Wall clock time and date at job start Tue Mar 31 2020 11:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47189 * 2 1 4 4 C 1.50697 * 109.47168 * 239.99809 * 2 1 3 5 5 H 1.08005 * 120.00160 * 239.99396 * 4 2 1 6 6 C 1.37876 * 119.99979 * 60.00241 * 4 2 1 7 7 N 1.31509 * 120.00117 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99941 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46925 * 59.99664 * 8 6 4 10 10 H 1.48497 * 109.47103 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46903 * 299.99689 * 8 6 4 12 12 S 1.81401 * 109.47275 * 119.99529 * 2 1 3 13 13 C 1.76202 * 103.00127 * 190.49742 * 12 2 1 14 14 C 1.38780 * 120.10694 * 358.48982 * 13 12 2 15 15 C 1.38194 * 119.99447 * 180.02562 * 14 13 12 16 16 C 1.38307 * 120.20169 * 0.02636 * 15 14 13 17 17 C 1.38236 * 120.21726 * 359.94912 * 16 15 14 18 18 C 1.38676 * 120.00421 * 0.30489 * 17 16 15 19 19 N 1.40032 * 120.10503 * 179.72027 * 18 17 16 20 20 C 1.34777 * 120.00002 * 33.23848 * 19 18 17 21 21 O 1.21514 * 119.99903 * 5.12910 * 20 19 18 22 22 C 1.48293 * 120.00033 * 185.12608 * 20 19 18 23 23 C 1.42294 * 126.93859 * 179.71101 * 22 20 19 24 24 C 1.35311 * 103.91805 * 179.85671 * 23 22 20 25 25 O 1.34014 * 106.67515 * 0.40434 * 24 23 22 26 26 N 1.20910 * 111.85142 * 359.72558 * 25 24 23 27 27 H 1.09000 * 109.47271 * 304.80470 * 1 2 3 28 28 H 1.09000 * 109.47101 * 64.80453 * 1 2 3 29 29 H 1.08997 * 109.47001 * 184.80748 * 1 2 3 30 30 H 0.97003 * 119.99789 * 180.02562 * 7 6 4 31 31 H 1.08000 * 120.00583 * 0.02562 * 14 13 12 32 32 H 1.08000 * 119.90026 * 180.02562 * 15 14 13 33 33 H 1.08001 * 119.89304 * 179.97438 * 16 15 14 34 34 H 1.08001 * 119.99923 * 180.02562 * 17 16 15 35 35 H 0.97002 * 120.00408 * 213.24132 * 19 18 17 36 36 H 1.07994 * 128.03781 * 359.97041 * 23 22 20 37 37 H 1.07995 * 126.65616 * 180.13215 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 1.8281 -2.5199 -4.0080 10 1 1.8270 -0.4201 -5.2204 11 1 3.8076 -1.1190 -4.0076 12 16 2.1347 -0.8550 1.4812 13 6 3.8584 -0.4896 1.4739 14 6 4.4053 0.2668 0.4469 15 6 5.7576 0.5515 0.4431 16 6 6.5697 0.0844 1.4605 17 6 6.0339 -0.6694 2.4879 18 6 4.6790 -0.9648 2.4976 19 7 4.1350 -1.7331 3.5343 20 6 4.6421 -1.6401 4.7796 21 8 5.5079 -0.8232 5.0236 22 6 4.1434 -2.5348 5.8520 23 6 4.5748 -2.5678 7.2075 24 6 3.8192 -3.5415 7.7659 25 8 3.0322 -4.0226 6.7937 26 7 3.2209 -3.4582 5.7413 27 1 -0.3634 0.5866 0.8438 28 1 -0.3633 0.4375 -0.9299 29 1 -0.3633 -1.0240 0.0861 30 1 0.7082 1.1607 -3.4845 31 1 3.7742 0.6329 -0.3494 32 1 6.1815 1.1407 -0.3566 33 1 7.6260 0.3095 1.4524 34 1 6.6713 -1.0321 3.2808 35 1 3.3933 -2.3323 3.3562 36 1 5.3286 -1.9563 7.6810 37 1 3.8482 -3.8703 8.7942 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066856426.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:14 Heat of formation + Delta-G solvation = 38.933157 kcal Electronic energy + Delta-G solvation = -23284.387590 eV Core-core repulsion = 19734.816910 eV Total energy + Delta-G solvation = -3549.570681 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -46.18705 -41.62671 -39.45164 -36.35080 -35.90680 -35.05883 -32.89291 -32.48194 -31.88531 -30.67214 -27.41179 -26.34463 -24.16999 -24.01639 -23.87749 -22.77420 -21.43503 -19.81347 -18.87479 -18.75033 -18.49753 -18.06326 -17.81735 -17.03686 -16.54951 -16.15858 -15.92782 -15.43520 -15.19055 -15.11766 -14.88996 -14.63133 -14.23003 -14.03750 -13.56550 -13.42084 -12.97561 -12.88601 -12.78157 -12.60369 -12.42348 -12.29835 -11.92290 -11.68628 -11.59489 -11.41971 -11.28831 -10.93469 -10.75329 -10.59144 -10.48164 -9.39879 -8.37050 -8.05582 -6.37389 -0.18287 0.30501 0.41726 0.79504 0.84856 1.40779 1.41476 1.48700 1.63066 1.80057 1.89808 2.30287 2.38272 2.74332 2.80120 3.06807 3.56898 3.90550 3.95534 4.14907 4.22526 4.35556 4.44021 4.50608 4.58979 4.65852 4.78964 4.86863 4.91243 4.98428 5.17950 5.23142 5.29097 5.42507 5.56420 5.58044 5.74607 5.97048 6.01981 6.06133 6.64676 6.65890 7.03675 7.29656 8.82031 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.017574 B = 0.003677 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.893563 B = 7613.556762 C = 8559.320466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.095 3.905 3 H 0.027 0.973 4 C -0.526 4.526 5 H 0.055 0.945 6 C 0.031 3.969 7 N -0.908 5.908 8 Si 0.953 3.047 9 H -0.274 1.274 10 H -0.280 1.280 11 H -0.271 1.271 12 S -0.184 6.184 13 C -0.099 4.099 14 C -0.117 4.117 15 C -0.117 4.117 16 C -0.105 4.105 17 C -0.116 4.116 18 C 0.133 3.867 19 N -0.648 5.648 20 C 0.598 3.402 21 O -0.530 6.530 22 C -0.061 4.061 23 C -0.196 4.196 24 C -0.024 4.024 25 O 0.135 5.865 26 N -0.355 5.355 27 H 0.036 0.964 28 H 0.085 0.915 29 H 0.037 0.963 30 H 0.268 0.732 31 H 0.129 0.871 32 H 0.147 0.853 33 H 0.162 0.838 34 H 0.139 0.861 35 H 0.417 0.583 36 H 0.198 0.802 37 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.457 -6.949 18.206 21.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.032 4.032 3 H 0.045 0.955 4 C -0.565 4.565 5 H 0.073 0.927 6 C -0.171 4.171 7 N -0.546 5.546 8 Si 0.779 3.221 9 H -0.199 1.199 10 H -0.205 1.205 11 H -0.196 1.196 12 S 0.062 5.938 13 C -0.214 4.214 14 C -0.141 4.141 15 C -0.137 4.137 16 C -0.126 4.126 17 C -0.137 4.137 18 C 0.033 3.967 19 N -0.293 5.293 20 C 0.385 3.615 21 O -0.405 6.405 22 C -0.218 4.218 23 C -0.219 4.219 24 C -0.104 4.104 25 O 0.055 5.945 26 N -0.052 5.052 27 H 0.055 0.945 28 H 0.103 0.897 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.146 0.854 32 H 0.164 0.836 33 H 0.179 0.821 34 H 0.157 0.843 35 H 0.255 0.745 36 H 0.215 0.785 37 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges 7.462 -7.307 17.952 20.769 hybrid contribution 0.782 0.675 -1.633 1.932 sum 8.244 -6.632 16.319 19.449 Atomic orbital electron populations 1.21530 0.94656 0.99831 1.01900 1.20909 0.96411 0.95652 0.90271 0.95456 1.21279 1.32204 1.12746 0.90258 0.92672 1.25602 0.94770 0.95407 1.01286 1.69936 1.36496 1.23442 1.24760 0.85669 0.78973 0.78780 0.78723 1.19915 1.20510 1.19573 1.84408 1.00866 1.70349 1.38217 1.21595 0.96883 1.03365 0.99532 1.21531 0.97243 0.98063 0.97298 1.21380 0.92379 1.00374 0.99604 1.21336 1.01238 0.97227 0.92815 1.21110 0.91865 1.00755 1.00003 1.17342 0.92442 0.97889 0.89002 1.43345 1.36323 1.42626 1.07032 1.17270 0.81436 0.81944 0.80857 1.90767 1.31709 1.36203 1.81806 1.23382 1.00707 1.00376 0.97313 1.23080 1.05251 1.03114 0.90435 1.27071 0.90525 0.94934 0.97831 1.84784 1.49166 1.47259 1.13268 1.74287 1.16254 1.08287 1.06390 0.94497 0.89695 0.94355 0.92287 0.85357 0.83563 0.82069 0.84294 0.74478 0.78533 0.70114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.70 9.04 71.98 0.65 -5.05 16 2 C 0.10 4.76 2.01 29.85 0.06 4.82 16 3 H 0.03 1.48 7.18 -2.39 -0.02 1.47 16 4 C -0.53 -27.75 6.69 25.60 0.17 -27.58 16 5 H 0.06 2.99 7.71 -2.91 -0.02 2.97 16 6 C 0.03 1.64 5.29 84.66 0.45 2.09 16 7 N -0.91 -49.24 11.29 21.45 0.24 -49.00 16 8 Si 0.95 42.08 29.54 68.60 2.03 44.10 16 9 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 10 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 11 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 12 S -0.18 -8.17 20.09 -56.49 -1.13 -9.30 16 13 C -0.10 -4.17 6.10 22.72 0.14 -4.03 16 14 C -0.12 -4.90 8.85 22.39 0.20 -4.70 16 15 C -0.12 -3.93 10.04 22.28 0.22 -3.71 16 16 C -0.11 -3.13 10.04 22.29 0.22 -2.90 16 17 C -0.12 -3.90 8.65 22.37 0.19 -3.70 16 18 C 0.13 5.05 6.29 38.25 0.24 5.29 16 19 N -0.65 -22.47 5.04 -305.22 -1.54 -24.01 16 20 C 0.60 19.22 7.59 86.92 0.66 19.88 16 21 O -0.53 -18.62 14.63 -3.76 -0.06 -18.67 16 22 C -0.06 -1.56 7.19 42.95 0.31 -1.25 16 23 C -0.20 -3.13 10.99 22.60 0.25 -2.88 16 24 C -0.02 -0.21 12.28 67.14 0.82 0.62 16 25 O 0.14 2.29 11.18 71.89 0.80 3.09 16 26 N -0.35 -8.78 11.85 -49.51 -0.59 -9.37 16 27 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.08 4.38 5.96 -2.39 -0.01 4.37 16 29 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 31 H 0.13 6.08 4.90 -2.91 -0.01 6.07 16 32 H 0.15 4.09 8.06 -2.91 -0.02 4.07 16 33 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 34 H 0.14 4.42 6.40 -2.91 -0.02 4.40 16 35 H 0.42 14.33 7.69 -92.71 -0.71 13.61 16 36 H 0.20 2.41 8.06 -2.91 -0.02 2.39 16 37 H 0.28 -1.16 8.06 -2.91 -0.02 -1.19 16 Total: -1.00 -66.68 332.63 4.77 -61.92 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: 0.42 Total: 24.34 kcal Atomic # 6 Polarization: -27.69 SS G_CDS: 4.59 Total: -23.10 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -1.88 Total: -82.38 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: 0.75 Total: -15.58 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.10 kcal Atomic # 16 Polarization: -8.17 SS G_CDS: -1.13 Total: -9.30 kcal Total: -66.68 4.77 -61.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066856426.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.850 kcal (2) G-P(sol) polarization free energy of solvation -66.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds