Wall clock time and date at job start Tue Mar 31 2020 11:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33443 * 122.71594 * 2 1 4 4 S 1.76178 * 108.06028 * 179.72170 * 3 2 1 5 5 C 1.70968 * 90.33900 * 0.32880 * 4 3 2 6 6 N 1.39000 * 124.94307 * 179.97438 * 5 4 3 7 7 C 1.34780 * 119.99856 * 359.69875 * 6 5 4 8 8 O 1.21277 * 119.99828 * 359.97438 * 7 6 5 9 9 C 1.50705 * 119.99681 * 179.97438 * 7 6 5 10 10 C 1.50698 * 109.46946 * 179.97438 * 9 7 6 11 11 C 1.38299 * 119.93062 * 269.73177 * 10 9 7 12 12 C 1.38104 * 120.06808 * 179.72620 * 11 10 9 13 13 C 1.38884 * 119.92949 * 0.56361 * 12 11 10 14 14 O 1.35747 * 120.06670 * 179.68424 * 13 12 11 15 15 C 1.34830 * 116.99703 * 174.48844 * 14 13 12 16 16 H 1.08000 * 120.00274 * 5.05760 * 15 14 13 17 17 C 1.38659 * 119.99992 * 185.05449 * 15 14 13 18 18 N 1.31557 * 119.99782 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 119.99947 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.47046 * 89.99738 * 19 17 15 21 21 H 1.48492 * 109.47302 * 209.99708 * 19 17 15 22 22 H 1.48506 * 109.47183 * 329.99982 * 19 17 15 23 23 C 1.38875 * 119.85840 * 359.70732 * 13 12 11 24 24 C 1.38094 * 119.93651 * 0.02562 * 23 13 12 25 25 N 1.29623 * 110.11029 * 359.66531 * 5 4 3 26 26 H 1.08998 * 109.47192 * 270.00243 * 1 2 3 27 27 H 1.09001 * 109.47145 * 30.00290 * 1 2 3 28 28 H 1.08994 * 109.47285 * 149.99728 * 1 2 3 29 29 H 1.08005 * 125.97100 * 359.95651 * 3 2 1 30 30 H 0.97004 * 120.00343 * 179.69396 * 6 5 4 31 31 H 1.09000 * 109.47038 * 60.00099 * 9 7 6 32 32 H 1.08994 * 109.47136 * 300.00342 * 9 7 6 33 33 H 1.07995 * 119.96585 * 359.97438 * 11 10 9 34 34 H 1.08003 * 120.03457 * 180.27214 * 12 11 10 35 35 H 0.97003 * 119.99635 * 179.97438 * 18 17 15 36 36 H 1.08008 * 120.03256 * 179.97438 * 23 13 12 37 37 H 1.07995 * 119.96949 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2282 1.1227 0.0000 4 16 3.9327 0.6770 0.0081 5 6 3.5099 -0.9796 0.0009 6 7 4.4171 -2.0327 0.0024 7 6 5.7413 -1.7815 0.0038 8 8 6.1412 -0.6366 0.0033 9 6 6.7248 -2.9234 0.0059 10 6 8.1291 -2.3767 0.0065 11 6 8.7753 -2.1330 -1.1917 12 6 10.0601 -1.6267 -1.1945 13 6 10.7077 -1.3734 0.0077 14 8 11.9731 -0.8817 0.0082 15 6 12.5008 -0.5512 1.2040 16 1 11.9530 -0.7576 2.1117 17 6 13.7468 0.0537 1.2686 18 7 14.2615 0.3767 2.4355 19 14 14.6939 0.4112 -0.3011 20 1 14.3378 1.7651 -0.7967 21 1 16.1516 0.3533 -0.0239 22 1 14.3453 -0.6004 -1.3310 23 6 10.0582 -1.6245 1.2092 24 6 8.7714 -2.1255 1.2054 25 7 2.2203 -1.1105 0.0005 26 1 -0.3633 0.0000 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8899 -0.5138 29 1 1.8357 2.1289 -0.0007 30 1 4.0972 -2.9485 0.0025 31 1 6.5737 -3.5347 -0.8838 32 1 6.5715 -3.5333 0.8961 33 1 8.2730 -2.3350 -2.1262 34 1 10.5626 -1.4324 -2.1306 35 1 15.1333 0.7995 2.4807 36 1 10.5593 -1.4289 2.1458 37 1 8.2656 -2.3206 2.1394 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110159983.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:59 Heat of formation + Delta-G solvation = 12.935358 kcal Electronic energy + Delta-G solvation = -22500.510572 eV Core-core repulsion = 18949.812542 eV Total energy + Delta-G solvation = -3550.698030 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.71430 -39.68035 -39.03851 -36.81677 -35.21784 -32.61553 -32.00649 -31.12737 -30.29666 -27.80660 -27.21815 -25.22497 -24.06257 -22.17146 -21.80798 -20.76297 -19.74980 -18.30551 -17.93301 -17.34072 -17.06742 -16.75734 -16.09818 -15.05823 -14.97270 -14.59568 -14.43374 -14.12960 -14.02122 -13.78817 -13.58636 -13.21392 -13.07913 -12.76515 -12.71962 -12.57275 -12.23719 -11.84128 -11.60502 -11.31155 -11.04677 -10.97365 -10.79371 -10.72256 -10.18307 -10.06419 -9.88299 -9.42034 -9.29987 -8.89162 -8.37761 -8.29530 -7.38153 -6.44202 -4.10745 0.62432 1.04770 1.79077 1.99590 2.10372 2.13393 2.56148 2.80172 3.20760 3.24983 3.38769 4.21766 4.24034 4.37626 4.66364 4.81788 5.00303 5.02353 5.05251 5.09716 5.14764 5.33982 5.42731 5.46783 5.54532 5.57996 5.68011 5.73806 6.08460 6.11073 6.26856 6.49854 6.68285 6.74685 6.97737 7.14461 7.24981 7.56316 7.61735 7.67326 7.77009 8.00613 8.90791 9.52428 10.63228 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.026920 B = 0.002473 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.875235 B =11320.377574 C =11730.832159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.087 3.913 3 C -0.329 4.329 4 S 0.248 5.752 5 C 0.246 3.754 6 N -0.630 5.630 7 C 0.506 3.494 8 O -0.481 6.481 9 C -0.070 4.070 10 C -0.172 4.172 11 C -0.058 4.058 12 C -0.191 4.191 13 C 0.165 3.835 14 O -0.215 6.215 15 C -0.390 4.390 16 H 0.107 0.893 17 C 0.063 3.937 18 N -0.878 5.878 19 Si 0.906 3.094 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.259 1.259 23 C -0.220 4.220 24 C -0.054 4.054 25 N -0.520 5.520 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.173 0.827 30 H 0.422 0.578 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.111 0.889 34 H 0.118 0.882 35 H 0.280 0.720 36 H 0.134 0.866 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.314 -4.540 -5.403 24.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.046 4.046 3 C -0.469 4.469 4 S 0.498 5.502 5 C -0.121 4.121 6 N -0.281 5.281 7 C 0.293 3.707 8 O -0.352 6.352 9 C -0.110 4.110 10 C -0.174 4.174 11 C -0.077 4.077 12 C -0.211 4.211 13 C 0.112 3.888 14 O -0.120 6.120 15 C -0.465 4.465 16 H 0.124 0.876 17 C -0.140 4.140 18 N -0.515 5.515 19 Si 0.731 3.269 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.183 1.183 23 C -0.239 4.239 24 C -0.073 4.073 25 N -0.244 5.244 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.190 0.810 30 H 0.260 0.740 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.129 0.871 34 H 0.136 0.864 35 H 0.090 0.910 36 H 0.151 0.849 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -21.782 -3.608 -5.448 22.741 hybrid contribution -0.710 -0.284 -0.336 0.836 sum -22.492 -3.892 -5.784 23.548 Atomic orbital electron populations 1.20330 0.87371 1.03096 1.02763 1.19788 0.97561 0.86077 1.01139 1.27255 0.99055 1.03796 1.16790 1.85234 1.01754 0.96031 1.67184 1.23526 0.90541 0.95024 1.02971 1.43158 1.04741 1.08276 1.71957 1.21729 0.80978 0.92769 0.75206 1.90701 1.76623 1.22498 1.45363 1.20376 0.91087 0.94479 1.05031 1.18604 0.93881 1.10960 0.93932 1.20405 0.93710 0.97195 0.96352 1.20156 0.95784 1.09060 0.96054 1.19143 0.84427 0.91780 0.93410 1.83571 1.23306 1.71179 1.33918 1.20780 1.02965 1.39947 0.82831 0.87557 1.24481 0.96071 0.95287 0.98177 1.69647 1.18430 1.39762 1.23683 0.86174 0.78284 0.79733 0.82679 1.19830 1.20759 1.18346 1.21226 0.96301 1.07613 0.98754 1.20571 0.94086 0.96359 0.96252 1.66163 1.02418 1.32735 1.23126 0.90811 0.90784 0.90847 0.80978 0.73984 0.87864 0.87839 0.87074 0.86438 0.91002 0.84861 0.87402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.31 36.01 0.37 -0.20 16 2 C 0.09 0.95 6.74 -84.20 -0.57 0.39 16 3 C -0.33 -3.45 11.11 29.06 0.32 -3.13 16 4 S 0.25 3.12 20.22 -107.50 -2.17 0.94 16 5 C 0.25 3.07 8.19 -87.35 -0.72 2.36 16 6 N -0.63 -6.49 5.40 -13.07 -0.07 -6.56 16 7 C 0.51 6.14 7.78 -10.98 -0.09 6.05 16 8 O -0.48 -7.76 13.50 5.56 0.08 -7.68 16 9 C -0.07 -0.72 5.83 -29.03 -0.17 -0.89 16 10 C -0.17 -2.64 4.38 -104.58 -0.46 -3.09 16 11 C -0.06 -0.95 9.69 -39.61 -0.38 -1.33 16 12 C -0.19 -3.72 9.99 -39.39 -0.39 -4.12 16 13 C 0.16 3.77 6.65 -39.11 -0.26 3.51 16 14 O -0.22 -5.65 8.59 0.06 0.00 -5.64 16 15 C -0.39 -10.93 9.95 30.89 0.31 -10.62 16 16 H 0.11 3.04 5.44 -52.49 -0.29 2.75 16 17 C 0.06 1.77 5.49 -17.51 -0.10 1.68 16 18 N -0.88 -25.25 13.96 55.48 0.77 -24.48 16 19 Si 0.91 21.60 28.62 -169.99 -4.86 16.74 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.26 -6.18 7.11 56.52 0.40 -5.78 16 23 C -0.22 -4.67 9.17 -39.40 -0.36 -5.03 16 24 C -0.05 -0.94 9.69 -39.61 -0.38 -1.33 16 25 N -0.52 -6.49 10.58 -11.28 -0.12 -6.61 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.42 8.12 -51.93 -0.42 -0.01 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.17 1.36 8.06 -52.48 -0.42 0.93 16 30 H 0.42 2.97 8.82 -40.82 -0.36 2.61 16 31 H 0.10 0.76 8.08 -51.93 -0.42 0.34 16 32 H 0.10 0.80 8.08 -51.93 -0.42 0.38 16 33 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.12 2.13 8.06 -52.48 -0.42 1.71 16 35 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.13 2.98 5.64 -52.48 -0.30 2.69 16 37 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 338.16 15.07 5.10 5.10 Total: -1.00 -32.89 338.16 -8.03 -40.92 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -3.87 Total: 3.03 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -2.87 Total: -15.76 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.58 Total: -37.65 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.08 Total: -13.33 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.86 Total: 16.74 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -2.17 Total: 0.94 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.89 -8.03 -40.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110159983.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.857 kcal (2) G-P(sol) polarization free energy of solvation -32.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds