 -29.72 8.58 25.60 0.22 -29.50 16 5 H 0.06 3.17 7.71 -2.91 -0.02 3.15 16 6 C 0.03 1.63 5.30 84.65 0.45 2.08 16 7 N -0.91 -50.16 11.39 21.44 0.24 -49.91 16 8 Si 0.97 42.78 29.54 68.60 2.03 44.80 16 9 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 10 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 11 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 12 S -0.18 -8.06 20.07 -56.49 -1.13 -9.19 16 13 C -0.11 -4.31 6.10 22.71 0.14 -4.17 16 14 C -0.13 -4.99 8.17 22.39 0.18 -4.81 16 15 C -0.11 -3.13 10.04 22.28 0.22 -2.91 16 16 C -0.11 -2.86 10.04 22.29 0.22 -2.63 16 17 C -0.11 -3.56 8.71 22.38 0.19 -3.36 16 18 C 0.13 4.77 6.33 38.25 0.24 5.01 16 19 N -0.65 -22.10 5.03 -305.22 -1.54 -23.64 16 20 C 0.60 19.07 7.70 86.92 0.67 19.74 16 21 O -0.53 -18.06 14.31 -3.78 -0.05 -18.11 16 22 C -0.06 -1.61 7.19 42.95 0.31 -1.30 16 23 C -0.20 -3.19 10.99 22.60 0.25 -2.94 16 24 C -0.02 -0.23 12.28 67.14 0.82 0.59 16 25 O 0.13 2.41 11.18 71.86 0.80 3.21 16 26 N -0.36 -9.11 11.85 -49.51 -0.59 -9.70 16 27 H 0.03 1.71 8.14 -2.38 -0.02 1.69 16 28 H 0.07 3.76 6.25 -2.39 -0.01 3.75 16 29 H 0.04 1.67 6.15 -2.39 -0.01 1.66 16 30 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 31 H 0.12 5.01 4.74 -2.91 -0.01 4.99 16 32 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 33 H 0.16 3.05 8.06 -2.91 -0.02 3.02 16 34 H 0.15 4.39 6.12 -2.91 -0.02 4.38 16 35 H 0.42 14.21 7.70 -92.71 -0.71 13.49 16 36 H 0.20 2.44 8.06 -2.91 -0.02 2.42 16 37 H 0.28 -0.98 8.06 -2.91 -0.02 -1.00 16 Total: -1.00 -69.02 330.70 4.77 -64.25 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: 0.42 Total: 22.70 kcal Atomic # 6 Polarization: -28.98 SS G_CDS: 4.58 Total: -24.40 kcal Atomic # 7 Polarization: -81.37 SS G_CDS: -1.88 Total: -83.25 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: 0.75 Total: -14.91 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Atomic # 16 Polarization: -8.06 SS G_CDS: -1.13 Total: -9.19 kcal Total: -69.02 4.77 -64.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066856425.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.913 kcal (2) G-P(sol) polarization free energy of solvation -69.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds