Wall clock time and date at job start Tue Mar 31 2020 12:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35600 * 116.99892 * 2 1 4 4 C 1.40022 * 119.20075 * 180.02562 * 3 2 1 5 5 C 1.36304 * 119.88409 * 180.02562 * 4 3 2 6 6 C 1.40980 * 118.26105 * 359.97438 * 5 4 3 7 7 C 1.40307 * 121.20009 * 179.97438 * 6 5 4 8 8 C 1.37764 * 119.48264 * 180.02562 * 7 6 5 9 9 N 1.39970 * 119.72213 * 179.97438 * 8 7 6 10 10 C 1.34778 * 119.99832 * 33.66021 * 9 8 7 11 11 O 1.21284 * 120.00158 * 5.27542 * 10 9 8 12 12 C 1.50697 * 119.99394 * 185.27876 * 10 9 8 13 13 S 1.81002 * 109.46855 * 179.97438 * 12 10 9 14 14 C 1.76198 * 100.00247 * 179.97438 * 13 12 10 15 15 H 1.08004 * 119.99825 * 359.97438 * 14 13 12 16 16 C 1.38801 * 120.00253 * 180.02562 * 14 13 12 17 17 N 1.31629 * 119.99977 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00318 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47293 * 89.99187 * 18 16 14 20 20 H 1.48496 * 109.47416 * 209.99636 * 18 16 14 21 21 H 1.48509 * 109.46955 * 329.99764 * 18 16 14 22 22 C 1.39913 * 120.55336 * 0.02647 * 8 7 6 23 23 C 1.35971 * 120.96940 * 359.92624 * 22 8 7 24 24 C 1.40581 * 120.00238 * 0.09507 * 23 22 8 25 25 N 1.31510 * 119.19966 * 0.02562 * 3 2 1 26 26 H 1.08996 * 109.47148 * 60.00334 * 1 2 3 27 27 H 1.09002 * 109.46822 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47263 * 300.00441 * 1 2 3 29 29 H 1.08007 * 120.05853 * 359.71739 * 4 3 2 30 30 H 1.07998 * 120.87199 * 179.97438 * 5 4 3 31 31 H 1.08002 * 120.25939 * 0.09110 * 7 6 5 32 32 H 0.97001 * 119.99550 * 213.65256 * 9 8 7 33 33 H 1.08998 * 109.47497 * 299.99332 * 12 10 9 34 34 H 1.08998 * 109.47444 * 59.99733 * 12 10 9 35 35 H 0.96993 * 120.00014 * 180.02562 * 17 16 14 36 36 H 1.07998 * 119.51900 * 179.97438 * 22 8 7 37 37 H 1.08000 * 119.99608 * 180.02562 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 3.4438 1.2620 -0.0005 5 6 4.0770 2.4690 0.0000 6 6 3.2875 3.6370 0.0005 7 6 3.8747 4.9113 0.0016 8 6 3.0694 6.0290 0.0026 9 7 3.6499 7.3026 0.0043 10 6 4.8136 7.5136 -0.6421 11 8 5.3090 6.6264 -1.3043 12 6 5.4992 8.8519 -0.5419 13 16 7.0272 8.8210 -1.5116 14 6 7.6046 10.4608 -1.2252 15 1 7.0336 11.1333 -0.6021 16 6 8.7927 10.8889 -1.8012 17 7 9.4884 10.0695 -2.5610 18 14 9.4053 12.6271 -1.4970 19 1 10.2729 12.6424 -0.2919 20 1 10.1838 13.0907 -2.6734 21 1 8.2458 13.5302 -1.2835 22 6 1.6761 5.9017 0.0031 23 6 1.0854 4.6770 0.0012 24 6 1.8765 3.5150 0.0005 25 7 1.3130 2.3010 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 4.0203 0.3487 0.0036 30 1 5.1553 2.5291 0.0000 31 1 4.9498 5.0151 0.0006 32 1 3.2146 8.0334 0.4705 33 1 4.8389 9.6282 -0.9283 34 1 5.7355 9.0619 0.5012 35 1 10.3188 10.3685 -2.9632 36 1 1.0606 6.7892 0.0044 37 1 0.0083 4.5970 0.0012 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171311299.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:21 Heat of formation + Delta-G solvation = -13.586468 kcal Electronic energy + Delta-G solvation = -22369.585537 eV Core-core repulsion = 18817.737434 eV Total energy + Delta-G solvation = -3551.848103 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.22291 -39.99132 -38.67622 -36.53178 -34.09881 -33.46881 -32.48996 -30.56143 -30.17031 -28.33573 -27.34599 -25.54844 -24.10805 -23.38150 -22.40337 -20.56802 -19.08373 -18.27219 -18.00142 -17.58531 -16.53663 -16.24844 -15.90856 -15.57551 -14.86173 -14.84414 -14.73566 -14.34599 -14.09512 -14.06567 -13.57671 -13.47852 -13.29044 -12.74838 -12.53585 -12.49405 -12.08674 -12.00017 -11.80183 -11.11745 -11.09584 -11.07634 -10.81955 -10.74147 -9.90629 -9.87822 -9.77723 -9.48559 -9.12318 -8.67337 -8.33806 -7.74183 -6.58471 -6.27820 -3.99525 0.29049 0.69623 1.87768 2.54298 2.82205 2.85514 3.05819 3.18702 3.23206 3.27069 3.54446 3.98267 4.05163 4.13953 4.52181 4.60784 4.74064 4.94371 4.95061 5.01541 5.02432 5.06172 5.07754 5.21933 5.38467 5.44292 5.52779 5.62233 5.73736 5.77468 5.87611 5.99446 6.01551 6.20972 6.26138 6.35484 6.78061 7.03408 7.42156 7.53937 7.67246 8.28972 8.32806 9.17704 10.79581 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.037694 B = 0.002265 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.641165 B =12358.592773 C =12960.351138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.310 6.310 3 C 0.340 3.660 4 C -0.178 4.178 5 C -0.022 4.022 6 C -0.109 4.109 7 C -0.091 4.091 8 C 0.142 3.858 9 N -0.680 5.680 10 C 0.531 3.469 11 O -0.495 6.495 12 C -0.154 4.154 13 S -0.057 6.057 14 C -0.537 4.537 15 H 0.074 0.926 16 C 0.074 3.926 17 N -0.867 5.867 18 Si 0.920 3.080 19 H -0.276 1.276 20 H -0.282 1.282 21 H -0.272 1.272 22 C -0.105 4.105 23 C -0.091 4.091 24 C 0.150 3.850 25 N -0.537 5.537 26 H 0.059 0.941 27 H 0.094 0.906 28 H 0.059 0.941 29 H 0.144 0.856 30 H 0.150 0.850 31 H 0.147 0.853 32 H 0.411 0.589 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.269 0.731 36 H 0.134 0.866 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.026 -14.201 8.119 24.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.216 6.216 3 C 0.147 3.853 4 C -0.198 4.198 5 C -0.048 4.048 6 C -0.112 4.112 7 C -0.112 4.112 8 C 0.047 3.953 9 N -0.326 5.326 10 C 0.319 3.681 11 O -0.368 6.368 12 C -0.305 4.305 13 S 0.170 5.830 14 C -0.685 4.685 15 H 0.092 0.908 16 C -0.136 4.136 17 N -0.502 5.502 18 Si 0.746 3.254 19 H -0.202 1.202 20 H -0.207 1.207 21 H -0.197 1.197 22 C -0.126 4.126 23 C -0.111 4.111 24 C 0.030 3.970 25 N -0.263 5.263 26 H 0.078 0.922 27 H 0.113 0.887 28 H 0.077 0.923 29 H 0.162 0.838 30 H 0.168 0.832 31 H 0.164 0.836 32 H 0.247 0.753 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.079 0.921 36 H 0.151 0.849 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -17.801 -15.890 6.894 24.837 hybrid contribution 0.209 2.701 1.105 2.926 sum -17.591 -13.189 7.999 23.396 Atomic orbital electron populations 1.22847 0.77242 1.02793 1.02583 1.86215 1.22972 1.24818 1.87565 1.19963 0.89328 0.84664 0.91356 1.20838 0.91757 0.99851 1.07370 1.21407 1.00753 0.90393 0.92213 1.18595 0.93653 0.94374 1.04606 1.21223 1.01058 0.89521 0.99432 1.17662 0.91506 0.85319 1.00803 1.43713 1.24608 1.09854 1.54473 1.20560 0.79616 0.90326 0.77643 1.90721 1.63195 1.45076 1.37760 1.23547 1.04801 0.95494 1.06625 1.85418 1.16405 1.19016 1.62193 1.22851 1.10803 0.98228 1.36638 0.90813 1.25000 0.95559 0.98591 0.94423 1.70007 1.14752 1.35456 1.29978 0.86151 0.78822 0.82406 0.78025 1.20229 1.20719 1.19667 1.20698 0.92798 0.98237 1.00905 1.20437 0.99897 0.89605 1.01112 1.18356 0.89985 0.90432 0.98261 1.67570 1.39422 0.97896 1.21453 0.92226 0.88719 0.92270 0.83779 0.83210 0.83563 0.75350 0.88807 0.88679 0.92099 0.84857 0.84536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.36 101.05 1.05 1.36 16 2 O -0.31 -3.33 10.46 -18.50 -0.19 -3.52 16 3 C 0.34 4.09 7.49 -17.02 -0.13 3.96 16 4 C -0.18 -1.89 9.95 -39.61 -0.39 -2.29 16 5 C -0.02 -0.25 9.88 -39.24 -0.39 -0.64 16 6 C -0.11 -1.45 5.74 -106.79 -0.61 -2.06 16 7 C -0.09 -1.29 8.40 -38.98 -0.33 -1.61 16 8 C 0.14 1.85 6.27 -83.69 -0.52 1.32 16 9 N -0.68 -8.70 5.34 -9.86 -0.05 -8.76 16 10 C 0.53 9.23 7.57 -10.99 -0.08 9.15 16 11 O -0.50 -10.43 13.55 5.55 0.08 -10.35 16 12 C -0.15 -2.89 6.16 36.00 0.22 -2.67 16 13 S -0.06 -1.48 20.57 -107.50 -2.21 -3.69 16 14 C -0.54 -14.83 9.50 30.94 0.29 -14.54 16 15 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 16 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 17 N -0.87 -25.60 13.22 55.49 0.73 -24.87 16 18 Si 0.92 20.95 29.55 -169.99 -5.02 15.92 16 19 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 22 C -0.10 -1.10 9.85 -39.77 -0.39 -1.49 16 23 C -0.09 -1.01 9.96 -39.51 -0.39 -1.40 16 24 C 0.15 1.96 6.60 -84.82 -0.56 1.40 16 25 N -0.54 -6.90 9.13 -11.03 -0.10 -7.00 16 26 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 27 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 29 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 30 H 0.15 1.38 8.06 -52.49 -0.42 0.95 16 31 H 0.15 2.29 6.40 -52.49 -0.34 1.95 16 32 H 0.41 3.74 8.82 -40.82 -0.36 3.38 16 33 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 34 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 35 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 37 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 340.56 15.07 5.13 5.13 Total: -1.00 -34.47 340.56 -8.02 -42.49 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -4.04 Total: 2.19 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -2.34 Total: -7.55 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: 0.58 Total: -40.62 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.12 Total: -13.87 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -2.21 Total: -3.69 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.47 -8.02 -42.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171311299.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.901 kcal (2) G-P(sol) polarization free energy of solvation -34.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds