Wall clock time and date at job start Tue Mar 31 2020 11:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35094 * 126.40824 * 2 1 4 4 Cl 1.73602 * 125.65075 * 0.03895 * 3 2 1 5 5 N 1.30635 * 108.69433 * 180.25387 * 3 2 1 6 6 C 1.34227 * 109.28441 * 359.76400 * 5 3 2 7 7 Cl 1.73596 * 125.98417 * 179.97438 * 6 5 3 8 8 C 1.34692 * 108.03286 * 0.02562 * 6 5 3 9 9 C 1.50694 * 126.59817 * 179.97438 * 8 6 5 10 10 N 1.46898 * 109.47313 * 270.02241 * 9 8 6 11 11 C 1.46903 * 111.00133 * 169.99897 * 10 9 8 12 12 C 1.53230 * 109.33899 * 187.25239 * 11 10 9 13 13 N 1.47080 * 108.52531 * 306.16795 * 12 11 10 14 14 C 1.36931 * 120.88364 * 231.18821 * 13 12 11 15 15 H 1.07994 * 120.00368 * 26.84029 * 14 13 12 16 16 C 1.38812 * 119.99721 * 206.56279 * 14 13 12 17 17 N 1.31619 * 120.00606 * 17.47328 * 16 14 13 18 18 Si 1.86807 * 119.99780 * 197.47555 * 16 14 13 19 19 H 1.48504 * 109.46947 * 94.38387 * 18 16 14 20 20 H 1.48508 * 109.46899 * 214.38152 * 18 16 14 21 21 H 1.48495 * 109.47303 * 334.38014 * 18 16 14 22 22 C 1.47082 * 118.23403 * 51.45931 * 13 12 11 23 23 C 1.46904 * 110.99940 * 294.30236 * 10 9 8 24 24 H 1.08997 * 109.47152 * 270.14101 * 1 2 3 25 25 H 1.08999 * 109.47324 * 30.13845 * 1 2 3 26 26 H 1.08998 * 109.46794 * 150.14150 * 1 2 3 27 27 H 1.09000 * 109.47047 * 150.01792 * 9 8 6 28 28 H 1.09005 * 109.47236 * 30.02355 * 9 8 6 29 29 H 1.09001 * 109.49186 * 67.29185 * 11 10 9 30 30 H 1.08999 * 109.49207 * 307.21639 * 11 10 9 31 31 H 1.09004 * 109.63143 * 186.45915 * 12 11 10 32 32 H 1.09004 * 109.63158 * 65.88032 * 12 11 10 33 33 H 0.96993 * 120.00972 * 179.97438 * 17 16 14 34 34 H 1.09000 * 109.63087 * 68.24805 * 22 13 12 35 35 H 1.08996 * 109.63194 * 188.83501 * 22 13 12 36 36 H 1.09005 * 109.48966 * 292.70358 * 23 10 9 37 37 H 1.08993 * 109.49068 * 52.75434 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2668 1.0872 0.0000 4 17 1.7320 2.7389 0.0010 5 7 3.5112 0.6898 -0.0055 6 6 3.5480 -0.6520 -0.0039 7 17 4.9801 -1.6331 -0.0102 8 6 2.2792 -1.1039 0.0022 9 6 1.8387 -2.5450 0.0054 10 7 1.6899 -3.0147 -1.3785 11 6 1.4940 -4.4700 -1.4223 12 6 1.5246 -4.9424 -2.8797 13 7 0.5429 -4.1594 -3.6455 14 6 -0.3899 -4.7792 -4.4333 15 1 -0.7155 -5.7816 -4.1978 16 6 -0.9214 -4.1169 -5.5313 17 7 -0.3085 -3.0610 -6.0232 18 14 -2.5066 -4.7242 -6.3110 19 1 -3.6571 -3.9816 -5.7363 20 1 -2.4549 -4.4985 -7.7780 21 1 -2.6681 -6.1750 -6.0388 22 6 0.5936 -2.6927 -3.5474 23 6 0.5959 -2.3090 -2.0591 24 1 -0.3633 0.0025 1.0276 25 1 -0.3634 0.8887 -0.5160 26 1 -0.3633 -0.8912 -0.5116 27 1 0.8836 -2.6319 0.5234 28 1 2.5858 -3.1522 0.5168 29 1 0.5304 -4.7208 -0.9788 30 1 2.2907 -4.9612 -0.8638 31 1 1.2664 -6.0003 -2.9272 32 1 2.5207 -4.7867 -3.2942 33 1 -0.6797 -2.5984 -6.7907 34 1 1.5019 -2.3250 -4.0247 35 1 -0.2803 -2.2625 -4.0364 36 1 -0.3552 -2.5899 -1.6067 37 1 0.7412 -1.2331 -1.9619 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129935822.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:47 Heat of formation + Delta-G solvation = 75.541100 kcal Electronic energy + Delta-G solvation = -22881.323790 eV Core-core repulsion = 19361.156744 eV Total energy + Delta-G solvation = -3520.167046 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 318.071 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.47545 -39.67354 -38.14906 -37.59009 -36.42179 -35.20711 -33.49846 -31.69003 -31.42150 -28.52175 -28.12317 -26.17311 -24.39559 -24.11828 -22.81000 -21.35658 -20.79399 -18.77659 -18.60242 -17.65795 -16.87542 -16.47660 -16.30654 -16.02832 -15.82251 -15.35921 -15.31338 -14.90608 -14.75352 -14.40269 -13.97515 -13.72960 -13.37707 -13.25994 -13.06763 -12.95059 -12.74352 -12.60323 -12.38968 -12.33734 -12.20889 -12.03672 -11.89288 -11.62277 -11.47836 -11.30376 -10.81789 -10.59402 -9.47781 -9.27092 -8.68465 -7.87444 -5.32249 0.07575 0.48404 0.81624 1.47164 1.48356 1.51723 1.57914 1.91344 2.51128 3.00586 3.27757 3.38347 3.67014 3.69569 3.74441 4.15981 4.24168 4.31556 4.38396 4.40018 4.47707 4.58860 4.62843 4.72463 4.82867 4.88475 4.96764 5.04147 5.18917 5.36499 5.56256 5.62320 5.65712 6.11791 6.15952 6.36983 6.40301 7.13077 7.84038 8.38305 9.19369 Molecular weight = 318.07amu Principal moments of inertia in cm(-1) A = 0.015742 B = 0.004092 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.246057 B = 6841.715744 C = 7934.544137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.433 5.433 3 C 0.251 3.749 4 Cl 0.061 6.939 5 N -0.491 5.491 6 C 0.055 3.945 7 Cl 0.004 6.996 8 C 0.033 3.967 9 C 0.132 3.868 10 N -0.540 5.540 11 C 0.059 3.941 12 C 0.142 3.858 13 N -0.612 5.612 14 C -0.261 4.261 15 H 0.071 0.929 16 C -0.051 4.051 17 N -0.938 5.938 18 Si 0.967 3.033 19 H -0.284 1.284 20 H -0.299 1.299 21 H -0.267 1.267 22 C 0.189 3.811 23 C 0.054 3.946 24 H 0.115 0.885 25 H 0.107 0.893 26 H 0.097 0.903 27 H 0.066 0.934 28 H 0.118 0.882 29 H 0.037 0.963 30 H 0.100 0.900 31 H 0.064 0.936 32 H 0.011 0.989 33 H 0.249 0.751 34 H -0.013 1.013 35 H 0.057 0.943 36 H 0.036 0.964 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.166 6.082 17.829 18.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.119 5.119 3 C -0.037 4.037 4 Cl 0.089 6.911 5 N -0.215 5.215 6 C -0.101 4.101 7 Cl 0.032 6.968 8 C -0.084 4.084 9 C 0.004 3.996 10 N -0.265 5.265 11 C -0.069 4.069 12 C 0.016 3.984 13 N -0.336 5.336 14 C -0.391 4.391 15 H 0.089 0.911 16 C -0.246 4.246 17 N -0.585 5.585 18 Si 0.795 3.205 19 H -0.211 1.211 20 H -0.225 1.225 21 H -0.192 1.192 22 C 0.062 3.938 23 C -0.076 4.076 24 H 0.133 0.867 25 H 0.126 0.874 26 H 0.116 0.884 27 H 0.084 0.916 28 H 0.136 0.864 29 H 0.056 0.944 30 H 0.119 0.881 31 H 0.083 0.917 32 H 0.029 0.971 33 H 0.058 0.942 34 H 0.005 0.995 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.124 6.819 17.441 18.846 hybrid contribution -1.767 -0.406 -0.709 1.947 sum 0.356 6.414 16.732 17.923 Atomic orbital electron populations 1.22752 0.73198 1.06805 1.06554 1.45296 1.09300 1.04088 1.53238 1.22909 0.85515 0.85657 1.09596 1.98425 1.88306 1.07279 1.97128 1.69752 1.18810 1.11347 1.21545 1.20411 0.88434 0.88714 1.12537 1.98351 1.35828 1.65299 1.97355 1.20897 0.88668 0.90372 1.08511 1.20594 1.02206 0.86548 0.90266 1.61834 1.44680 1.05741 1.14237 1.22472 1.00523 0.86392 0.97524 1.21158 0.91376 0.95029 0.90789 1.44431 1.34963 1.01793 1.52433 1.19573 1.14603 1.00533 1.04391 0.91109 1.25775 1.02625 0.99268 0.96900 1.70203 1.39535 1.23782 1.24951 0.85261 0.80004 0.78436 0.76803 1.21070 1.22549 1.19155 1.20640 0.97949 0.83854 0.91320 1.22776 0.91379 0.97215 0.96190 0.86669 0.87406 0.88440 0.91634 0.86433 0.94447 0.88135 0.91727 0.97099 0.94168 0.99508 0.92431 0.94603 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.74 9.89 127.77 1.26 2.00 16 2 N -0.43 -10.14 2.76 -526.36 -1.45 -11.60 16 3 C 0.25 6.56 8.51 180.21 1.53 8.09 16 4 Cl 0.06 1.24 28.77 -2.72 -0.08 1.16 16 5 N -0.49 -15.33 11.26 -182.04 -2.05 -17.38 16 6 C 0.05 1.63 7.70 83.51 0.64 2.28 16 7 Cl 0.00 0.10 28.91 -2.72 -0.08 0.02 16 8 C 0.03 0.87 5.58 40.91 0.23 1.10 16 9 C 0.13 3.09 4.97 85.56 0.42 3.52 16 10 N -0.54 -16.76 4.62 -898.90 -4.15 -20.91 16 11 C 0.06 1.79 5.62 86.38 0.49 2.28 16 12 C 0.14 5.68 6.69 86.35 0.58 6.26 16 13 N -0.61 -30.19 3.03 -697.26 -2.11 -32.30 16 14 C -0.26 -14.02 9.63 84.03 0.81 -13.21 16 15 H 0.07 3.67 7.88 -2.91 -0.02 3.65 16 16 C -0.05 -2.78 4.93 84.86 0.42 -2.36 16 17 N -0.94 -55.41 11.16 21.65 0.24 -55.17 16 18 Si 0.97 43.88 29.59 68.60 2.03 45.91 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 20 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 21 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 22 C 0.19 9.05 5.45 86.50 0.47 9.53 16 23 C 0.05 1.88 4.13 86.54 0.36 2.24 16 24 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.11 1.46 7.81 -2.39 -0.02 1.44 16 26 H 0.10 1.73 4.86 -2.39 -0.01 1.72 16 27 H 0.07 1.27 7.88 -2.39 -0.02 1.25 16 28 H 0.12 2.40 7.76 -2.38 -0.02 2.38 16 29 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.10 2.39 7.99 -2.39 -0.02 2.37 16 31 H 0.06 2.45 7.95 -2.38 -0.02 2.43 16 32 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 33 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 34 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 35 H 0.06 3.09 6.11 -2.39 -0.01 3.08 16 36 H 0.04 1.20 7.57 -2.38 -0.02 1.18 16 37 H 0.07 2.18 5.13 -2.39 -0.01 2.17 16 Total: -1.00 -67.88 326.33 0.66 -67.22 By element: Atomic # 1 Polarization: 0.23 SS G_CDS: 1.10 Total: 1.33 kcal Atomic # 6 Polarization: 14.51 SS G_CDS: 7.21 Total: 21.72 kcal Atomic # 7 Polarization: -127.84 SS G_CDS: -9.53 Total: -137.36 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 17 Polarization: 1.33 SS G_CDS: -0.16 Total: 1.18 kcal Total: -67.88 0.66 -67.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129935822.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.763 kcal (2) G-P(sol) polarization free energy of solvation -67.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds