Wall clock time and date at job start Tue Mar 31 2020 11:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34956 * 126.03764 * 2 1 4 4 C 1.35317 * 107.74704 * 180.02562 * 3 2 1 5 5 C 1.50698 * 126.03921 * 180.02562 * 4 3 2 6 6 O 1.45195 * 109.47207 * 89.99917 * 5 4 3 7 7 C 1.34787 * 116.99836 * 179.97438 * 6 5 4 8 8 O 1.21530 * 120.00176 * 0.02562 * 7 6 5 9 9 C 1.47284 * 119.99633 * 180.02562 * 7 6 5 10 10 C 1.39744 * 120.22157 * 359.97438 * 9 7 6 11 11 C 1.37782 * 119.92927 * 180.02562 * 10 9 7 12 12 C 1.38677 * 120.39398 * 0.02562 * 11 10 9 13 13 C 1.37903 * 120.44992 * 359.97438 * 12 11 10 14 14 C 1.39124 * 120.05674 * 0.02562 * 13 12 11 15 15 S 1.76199 * 120.19495 * 179.97438 * 14 13 12 16 16 C 1.76207 * 100.00082 * 6.86354 * 15 14 13 17 17 H 1.08000 * 119.99976 * 5.65253 * 16 15 14 18 18 C 1.38807 * 120.00269 * 185.66140 * 16 15 14 19 19 N 1.31552 * 119.99560 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00224 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47437 * 89.99705 * 20 18 16 22 22 H 1.48504 * 109.47057 * 209.99854 * 20 18 16 23 23 H 1.48502 * 109.46999 * 329.99301 * 20 18 16 24 24 C 1.39870 * 107.91891 * 0.26484 * 4 3 2 25 25 N 1.30838 * 108.20177 * 359.55603 * 24 4 3 26 26 H 1.09000 * 109.47304 * 89.99831 * 1 2 3 27 27 H 1.09001 * 109.46878 * 209.99838 * 1 2 3 28 28 H 1.09001 * 109.47376 * 329.99522 * 1 2 3 29 29 H 1.07995 * 126.12550 * 0.02562 * 3 2 1 30 30 H 1.09001 * 109.47034 * 329.99993 * 5 4 3 31 31 H 1.09005 * 109.46963 * 210.00211 * 5 4 3 32 32 H 1.08001 * 120.03580 * 0.02562 * 10 9 7 33 33 H 1.07997 * 119.80286 * 180.02562 * 11 10 9 34 34 H 1.08001 * 119.77650 * 179.71374 * 12 11 10 35 35 H 1.08003 * 119.97509 * 180.02562 * 13 12 11 36 36 H 0.97006 * 119.99620 * 180.02562 * 19 18 16 37 37 H 1.07999 * 125.89544 * 179.73358 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 -0.0006 5 6 4.7680 1.5454 -0.0002 6 8 5.1615 1.8267 1.3688 7 6 6.2474 2.6053 1.5456 8 8 6.8486 3.0377 0.5820 9 6 6.7054 2.9322 2.9068 10 6 6.0172 2.4379 4.0181 11 6 6.4506 2.7479 5.2887 12 6 7.5672 3.5492 5.4732 13 6 8.2583 4.0455 4.3879 14 6 7.8371 3.7444 3.0966 15 16 8.7170 4.3771 1.7073 16 6 10.0947 5.1100 2.5255 17 1 10.2196 4.9842 3.5909 18 6 11.0195 5.8493 1.8009 19 7 10.8675 6.0023 0.5032 20 14 12.4804 6.6257 2.6682 21 1 13.6181 5.6714 2.6724 22 1 12.8775 7.8663 1.9550 23 1 12.1069 6.9569 4.0668 24 6 3.5347 -0.7320 -0.0071 25 7 2.2892 -1.1327 -0.0007 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5139 29 1 1.9281 2.1193 0.0004 30 1 4.5441 2.4806 -0.5134 31 1 5.5820 1.0346 -0.5147 32 1 5.1466 1.8137 3.8811 33 1 5.9175 2.3645 6.1461 34 1 7.8955 3.7897 6.4736 35 1 9.1272 4.6686 4.5404 36 1 11.5139 6.5187 -0.0033 37 1 4.4054 -1.3709 -0.0132 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078341643.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:37 Heat of formation + Delta-G solvation = 6.735789 kcal Electronic energy + Delta-G solvation = -22655.396196 eV Core-core repulsion = 19104.429332 eV Total energy + Delta-G solvation = -3550.966863 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.23402 -41.26859 -39.32022 -37.33903 -34.77309 -34.35998 -32.60503 -31.87321 -31.78941 -28.74561 -27.84949 -26.42964 -24.80030 -23.45836 -22.08430 -22.02714 -21.33918 -19.89849 -18.80874 -18.20638 -17.68401 -17.22948 -17.14068 -16.86398 -16.32516 -15.74827 -15.65244 -15.38191 -15.08815 -14.70574 -14.63580 -14.37185 -13.82299 -13.78265 -13.47198 -13.36573 -13.28059 -12.97944 -12.93841 -12.91232 -12.52637 -12.04704 -11.92243 -11.74138 -11.45061 -11.43558 -11.34000 -10.44378 -10.42834 -10.10389 -9.87748 -9.55741 -8.51581 -8.46520 -6.26369 -0.11488 0.52848 0.80749 1.27312 1.34698 1.38538 1.46569 1.60588 1.64839 1.73565 2.17683 2.29111 2.85886 2.98970 3.21336 3.54489 3.86882 3.96670 4.10410 4.13913 4.26378 4.30146 4.35473 4.46297 4.52100 4.63809 4.68106 4.72182 4.79369 4.81385 5.04778 5.11804 5.37653 5.43434 5.48080 5.55194 5.60216 5.66529 6.04578 6.08853 6.15594 6.63320 6.94999 6.96007 8.59514 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.021724 B = 0.002937 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.616743 B = 9532.231451 C =10528.618359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.376 5.376 3 C 0.094 3.906 4 C -0.267 4.267 5 C 0.148 3.852 6 O -0.349 6.349 7 C 0.498 3.502 8 O -0.519 6.519 9 C -0.173 4.173 10 C -0.035 4.035 11 C -0.162 4.162 12 C -0.057 4.057 13 C -0.175 4.175 14 C -0.065 4.065 15 S 0.070 5.930 16 C -0.601 4.601 17 H 0.098 0.902 18 C 0.026 3.974 19 N -0.904 5.904 20 Si 0.994 3.006 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.256 1.256 24 C 0.062 3.938 25 N -0.329 5.329 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.116 0.884 29 H 0.208 0.792 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.153 0.847 33 H 0.165 0.835 34 H 0.155 0.845 35 H 0.126 0.874 36 H 0.277 0.723 37 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.374 -9.378 4.990 22.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.157 5.157 3 C -0.055 4.055 4 C -0.278 4.278 5 C 0.074 3.926 6 O -0.266 6.266 7 C 0.344 3.656 8 O -0.411 6.411 9 C -0.185 4.185 10 C -0.054 4.054 11 C -0.185 4.185 12 C -0.078 4.078 13 C -0.200 4.200 14 C -0.183 4.183 15 S 0.330 5.670 16 C -0.747 4.747 17 H 0.116 0.884 18 C -0.180 4.180 19 N -0.538 5.538 20 Si 0.815 3.185 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.180 1.180 24 C -0.124 4.124 25 N -0.151 5.151 26 H 0.107 0.893 27 H 0.111 0.889 28 H 0.134 0.866 29 H 0.225 0.775 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.171 0.829 33 H 0.183 0.817 34 H 0.173 0.827 35 H 0.144 0.856 36 H 0.086 0.914 37 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -20.181 -10.108 3.066 22.778 hybrid contribution 1.997 1.329 0.947 2.579 sum -18.184 -8.779 4.013 20.587 Atomic orbital electron populations 1.22271 0.71460 1.06222 1.04887 1.48893 1.08210 1.03219 1.55365 1.22878 0.90135 0.94863 0.97638 1.19677 0.93655 0.93765 1.20743 1.21001 0.93865 0.98183 0.79529 1.86592 1.43332 1.63465 1.33232 1.21294 0.78390 0.75951 0.89935 1.90846 1.55442 1.51668 1.43108 1.18685 1.00482 1.08152 0.91139 1.21495 0.97537 0.95261 0.91138 1.21349 0.98337 1.01511 0.97313 1.21615 0.93776 0.93733 0.98687 1.21455 1.02809 1.04331 0.91436 1.22973 0.97165 0.97858 1.00317 1.84832 1.18530 1.58310 1.05316 1.24224 1.12209 1.39285 0.98995 0.88433 1.26152 1.01245 0.95122 0.95516 1.70119 1.37176 1.38645 1.07889 0.85020 0.76975 0.77724 0.78777 1.19186 1.19859 1.17966 1.24117 0.95722 0.94660 0.97859 1.77335 1.01993 1.09610 1.26132 0.89259 0.88881 0.86563 0.77491 0.90556 0.91004 0.82889 0.81722 0.82710 0.85645 0.91410 0.78668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.72 11.47 127.77 1.47 2.18 16 2 N -0.38 -6.72 4.01 -369.56 -1.48 -8.21 16 3 C 0.09 1.69 11.40 83.54 0.95 2.64 16 4 C -0.27 -6.18 5.74 -20.14 -0.12 -6.30 16 5 C 0.15 4.10 5.95 71.24 0.42 4.53 16 6 O -0.35 -11.39 9.45 -56.99 -0.54 -11.93 16 7 C 0.50 20.28 7.87 70.20 0.55 20.83 16 8 O -0.52 -25.01 13.57 19.74 0.27 -24.74 16 9 C -0.17 -6.94 5.89 -19.96 -0.12 -7.06 16 10 C -0.03 -1.05 9.61 22.53 0.22 -0.84 16 11 C -0.16 -4.19 10.02 22.27 0.22 -3.96 16 12 C -0.06 -1.69 10.03 22.30 0.22 -1.47 16 13 C -0.18 -7.12 9.22 22.40 0.21 -6.91 16 14 C -0.07 -3.03 6.15 23.06 0.14 -2.89 16 15 S 0.07 3.98 18.56 -56.49 -1.05 2.93 16 16 C -0.60 -34.23 9.00 67.96 0.61 -33.62 16 17 H 0.10 5.21 4.98 -2.91 -0.01 5.19 16 18 C 0.03 1.44 5.49 84.87 0.47 1.90 16 19 N -0.90 -54.25 13.22 21.65 0.29 -53.96 16 20 Si 0.99 42.95 29.55 68.60 2.03 44.98 16 21 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 22 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 23 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 24 C 0.06 1.44 11.96 85.24 1.02 2.46 16 25 N -0.33 -7.79 12.58 -57.02 -0.72 -8.50 16 26 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.21 2.27 8.06 -2.91 -0.02 2.24 16 30 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.15 3.77 7.61 -2.91 -0.02 3.74 16 33 H 0.17 2.77 8.06 -2.91 -0.02 2.74 16 34 H 0.16 3.38 8.06 -2.91 -0.02 3.35 16 35 H 0.13 5.43 5.04 -2.91 -0.01 5.41 16 36 H 0.28 15.32 8.31 -92.70 -0.77 14.55 16 37 H 0.20 3.75 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -78.51 340.94 6.17 -72.34 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 1.11 Total: 15.61 kcal Atomic # 6 Polarization: -34.78 SS G_CDS: 6.27 Total: -28.51 kcal Atomic # 7 Polarization: -68.76 SS G_CDS: -1.91 Total: -70.67 kcal Atomic # 8 Polarization: -36.40 SS G_CDS: -0.27 Total: -36.67 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: 3.98 SS G_CDS: -1.05 Total: 2.93 kcal Total: -78.51 6.17 -72.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078341643.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.078 kcal (2) G-P(sol) polarization free energy of solvation -78.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds