Wall clock time and date at job start Tue Mar 31 2020 11:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33443 * 122.71594 * 2 1 4 4 S 1.76178 * 108.06028 * 179.72170 * 3 2 1 5 5 C 1.70968 * 90.33900 * 0.32880 * 4 3 2 6 6 N 1.39000 * 124.94307 * 179.97438 * 5 4 3 7 7 C 1.34780 * 119.99856 * 359.69875 * 6 5 4 8 8 O 1.21277 * 119.99828 * 359.97438 * 7 6 5 9 9 C 1.50705 * 119.99681 * 179.97438 * 7 6 5 10 10 C 1.50698 * 109.46946 * 179.97438 * 9 7 6 11 11 C 1.38299 * 119.93062 * 269.73177 * 10 9 7 12 12 C 1.38104 * 120.06808 * 179.72620 * 11 10 9 13 13 C 1.38884 * 119.92949 * 0.56361 * 12 11 10 14 14 O 1.35747 * 120.06670 * 179.68424 * 13 12 11 15 15 C 1.34830 * 116.99703 * 174.48844 * 14 13 12 16 16 H 1.08000 * 120.00274 * 5.05760 * 15 14 13 17 17 C 1.38659 * 119.99992 * 185.05449 * 15 14 13 18 18 N 1.31557 * 119.99782 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 119.99947 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.47046 * 89.99738 * 19 17 15 21 21 H 1.48492 * 109.47302 * 209.99708 * 19 17 15 22 22 H 1.48506 * 109.47183 * 329.99982 * 19 17 15 23 23 C 1.38875 * 119.85840 * 359.70732 * 13 12 11 24 24 C 1.38094 * 119.93651 * 0.02562 * 23 13 12 25 25 N 1.29623 * 110.11029 * 359.66531 * 5 4 3 26 26 H 1.08998 * 109.47192 * 270.00243 * 1 2 3 27 27 H 1.09001 * 109.47145 * 30.00290 * 1 2 3 28 28 H 1.08994 * 109.47285 * 149.99728 * 1 2 3 29 29 H 1.08005 * 125.97100 * 359.95651 * 3 2 1 30 30 H 0.97004 * 120.00343 * 179.69396 * 6 5 4 31 31 H 1.09000 * 109.47038 * 60.00099 * 9 7 6 32 32 H 1.08994 * 109.47136 * 300.00342 * 9 7 6 33 33 H 1.07995 * 119.96585 * 359.97438 * 11 10 9 34 34 H 1.08003 * 120.03457 * 180.27214 * 12 11 10 35 35 H 0.97003 * 119.99635 * 179.97438 * 18 17 15 36 36 H 1.08008 * 120.03256 * 179.97438 * 23 13 12 37 37 H 1.07995 * 119.96949 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2282 1.1227 0.0000 4 16 3.9327 0.6770 0.0081 5 6 3.5099 -0.9796 0.0009 6 7 4.4171 -2.0327 0.0024 7 6 5.7413 -1.7815 0.0038 8 8 6.1412 -0.6366 0.0033 9 6 6.7248 -2.9234 0.0059 10 6 8.1291 -2.3767 0.0065 11 6 8.7753 -2.1330 -1.1917 12 6 10.0601 -1.6267 -1.1945 13 6 10.7077 -1.3734 0.0077 14 8 11.9731 -0.8817 0.0082 15 6 12.5008 -0.5512 1.2040 16 1 11.9530 -0.7576 2.1117 17 6 13.7468 0.0537 1.2686 18 7 14.2615 0.3767 2.4355 19 14 14.6939 0.4112 -0.3011 20 1 14.3378 1.7651 -0.7967 21 1 16.1516 0.3533 -0.0239 22 1 14.3453 -0.6004 -1.3310 23 6 10.0582 -1.6245 1.2092 24 6 8.7714 -2.1255 1.2054 25 7 2.2203 -1.1105 0.0005 26 1 -0.3633 0.0000 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8899 -0.5138 29 1 1.8357 2.1289 -0.0007 30 1 4.0972 -2.9485 0.0025 31 1 6.5737 -3.5347 -0.8838 32 1 6.5715 -3.5333 0.8961 33 1 8.2730 -2.3350 -2.1262 34 1 10.5626 -1.4324 -2.1306 35 1 15.1333 0.7995 2.4807 36 1 10.5593 -1.4289 2.1458 37 1 8.2656 -2.3206 2.1394 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110159983.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:58 Heat of formation + Delta-G solvation = -8.736170 kcal Electronic energy + Delta-G solvation = -22501.450320 eV Core-core repulsion = 18949.812542 eV Total energy + Delta-G solvation = -3551.637778 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.68535 -40.86695 -40.37765 -38.38985 -36.15595 -34.53203 -33.26016 -32.04686 -31.79666 -28.78128 -28.36063 -26.99308 -25.08103 -23.71260 -22.86238 -22.03194 -20.72023 -19.81983 -19.21235 -19.09174 -17.97215 -17.66629 -17.08816 -16.62463 -16.30221 -15.84987 -15.66658 -15.49575 -15.43740 -15.06904 -14.93297 -14.37106 -14.23965 -14.07920 -14.03400 -13.64083 -13.30706 -13.06603 -12.89157 -12.58931 -12.45263 -12.36169 -12.29966 -11.93686 -11.82845 -11.27891 -11.06428 -10.88950 -10.79169 -10.22659 -9.78279 -9.23497 -9.01007 -8.50751 -6.23229 -0.26091 0.16491 0.56629 0.59580 0.95387 1.24950 1.30431 1.34589 1.50991 1.61629 1.93899 2.27410 2.76028 3.03908 3.16883 3.51863 3.69209 4.00542 4.03387 4.16988 4.33652 4.43397 4.43885 4.57295 4.65227 4.75391 4.81188 4.82151 4.90136 4.97219 5.01183 5.25374 5.36604 5.40356 5.56188 5.72372 5.79825 5.89880 5.95328 6.25506 6.76187 6.79991 6.83592 7.58341 8.60914 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.026920 B = 0.002473 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.875235 B =11320.377574 C =11730.832159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.070 3.930 3 C -0.318 4.318 4 S 0.199 5.801 5 C 0.237 3.763 6 N -0.614 5.614 7 C 0.511 3.489 8 O -0.527 6.527 9 C -0.066 4.066 10 C -0.144 4.144 11 C -0.054 4.054 12 C -0.195 4.195 13 C 0.120 3.880 14 O -0.246 6.246 15 C -0.399 4.399 16 H 0.080 0.920 17 C 0.008 3.992 18 N -0.923 5.923 19 Si 0.972 3.028 20 H -0.268 1.268 21 H -0.266 1.266 22 H -0.262 1.262 23 C -0.240 4.240 24 C -0.060 4.060 25 N -0.528 5.528 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.074 0.926 29 H 0.197 0.803 30 H 0.439 0.561 31 H 0.149 0.851 32 H 0.140 0.860 33 H 0.156 0.844 34 H 0.127 0.873 35 H 0.285 0.715 36 H 0.105 0.895 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.790 -6.119 -7.411 28.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.061 4.061 3 C -0.458 4.458 4 S 0.449 5.551 5 C -0.130 4.130 6 N -0.266 5.266 7 C 0.299 3.701 8 O -0.402 6.402 9 C -0.105 4.105 10 C -0.145 4.145 11 C -0.072 4.072 12 C -0.214 4.214 13 C 0.071 3.929 14 O -0.153 6.153 15 C -0.475 4.475 16 H 0.098 0.902 17 C -0.190 4.190 18 N -0.564 5.564 19 Si 0.794 3.206 20 H -0.193 1.193 21 H -0.191 1.191 22 H -0.186 1.186 23 C -0.259 4.259 24 C -0.078 4.078 25 N -0.253 5.253 26 H 0.102 0.898 27 H 0.112 0.888 28 H 0.093 0.907 29 H 0.214 0.786 30 H 0.280 0.720 31 H 0.167 0.833 32 H 0.158 0.842 33 H 0.174 0.826 34 H 0.145 0.855 35 H 0.094 0.906 36 H 0.123 0.877 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -25.341 -5.244 -7.462 26.932 hybrid contribution -0.100 0.066 0.265 0.291 sum -25.441 -5.178 -7.197 26.942 Atomic orbital electron populations 1.20440 0.84920 1.04199 1.03739 1.20405 0.99181 0.85763 1.00755 1.27481 0.97387 1.04980 1.15937 1.85416 1.04075 0.97489 1.68105 1.23681 0.90806 0.95130 1.03399 1.42957 1.03954 1.08717 1.70998 1.21922 0.81565 0.92364 0.74262 1.90726 1.77445 1.24367 1.47626 1.20528 0.86671 0.94118 1.09152 1.19185 0.96029 1.06717 0.92536 1.20967 0.92280 0.95205 0.98721 1.20516 0.97079 1.08662 0.95132 1.19727 0.84220 0.93543 0.95379 1.83511 1.25397 1.73998 1.32443 1.20705 1.03321 1.40371 0.83119 0.90231 1.25304 0.96962 0.95329 1.01422 1.69733 1.19322 1.41831 1.25532 0.85205 0.77518 0.79372 0.78536 1.19286 1.19052 1.18584 1.21250 0.98181 1.09122 0.97362 1.20927 0.92567 0.95498 0.98764 1.66234 1.02390 1.33460 1.23172 0.89810 0.88757 0.90717 0.78587 0.71963 0.83347 0.84192 0.82619 0.85488 0.90579 0.87681 0.84690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.88 10.31 71.24 0.73 -0.15 16 2 C 0.07 1.38 6.74 41.45 0.28 1.66 16 3 C -0.32 -6.06 11.11 66.73 0.74 -5.32 16 4 S 0.20 4.82 20.22 -56.49 -1.14 3.68 16 5 C 0.24 5.39 8.19 179.21 1.47 6.86 16 6 N -0.61 -10.47 5.40 -313.64 -1.69 -12.17 16 7 C 0.51 10.46 7.78 87.66 0.68 11.14 16 8 O -0.53 -15.93 13.50 -3.02 -0.04 -15.97 16 9 C -0.07 -0.97 5.83 29.10 0.17 -0.80 16 10 C -0.14 -3.85 4.38 -19.83 -0.09 -3.94 16 11 C -0.05 -1.56 9.69 22.25 0.22 -1.34 16 12 C -0.19 -7.41 9.99 22.39 0.22 -7.19 16 13 C 0.12 5.70 6.65 22.58 0.15 5.85 16 14 O -0.25 -13.61 8.59 -22.71 -0.19 -13.80 16 15 C -0.40 -23.95 9.95 67.92 0.68 -23.27 16 16 H 0.08 5.01 5.44 -2.91 -0.02 5.00 16 17 C 0.01 0.47 5.49 84.83 0.47 0.94 16 18 N -0.92 -55.96 13.96 21.61 0.30 -55.66 16 19 Si 0.97 46.16 28.62 68.60 1.96 48.12 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 22 H -0.26 -12.34 7.11 99.48 0.71 -11.63 16 23 C -0.24 -10.63 9.17 22.39 0.21 -10.42 16 24 C -0.06 -1.99 9.69 22.25 0.22 -1.77 16 25 N -0.53 -11.92 10.58 -189.59 -2.01 -13.93 16 26 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.09 0.74 8.12 -2.39 -0.02 0.72 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.20 2.59 8.06 -2.91 -0.02 2.57 16 30 H 0.44 4.25 8.82 -92.71 -0.82 3.43 16 31 H 0.15 1.04 8.08 -2.39 -0.02 1.02 16 32 H 0.14 1.23 8.08 -2.39 -0.02 1.21 16 33 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 34 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 35 H 0.28 15.79 8.31 -92.71 -0.77 15.02 16 36 H 0.11 5.17 5.64 -2.91 -0.02 5.15 16 37 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -78.29 338.16 3.64 -74.65 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.31 Total: 12.84 kcal Atomic # 6 Polarization: -33.89 SS G_CDS: 6.14 Total: -27.75 kcal Atomic # 7 Polarization: -78.35 SS G_CDS: -3.40 Total: -81.75 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -0.24 Total: -29.78 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.96 Total: 48.12 kcal Atomic # 16 Polarization: 4.82 SS G_CDS: -1.14 Total: 3.68 kcal Total: -78.29 3.64 -74.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110159983.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.914 kcal (2) G-P(sol) polarization free energy of solvation -78.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds