Wall clock time and date at job start Tue Mar 31 2020 11:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34956 * 126.03764 * 2 1 4 4 C 1.35317 * 107.74704 * 180.02562 * 3 2 1 5 5 C 1.50698 * 126.03921 * 180.02562 * 4 3 2 6 6 O 1.45195 * 109.47207 * 89.99917 * 5 4 3 7 7 C 1.34787 * 116.99836 * 179.97438 * 6 5 4 8 8 O 1.21530 * 120.00176 * 0.02562 * 7 6 5 9 9 C 1.47284 * 119.99633 * 180.02562 * 7 6 5 10 10 C 1.39744 * 120.22157 * 359.97438 * 9 7 6 11 11 C 1.37782 * 119.92927 * 180.02562 * 10 9 7 12 12 C 1.38677 * 120.39398 * 0.02562 * 11 10 9 13 13 C 1.37903 * 120.44992 * 359.97438 * 12 11 10 14 14 C 1.39124 * 120.05674 * 0.02562 * 13 12 11 15 15 S 1.76199 * 120.19495 * 179.97438 * 14 13 12 16 16 C 1.76207 * 100.00082 * 6.86354 * 15 14 13 17 17 H 1.08000 * 119.99976 * 5.65253 * 16 15 14 18 18 C 1.38807 * 120.00269 * 185.66140 * 16 15 14 19 19 N 1.31552 * 119.99560 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00224 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47437 * 89.99705 * 20 18 16 22 22 H 1.48504 * 109.47057 * 209.99854 * 20 18 16 23 23 H 1.48502 * 109.46999 * 329.99301 * 20 18 16 24 24 C 1.39870 * 107.91891 * 0.26484 * 4 3 2 25 25 N 1.30838 * 108.20177 * 359.55603 * 24 4 3 26 26 H 1.09000 * 109.47304 * 89.99831 * 1 2 3 27 27 H 1.09001 * 109.46878 * 209.99838 * 1 2 3 28 28 H 1.09001 * 109.47376 * 329.99522 * 1 2 3 29 29 H 1.07995 * 126.12550 * 0.02562 * 3 2 1 30 30 H 1.09001 * 109.47034 * 329.99993 * 5 4 3 31 31 H 1.09005 * 109.46963 * 210.00211 * 5 4 3 32 32 H 1.08001 * 120.03580 * 0.02562 * 10 9 7 33 33 H 1.07997 * 119.80286 * 180.02562 * 11 10 9 34 34 H 1.08001 * 119.77650 * 179.71374 * 12 11 10 35 35 H 1.08003 * 119.97509 * 180.02562 * 13 12 11 36 36 H 0.97006 * 119.99620 * 180.02562 * 19 18 16 37 37 H 1.07999 * 125.89544 * 179.73358 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 -0.0006 5 6 4.7680 1.5454 -0.0002 6 8 5.1615 1.8267 1.3688 7 6 6.2474 2.6053 1.5456 8 8 6.8486 3.0377 0.5820 9 6 6.7054 2.9322 2.9068 10 6 6.0172 2.4379 4.0181 11 6 6.4506 2.7479 5.2887 12 6 7.5672 3.5492 5.4732 13 6 8.2583 4.0455 4.3879 14 6 7.8371 3.7444 3.0966 15 16 8.7170 4.3771 1.7073 16 6 10.0947 5.1100 2.5255 17 1 10.2196 4.9842 3.5909 18 6 11.0195 5.8493 1.8009 19 7 10.8675 6.0023 0.5032 20 14 12.4804 6.6257 2.6682 21 1 13.6181 5.6714 2.6724 22 1 12.8775 7.8663 1.9550 23 1 12.1069 6.9569 4.0668 24 6 3.5347 -0.7320 -0.0071 25 7 2.2892 -1.1327 -0.0007 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5139 29 1 1.9281 2.1193 0.0004 30 1 4.5441 2.4806 -0.5134 31 1 5.5820 1.0346 -0.5147 32 1 5.1466 1.8137 3.8811 33 1 5.9175 2.3645 6.1461 34 1 7.8955 3.7897 6.4736 35 1 9.1272 4.6686 4.5404 36 1 11.5139 6.5187 -0.0033 37 1 4.4054 -1.3709 -0.0132 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078341643.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:38 Heat of formation + Delta-G solvation = 26.435421 kcal Electronic energy + Delta-G solvation = -22654.541956 eV Core-core repulsion = 19104.429332 eV Total energy + Delta-G solvation = -3550.112623 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.38215 -39.76111 -37.82163 -35.84725 -33.60235 -32.80515 -31.41328 -30.55078 -30.31258 -27.96826 -25.87391 -25.43903 -23.39037 -21.95514 -21.29485 -20.59145 -20.34007 -18.12617 -17.26227 -17.12118 -16.36130 -15.77033 -15.67549 -15.55617 -15.11509 -14.63276 -14.26560 -14.10422 -13.69288 -13.43112 -13.19419 -13.02794 -12.97227 -12.81959 -12.54808 -12.06394 -11.87067 -11.54588 -11.23128 -11.21615 -10.96096 -10.88206 -10.35927 -10.17649 -10.11290 -9.77808 -9.62068 -9.54564 -8.77268 -8.71919 -8.38071 -8.21244 -6.61438 -6.51503 -4.22855 1.41067 1.63708 2.03045 2.26571 2.43334 3.06785 3.10652 3.17432 3.27428 3.34574 3.53311 4.01719 4.26874 4.43044 4.62492 4.81291 4.89890 4.90341 5.06755 5.07746 5.10175 5.28070 5.38110 5.49109 5.59801 5.62743 5.70232 5.97915 5.99377 6.16144 6.34412 6.42292 6.61074 6.74635 6.87859 6.89763 7.09637 7.11717 7.41534 7.47555 7.57251 8.11695 8.48896 8.95037 10.52068 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.021724 B = 0.002937 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.616743 B = 9532.231451 C =10528.618359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.378 5.378 3 C 0.081 3.919 4 C -0.241 4.241 5 C 0.148 3.852 6 O -0.359 6.359 7 C 0.496 3.504 8 O -0.486 6.486 9 C -0.165 4.165 10 C -0.038 4.038 11 C -0.192 4.192 12 C -0.069 4.069 13 C -0.157 4.157 14 C -0.054 4.054 15 S 0.184 5.816 16 C -0.594 4.594 17 H 0.093 0.907 18 C 0.083 3.917 19 N -0.857 5.857 20 Si 0.921 3.079 21 H -0.273 1.273 22 H -0.279 1.279 23 H -0.267 1.267 24 C 0.071 3.929 25 N -0.301 5.301 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.177 0.823 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.123 0.877 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.141 0.859 36 H 0.276 0.724 37 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.897 -8.485 1.702 18.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.160 5.160 3 C -0.066 4.066 4 C -0.253 4.253 5 C 0.073 3.927 6 O -0.277 6.277 7 C 0.341 3.659 8 O -0.375 6.375 9 C -0.178 4.178 10 C -0.058 4.058 11 C -0.216 4.216 12 C -0.092 4.092 13 C -0.181 4.181 14 C -0.174 4.174 15 S 0.449 5.551 16 C -0.740 4.740 17 H 0.110 0.890 18 C -0.128 4.128 19 N -0.489 5.489 20 Si 0.746 3.254 21 H -0.198 1.198 22 H -0.204 1.204 23 H -0.192 1.192 24 C -0.116 4.116 25 N -0.122 5.122 26 H 0.093 0.907 27 H 0.108 0.892 28 H 0.106 0.894 29 H 0.195 0.805 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.141 0.859 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.158 0.842 36 H 0.086 0.914 37 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -17.608 -9.144 -0.288 19.843 hybrid contribution 1.638 1.288 1.791 2.748 sum -15.970 -7.856 1.503 17.861 Atomic orbital electron populations 1.21867 0.74087 1.04614 1.03376 1.48499 1.06732 1.03917 1.56851 1.22428 0.90770 0.93550 0.99855 1.19766 0.93614 0.93884 1.18026 1.20880 0.93066 0.97669 0.81104 1.86605 1.45056 1.64775 1.31252 1.21157 0.78172 0.76330 0.90203 1.90841 1.54241 1.50450 1.42010 1.18329 1.01033 1.08808 0.89660 1.21096 0.97216 0.95720 0.91725 1.20710 0.99912 1.04638 0.96349 1.21145 0.94521 0.95399 0.98105 1.21395 1.02287 1.03427 0.91023 1.23073 0.96346 0.96751 1.01218 1.84681 1.15489 1.53719 1.01260 1.24029 1.11913 1.39241 0.98865 0.88954 1.25117 0.98255 0.94560 0.94848 1.69972 1.35767 1.37016 1.06185 0.86116 0.80917 0.78678 0.79675 1.19800 1.20443 1.19175 1.23872 0.95252 0.94410 0.98053 1.77382 1.01617 1.08118 1.25088 0.90729 0.89242 0.89355 0.80547 0.90798 0.90424 0.85902 0.86872 0.86850 0.84167 0.91431 0.79680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.55 11.47 59.85 0.69 1.24 16 2 N -0.38 -3.83 4.01 -68.16 -0.27 -4.10 16 3 C 0.08 0.83 11.40 -17.22 -0.20 0.63 16 4 C -0.24 -2.93 5.74 -105.05 -0.60 -3.53 16 5 C 0.15 2.04 5.95 36.00 0.21 2.25 16 6 O -0.36 -5.98 9.45 -40.73 -0.39 -6.37 16 7 C 0.50 9.94 7.87 34.41 0.27 10.21 16 8 O -0.49 -11.06 13.57 -19.29 -0.26 -11.32 16 9 C -0.17 -3.36 5.89 -104.77 -0.62 -3.98 16 10 C -0.04 -0.65 9.61 -39.19 -0.38 -1.02 16 11 C -0.19 -3.04 10.02 -39.59 -0.40 -3.43 16 12 C -0.07 -1.18 10.03 -39.54 -0.40 -1.58 16 13 C -0.16 -3.23 9.22 -39.38 -0.36 -3.59 16 14 C -0.05 -1.23 6.15 -38.37 -0.24 -1.47 16 15 S 0.18 4.83 18.56 -107.50 -2.00 2.84 16 16 C -0.59 -16.07 9.00 30.94 0.28 -15.79 16 17 H 0.09 2.36 4.98 -52.49 -0.26 2.10 16 18 C 0.08 2.25 5.49 -17.46 -0.10 2.15 16 19 N -0.86 -24.26 13.22 55.49 0.73 -23.53 16 20 Si 0.92 20.33 29.55 -169.99 -5.02 15.30 16 21 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 23 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 24 C 0.07 0.84 11.96 -17.36 -0.21 0.64 16 25 N -0.30 -3.76 12.58 30.62 0.39 -3.37 16 26 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.18 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.12 1.83 7.61 -52.49 -0.40 1.43 16 33 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 34 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 35 H 0.14 2.99 5.04 -52.48 -0.26 2.72 16 36 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 37 H 0.19 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 340.94 15.07 5.14 5.14 Total: -1.00 -33.14 340.94 -7.59 -40.73 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -3.86 Total: 1.96 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -2.04 Total: -17.28 kcal Atomic # 7 Polarization: -31.85 SS G_CDS: 0.85 Total: -31.00 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.65 Total: -17.69 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: 4.83 SS G_CDS: -2.00 Total: 2.84 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.14 -7.59 -40.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078341643.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.166 kcal (2) G-P(sol) polarization free energy of solvation -33.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds