Wall clock time and date at job start Tue Mar 31 2020 11:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32560 * 121.64474 * 2 1 4 4 S 1.77230 * 105.32057 * 180.19841 * 3 2 1 5 5 C 1.72213 * 94.84625 * 359.76449 * 4 3 2 6 6 O 1.21821 * 127.06253 * 180.02562 * 5 4 3 7 7 N 1.34241 * 105.88225 * 0.02562 * 5 4 3 8 8 C 1.46500 * 121.38069 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.46875 * 95.23152 * 8 7 5 10 10 O 1.21272 * 120.00489 * 354.93331 * 9 8 7 11 11 N 1.34781 * 119.99646 * 175.21648 * 9 8 7 12 12 C 1.37140 * 120.00475 * 2.97691 * 11 9 8 13 13 H 1.08006 * 119.99674 * 305.61917 * 12 11 9 14 14 C 1.38883 * 120.00406 * 125.61514 * 12 11 9 15 15 N 1.31414 * 120.00541 * 181.35905 * 14 12 11 16 16 Si 1.86807 * 119.99726 * 1.36094 * 14 12 11 17 17 H 1.48504 * 109.46933 * 95.24593 * 16 14 12 18 18 H 1.48500 * 109.47217 * 215.24475 * 16 14 12 19 19 H 1.48498 * 109.47310 * 335.24805 * 16 14 12 20 20 C 1.39792 * 119.99647 * 182.97817 * 11 9 8 21 21 C 1.38953 * 120.07919 * 351.37327 * 20 11 9 22 22 C 1.38084 * 119.92157 * 179.78649 * 21 20 11 23 23 C 1.38314 * 120.07868 * 0.47310 * 22 21 20 24 24 C 1.38309 * 120.15363 * 359.78094 * 23 22 21 25 25 C 1.38088 * 120.07609 * 359.97438 * 24 23 22 26 26 H 1.09000 * 109.47388 * 270.23994 * 1 2 3 27 27 H 1.09005 * 109.47532 * 30.23967 * 1 2 3 28 28 H 1.09003 * 109.47525 * 150.23897 * 1 2 3 29 29 H 1.08000 * 127.34507 * 359.93959 * 3 2 1 30 30 H 1.08999 * 109.47264 * 335.23333 * 8 7 5 31 31 H 1.08998 * 109.47286 * 215.23009 * 8 7 5 32 32 H 0.97000 * 120.00674 * 180.02562 * 15 14 12 33 33 H 1.08001 * 120.04081 * 0.02562 * 21 20 11 34 34 H 1.07998 * 119.96661 * 180.22991 * 22 21 20 35 35 H 1.07994 * 119.92571 * 179.76432 * 23 22 21 36 36 H 1.07995 * 119.96111 * 179.97438 * 24 23 22 37 37 H 1.08001 * 120.03711 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.1285 0.0000 4 16 3.9033 0.6304 -0.0059 5 6 3.5607 -1.0573 -0.0009 6 8 4.3672 -1.9703 -0.0019 7 7 2.2222 -1.1604 0.0042 8 6 1.5577 -2.4660 0.0090 9 6 1.2196 -2.8524 1.4259 10 8 1.5863 -2.1557 2.3483 11 7 0.5146 -3.9753 1.6682 12 6 0.1575 -4.7981 0.6308 13 1 -0.3840 -4.3982 -0.2138 14 6 0.4923 -6.1455 0.6661 15 7 0.1736 -6.9285 -0.3400 16 14 1.3956 -6.8449 2.1441 17 1 0.4145 -7.4332 3.0910 18 1 2.3412 -7.8976 1.6937 19 1 2.1492 -5.7601 2.8226 20 6 0.1474 -4.3011 2.9770 21 6 0.6559 -3.5721 4.0450 22 6 0.2876 -3.8940 5.3363 23 6 -0.5788 -4.9470 5.5680 24 6 -1.0827 -5.6782 4.5076 25 6 -0.7226 -5.3586 3.2134 26 1 -0.3634 0.0043 1.0276 27 1 -0.3634 0.8878 -0.5176 28 1 -0.3634 -0.8921 -0.5101 29 1 1.8153 2.1367 -0.0009 30 1 2.2229 -3.2139 -0.4227 31 1 0.6426 -2.4101 -0.5805 32 1 0.4070 -7.8696 -0.3152 33 1 1.3354 -2.7521 3.8652 34 1 0.6795 -3.3254 6.1667 35 1 -0.8622 -5.1990 6.5791 36 1 -1.7586 -6.5000 4.6921 37 1 -1.1161 -5.9302 2.3859 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068916906.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:15 Heat of formation + Delta-G solvation = 6.042402 kcal Electronic energy + Delta-G solvation = -24803.067501 eV Core-core repulsion = 21252.070570 eV Total energy + Delta-G solvation = -3550.996931 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.48119 -41.41483 -39.21922 -38.60882 -37.04517 -34.25815 -33.58425 -31.81045 -31.71302 -30.30233 -27.73512 -27.11591 -24.94257 -23.71704 -23.15114 -21.85984 -21.13510 -19.95282 -19.07494 -18.61908 -18.07682 -17.61323 -17.27940 -16.96330 -16.55224 -16.02873 -15.86540 -15.41800 -15.24172 -15.04095 -14.77325 -14.60890 -14.52266 -14.34807 -14.24643 -14.04104 -13.45259 -13.25535 -12.97666 -12.73446 -12.56456 -12.48128 -12.16144 -12.11470 -11.94572 -11.34538 -11.25846 -10.96183 -10.85299 -10.16476 -9.71021 -8.94423 -8.93477 -8.60235 -6.59956 -0.14662 0.33537 0.39639 0.48208 0.84144 1.10292 1.16824 1.24667 1.33757 1.61902 1.69011 2.06381 2.38520 2.66719 3.02564 3.52423 3.64253 3.82776 4.11211 4.14202 4.19908 4.25123 4.41629 4.56833 4.62027 4.65523 4.70877 4.73792 4.79848 4.91371 5.16989 5.24907 5.43048 5.51469 5.60574 5.67165 5.74018 5.88150 5.94729 6.21237 6.31003 6.72786 7.06855 7.37528 8.40674 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.016068 B = 0.005175 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.209432 B = 5409.376102 C = 6085.766423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.092 3.908 3 C -0.220 4.220 4 S 0.019 5.981 5 C 0.457 3.543 6 O -0.529 6.529 7 N -0.518 5.518 8 C 0.108 3.892 9 C 0.482 3.518 10 O -0.563 6.563 11 N -0.413 5.413 12 C -0.367 4.367 13 H 0.107 0.893 14 C 0.062 3.938 15 N -0.879 5.879 16 Si 0.908 3.092 17 H -0.233 1.233 18 H -0.295 1.295 19 H -0.287 1.287 20 C 0.129 3.871 21 C -0.204 4.204 22 C -0.106 4.106 23 C -0.155 4.155 24 C -0.105 4.105 25 C -0.177 4.177 26 H 0.078 0.922 27 H 0.130 0.870 28 H 0.072 0.928 29 H 0.237 0.763 30 H 0.109 0.891 31 H 0.146 0.854 32 H 0.285 0.715 33 H 0.160 0.840 34 H 0.144 0.856 35 H 0.154 0.846 36 H 0.146 0.854 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.545 12.574 2.673 13.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.017 4.017 3 C -0.357 4.357 4 S 0.262 5.738 5 C 0.142 3.858 6 O -0.413 6.413 7 N -0.237 5.237 8 C -0.020 4.020 9 C 0.273 3.727 10 O -0.446 6.446 11 N -0.124 5.124 12 C -0.493 4.493 13 H 0.124 0.876 14 C -0.146 4.146 15 N -0.514 5.514 16 Si 0.735 3.265 17 H -0.156 1.156 18 H -0.222 1.222 19 H -0.213 1.213 20 C 0.034 3.966 21 C -0.224 4.224 22 C -0.124 4.124 23 C -0.174 4.174 24 C -0.123 4.123 25 C -0.198 4.198 26 H 0.096 0.904 27 H 0.148 0.852 28 H 0.090 0.910 29 H 0.253 0.747 30 H 0.127 0.873 31 H 0.164 0.836 32 H 0.095 0.905 33 H 0.176 0.824 34 H 0.162 0.838 35 H 0.172 0.828 36 H 0.163 0.837 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.703 12.826 2.915 13.263 hybrid contribution -0.509 -1.933 0.298 2.021 sum -2.212 10.893 3.213 11.571 Atomic orbital electron populations 1.20901 0.84648 1.05979 1.04181 1.19978 0.97290 0.84092 1.00319 1.25405 0.90746 1.02375 1.17191 1.84716 1.10934 0.97756 1.80370 1.22161 0.84040 0.96989 0.82660 1.90907 1.50122 1.44635 1.55628 1.45841 1.06182 1.07870 1.63827 1.21425 1.01488 0.84159 0.94915 1.21313 0.77752 0.81883 0.91771 1.90260 1.54512 1.54815 1.45023 1.41426 1.45248 1.20833 1.04910 1.18976 1.39766 0.91070 0.99514 0.87565 1.25757 0.94363 0.96898 0.97584 1.69652 1.44025 1.07022 1.30661 0.86461 0.79908 0.78598 0.81566 1.15607 1.22246 1.21327 1.18721 0.96027 0.96311 0.85553 1.22698 1.03660 1.03587 0.92407 1.21416 0.97441 0.97516 0.96026 1.21415 0.99474 0.96578 0.99888 1.21273 0.99708 0.99996 0.91370 1.21058 1.00698 0.99158 0.98858 0.90359 0.85199 0.90961 0.74697 0.87285 0.83636 0.90505 0.82360 0.83780 0.82797 0.83671 0.85865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.86 9.70 71.24 0.69 -1.17 16 2 C 0.09 2.34 6.56 40.71 0.27 2.61 16 3 C -0.22 -4.49 11.24 66.67 0.75 -3.74 16 4 S 0.02 0.54 22.97 -56.49 -1.30 -0.76 16 5 C 0.46 17.54 8.28 129.87 1.07 18.62 16 6 O -0.53 -24.69 17.47 -4.74 -0.08 -24.77 16 7 N -0.52 -17.80 2.11 -647.51 -1.36 -19.16 16 8 C 0.11 4.11 4.53 85.63 0.39 4.50 16 9 C 0.48 21.49 7.62 87.66 0.67 22.16 16 10 O -0.56 -26.42 12.85 -3.00 -0.04 -26.46 16 11 N -0.41 -19.52 2.31 -458.90 -1.06 -20.58 16 12 C -0.37 -18.04 8.01 84.02 0.67 -17.36 16 13 H 0.11 5.23 7.70 -2.91 -0.02 5.21 16 14 C 0.06 3.19 4.60 84.91 0.39 3.58 16 15 N -0.88 -46.38 13.96 21.65 0.30 -46.07 16 16 Si 0.91 43.68 23.84 68.60 1.64 45.31 16 17 H -0.23 -10.24 6.13 99.48 0.61 -9.63 16 18 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 19 H -0.29 -15.21 6.48 99.48 0.64 -14.56 16 20 C 0.13 5.93 4.12 38.22 0.16 6.09 16 21 C -0.20 -8.81 9.03 22.40 0.20 -8.60 16 22 C -0.11 -3.67 10.04 22.25 0.22 -3.44 16 23 C -0.15 -4.82 10.04 22.30 0.22 -4.60 16 24 C -0.11 -3.65 9.76 22.25 0.22 -3.44 16 25 C -0.18 -7.55 5.58 22.41 0.13 -7.43 16 26 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.13 1.36 8.10 -2.38 -0.02 1.34 16 28 H 0.07 1.46 6.27 -2.39 -0.01 1.45 16 29 H 0.24 2.47 8.06 -2.91 -0.02 2.44 16 30 H 0.11 4.61 7.68 -2.39 -0.02 4.59 16 31 H 0.15 4.64 5.94 -2.39 -0.01 4.63 16 32 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 33 H 0.16 7.39 4.59 -57.68 -0.26 7.12 16 34 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 35 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 36 H 0.15 4.09 8.06 -2.91 -0.02 4.07 16 37 H 0.12 5.59 5.68 -2.91 -0.02 5.58 16 Total: -1.00 -68.39 318.98 4.86 -63.54 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.71 Total: 21.18 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: 6.05 Total: 7.78 kcal Atomic # 7 Polarization: -83.69 SS G_CDS: -2.12 Total: -85.81 kcal Atomic # 8 Polarization: -51.11 SS G_CDS: -0.12 Total: -51.23 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.64 Total: 45.31 kcal Atomic # 16 Polarization: 0.54 SS G_CDS: -1.30 Total: -0.76 kcal Total: -68.39 4.86 -63.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068916906.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.578 kcal (2) G-P(sol) polarization free energy of solvation -68.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds