Wall clock time and date at job start Tue Mar 31 2020 11:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47189 * 2 1 4 4 C 1.50697 * 109.47168 * 239.99809 * 2 1 3 5 5 H 1.08005 * 120.00160 * 239.99396 * 4 2 1 6 6 C 1.37876 * 119.99979 * 60.00241 * 4 2 1 7 7 N 1.31509 * 120.00117 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99941 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46925 * 59.99664 * 8 6 4 10 10 H 1.48497 * 109.47103 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46903 * 299.99689 * 8 6 4 12 12 S 1.81401 * 109.47275 * 119.99529 * 2 1 3 13 13 C 1.76202 * 103.00127 * 190.49742 * 12 2 1 14 14 C 1.38780 * 120.10694 * 358.48982 * 13 12 2 15 15 C 1.38194 * 119.99447 * 180.02562 * 14 13 12 16 16 C 1.38307 * 120.20169 * 0.02636 * 15 14 13 17 17 C 1.38236 * 120.21726 * 359.94912 * 16 15 14 18 18 C 1.38676 * 120.00421 * 0.30489 * 17 16 15 19 19 N 1.40032 * 120.10503 * 179.72027 * 18 17 16 20 20 C 1.34777 * 120.00002 * 33.23848 * 19 18 17 21 21 O 1.21514 * 119.99903 * 5.12910 * 20 19 18 22 22 C 1.48293 * 120.00033 * 185.12608 * 20 19 18 23 23 C 1.42294 * 126.93859 * 179.71101 * 22 20 19 24 24 C 1.35311 * 103.91805 * 179.85671 * 23 22 20 25 25 O 1.34014 * 106.67515 * 0.40434 * 24 23 22 26 26 N 1.20910 * 111.85142 * 359.72558 * 25 24 23 27 27 H 1.09000 * 109.47271 * 304.80470 * 1 2 3 28 28 H 1.09000 * 109.47101 * 64.80453 * 1 2 3 29 29 H 1.08997 * 109.47001 * 184.80748 * 1 2 3 30 30 H 0.97003 * 119.99789 * 180.02562 * 7 6 4 31 31 H 1.08000 * 120.00583 * 0.02562 * 14 13 12 32 32 H 1.08000 * 119.90026 * 180.02562 * 15 14 13 33 33 H 1.08001 * 119.89304 * 179.97438 * 16 15 14 34 34 H 1.08001 * 119.99923 * 180.02562 * 17 16 15 35 35 H 0.97002 * 120.00408 * 213.24132 * 19 18 17 36 36 H 1.07994 * 128.03781 * 359.97041 * 23 22 20 37 37 H 1.07995 * 126.65616 * 180.13215 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 1.8281 -2.5199 -4.0080 10 1 1.8270 -0.4201 -5.2204 11 1 3.8076 -1.1190 -4.0076 12 16 2.1347 -0.8550 1.4812 13 6 3.8584 -0.4896 1.4739 14 6 4.4053 0.2668 0.4469 15 6 5.7576 0.5515 0.4431 16 6 6.5697 0.0844 1.4605 17 6 6.0339 -0.6694 2.4879 18 6 4.6790 -0.9648 2.4976 19 7 4.1350 -1.7331 3.5343 20 6 4.6421 -1.6401 4.7796 21 8 5.5079 -0.8232 5.0236 22 6 4.1434 -2.5348 5.8520 23 6 4.5748 -2.5678 7.2075 24 6 3.8192 -3.5415 7.7659 25 8 3.0322 -4.0226 6.7937 26 7 3.2209 -3.4582 5.7413 27 1 -0.3634 0.5866 0.8438 28 1 -0.3633 0.4375 -0.9299 29 1 -0.3633 -1.0240 0.0861 30 1 0.7082 1.1607 -3.4845 31 1 3.7742 0.6329 -0.3494 32 1 6.1815 1.1407 -0.3566 33 1 7.6260 0.3095 1.4524 34 1 6.6713 -1.0321 3.2808 35 1 3.3933 -2.3323 3.3562 36 1 5.3286 -1.9563 7.6810 37 1 3.8482 -3.8703 8.7942 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066856426.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:14 Heat of formation + Delta-G solvation = 55.685243 kcal Electronic energy + Delta-G solvation = -23283.661165 eV Core-core repulsion = 19734.816910 eV Total energy + Delta-G solvation = -3548.844256 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.36239 -40.31091 -38.07343 -34.81774 -34.27506 -34.09989 -32.11543 -30.71077 -30.23758 -29.31421 -25.47837 -25.20522 -23.27727 -22.70806 -22.35352 -21.18469 -20.23786 -18.81632 -18.01661 -17.44428 -16.98681 -16.56165 -16.35213 -15.29876 -15.16115 -14.95062 -14.45735 -14.16518 -13.92440 -13.68003 -13.50349 -13.23031 -13.02753 -12.55383 -11.96608 -11.87837 -11.62964 -11.40460 -11.02654 -10.93698 -10.73655 -10.59036 -10.44923 -10.42861 -10.22724 -10.07894 -9.90724 -9.51178 -9.08873 -8.99688 -8.53877 -7.96790 -6.61803 -6.17903 -4.33933 0.83921 1.35205 1.73076 1.86814 2.46815 2.75090 2.95973 3.04368 3.22002 3.26489 3.29468 3.56371 3.74478 4.20792 4.28199 4.38186 4.72909 4.96505 5.06659 5.12399 5.36687 5.47340 5.55165 5.66379 5.84952 5.96474 6.32302 6.50242 6.56038 6.65677 6.68296 6.77317 6.86005 7.01230 7.23194 7.35370 7.39271 7.54630 7.74137 7.74662 7.97183 7.97949 8.67481 9.31344 10.80353 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.017574 B = 0.003677 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.893563 B = 7613.556762 C = 8559.320466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.097 3.903 3 H 0.053 0.947 4 C -0.522 4.522 5 H 0.067 0.933 6 C 0.070 3.930 7 N -0.886 5.886 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.274 1.274 12 S -0.190 6.190 13 C -0.071 4.071 14 C -0.099 4.099 15 C -0.117 4.117 16 C -0.123 4.123 17 C -0.111 4.111 18 C 0.137 3.863 19 N -0.644 5.644 20 C 0.598 3.402 21 O -0.508 6.508 22 C -0.028 4.028 23 C -0.182 4.182 24 C -0.061 4.061 25 O 0.127 5.873 26 N -0.326 5.326 27 H 0.021 0.979 28 H 0.104 0.896 29 H 0.036 0.964 30 H 0.266 0.734 31 H 0.157 0.843 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.130 0.870 35 H 0.418 0.582 36 H 0.182 0.818 37 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.808 -5.838 16.323 18.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.030 4.030 3 H 0.070 0.930 4 C -0.560 4.560 5 H 0.086 0.914 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.725 3.275 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.199 1.199 12 S 0.057 5.943 13 C -0.187 4.187 14 C -0.123 4.123 15 C -0.137 4.137 16 C -0.145 4.145 17 C -0.133 4.133 18 C 0.037 3.963 19 N -0.289 5.289 20 C 0.382 3.618 21 O -0.382 6.382 22 C -0.187 4.187 23 C -0.205 4.205 24 C -0.142 4.142 25 O 0.049 5.951 26 N -0.025 5.025 27 H 0.040 0.960 28 H 0.122 0.878 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.175 0.825 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.147 0.853 35 H 0.256 0.744 36 H 0.200 0.800 37 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 5.799 -6.202 16.077 18.182 hybrid contribution 1.209 0.365 -1.230 1.763 sum 7.009 -5.838 14.847 17.425 Atomic orbital electron populations 1.21664 0.95072 0.99748 1.02282 1.21123 0.96002 0.96770 0.89154 0.92959 1.21238 1.32358 1.13158 0.89285 0.91432 1.24966 0.94615 0.94830 0.98971 1.69838 1.35743 1.22497 1.24246 0.86531 0.79454 0.79882 0.81608 1.19968 1.21099 1.19891 1.84686 0.99289 1.70288 1.39996 1.21544 0.97562 1.01497 0.98084 1.21659 0.95938 0.97016 0.97649 1.21107 0.93656 1.00463 0.98484 1.20900 0.99475 0.99538 0.94587 1.20848 0.92451 1.00640 0.99331 1.17148 0.91907 0.98110 0.89088 1.43263 1.36139 1.42743 1.06719 1.16875 0.82051 0.81999 0.80839 1.90806 1.30768 1.35160 1.81433 1.23510 0.99024 0.99630 0.96556 1.22774 1.03994 1.01647 0.92063 1.26069 0.93729 0.97460 0.96932 1.84823 1.49118 1.47920 1.13218 1.74266 1.15724 1.07749 1.04745 0.95985 0.87788 0.94471 0.92362 0.82546 0.86081 0.86202 0.85257 0.74374 0.80036 0.75820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 9.04 37.16 0.34 -2.62 16 2 C 0.10 2.32 2.01 -27.89 -0.06 2.26 16 3 H 0.05 1.34 7.18 -51.92 -0.37 0.96 16 4 C -0.52 -13.33 6.69 -34.44 -0.23 -13.56 16 5 H 0.07 1.78 7.71 -52.48 -0.40 1.37 16 6 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 7 N -0.89 -23.45 11.29 55.43 0.63 -22.83 16 8 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 9 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 12 S -0.19 -4.06 20.09 -107.50 -2.16 -6.22 16 13 C -0.07 -1.47 6.10 -38.89 -0.24 -1.71 16 14 C -0.10 -2.01 8.85 -39.40 -0.35 -2.36 16 15 C -0.12 -2.02 10.04 -39.57 -0.40 -2.42 16 16 C -0.12 -1.98 10.04 -39.56 -0.40 -2.38 16 17 C -0.11 -1.93 8.65 -39.42 -0.34 -2.27 16 18 C 0.14 2.58 6.29 -83.46 -0.53 2.06 16 19 N -0.64 -10.96 5.04 -10.44 -0.05 -11.02 16 20 C 0.60 9.58 7.59 -12.12 -0.09 9.49 16 21 O -0.51 -9.00 14.63 5.35 0.08 -8.93 16 22 C -0.03 -0.37 7.19 -82.53 -0.59 -0.96 16 23 C -0.18 -1.68 10.99 -39.07 -0.43 -2.11 16 24 C -0.06 -0.39 12.28 29.69 0.36 -0.03 16 25 O 0.13 1.22 11.18 17.25 0.19 1.42 16 26 N -0.33 -4.17 11.85 33.29 0.39 -3.77 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.10 2.60 5.96 -51.93 -0.31 2.29 16 29 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 31 H 0.16 3.52 4.90 -52.49 -0.26 3.27 16 32 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 33 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 34 H 0.13 2.15 6.40 -52.49 -0.34 1.81 16 35 H 0.42 6.95 7.69 -40.82 -0.31 6.63 16 36 H 0.18 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.23 0.25 8.06 -52.49 -0.42 -0.17 16 LS Contribution 332.63 15.07 5.01 5.01 Total: -1.00 -29.41 332.63 -7.64 -37.04 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -3.67 Total: 8.87 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -3.04 Total: -14.89 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.97 Total: -37.61 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: 0.27 Total: -7.51 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: -4.06 SS G_CDS: -2.16 Total: -6.22 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.41 -7.64 -37.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066856426.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.728 kcal (2) G-P(sol) polarization free energy of solvation -29.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds