Wall clock time and date at job start Tue Mar 31 2020 12:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35600 * 116.99892 * 2 1 4 4 C 1.40022 * 119.20075 * 180.02562 * 3 2 1 5 5 C 1.36304 * 119.88409 * 180.02562 * 4 3 2 6 6 C 1.40980 * 118.26105 * 359.97438 * 5 4 3 7 7 C 1.40307 * 121.20009 * 179.97438 * 6 5 4 8 8 C 1.37764 * 119.48264 * 180.02562 * 7 6 5 9 9 N 1.39970 * 119.72213 * 179.97438 * 8 7 6 10 10 C 1.34778 * 119.99832 * 33.66021 * 9 8 7 11 11 O 1.21284 * 120.00158 * 5.27542 * 10 9 8 12 12 C 1.50697 * 119.99394 * 185.27876 * 10 9 8 13 13 S 1.81002 * 109.46855 * 179.97438 * 12 10 9 14 14 C 1.76198 * 100.00247 * 179.97438 * 13 12 10 15 15 H 1.08004 * 119.99825 * 359.97438 * 14 13 12 16 16 C 1.38801 * 120.00253 * 180.02562 * 14 13 12 17 17 N 1.31629 * 119.99977 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00318 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47293 * 89.99187 * 18 16 14 20 20 H 1.48496 * 109.47416 * 209.99636 * 18 16 14 21 21 H 1.48509 * 109.46955 * 329.99764 * 18 16 14 22 22 C 1.39913 * 120.55336 * 0.02647 * 8 7 6 23 23 C 1.35971 * 120.96940 * 359.92624 * 22 8 7 24 24 C 1.40581 * 120.00238 * 0.09507 * 23 22 8 25 25 N 1.31510 * 119.19966 * 0.02562 * 3 2 1 26 26 H 1.08996 * 109.47148 * 60.00334 * 1 2 3 27 27 H 1.09002 * 109.46822 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47263 * 300.00441 * 1 2 3 29 29 H 1.08007 * 120.05853 * 359.71739 * 4 3 2 30 30 H 1.07998 * 120.87199 * 179.97438 * 5 4 3 31 31 H 1.08002 * 120.25939 * 0.09110 * 7 6 5 32 32 H 0.97001 * 119.99550 * 213.65256 * 9 8 7 33 33 H 1.08998 * 109.47497 * 299.99332 * 12 10 9 34 34 H 1.08998 * 109.47444 * 59.99733 * 12 10 9 35 35 H 0.96993 * 120.00014 * 180.02562 * 17 16 14 36 36 H 1.07998 * 119.51900 * 179.97438 * 22 8 7 37 37 H 1.08000 * 119.99608 * 180.02562 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 3.4438 1.2620 -0.0005 5 6 4.0770 2.4690 0.0000 6 6 3.2875 3.6370 0.0005 7 6 3.8747 4.9113 0.0016 8 6 3.0694 6.0290 0.0026 9 7 3.6499 7.3026 0.0043 10 6 4.8136 7.5136 -0.6421 11 8 5.3090 6.6264 -1.3043 12 6 5.4992 8.8519 -0.5419 13 16 7.0272 8.8210 -1.5116 14 6 7.6046 10.4608 -1.2252 15 1 7.0336 11.1333 -0.6021 16 6 8.7927 10.8889 -1.8012 17 7 9.4884 10.0695 -2.5610 18 14 9.4053 12.6271 -1.4970 19 1 10.2729 12.6424 -0.2919 20 1 10.1838 13.0907 -2.6734 21 1 8.2458 13.5302 -1.2835 22 6 1.6761 5.9017 0.0031 23 6 1.0854 4.6770 0.0012 24 6 1.8765 3.5150 0.0005 25 7 1.3130 2.3010 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 4.0203 0.3487 0.0036 30 1 5.1553 2.5291 0.0000 31 1 4.9498 5.0151 0.0006 32 1 3.2146 8.0334 0.4705 33 1 4.8389 9.6282 -0.9283 34 1 5.7355 9.0619 0.5012 35 1 10.3188 10.3685 -2.9632 36 1 1.0606 6.7892 0.0044 37 1 0.0083 4.5970 0.0012 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171311299.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:20 Heat of formation + Delta-G solvation = -38.063835 kcal Electronic energy + Delta-G solvation = -22370.646955 eV Core-core repulsion = 18817.737434 eV Total energy + Delta-G solvation = -3552.909521 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.16530 -41.14154 -39.63564 -37.55521 -35.19637 -34.58205 -34.42008 -31.54442 -31.38631 -29.38630 -28.17438 -27.63311 -24.99423 -24.38156 -23.34614 -21.80517 -20.11071 -19.83881 -18.91370 -18.81954 -17.90149 -17.05713 -16.93852 -16.87140 -16.71764 -16.04307 -15.93029 -15.51630 -15.22325 -14.98655 -14.87673 -14.54893 -14.38050 -14.18725 -13.78621 -13.43100 -13.16369 -13.14684 -12.89097 -12.77887 -12.64306 -12.61181 -12.01356 -11.74150 -11.63890 -11.14235 -11.11245 -10.80999 -10.60465 -10.28605 -9.55948 -8.76940 -8.65133 -8.34876 -6.12648 -0.62122 -0.24235 0.92654 1.23695 1.38726 1.43021 1.45739 1.56298 1.95190 2.05475 2.15237 2.26921 2.99778 3.04448 3.19973 3.28497 3.61520 3.70744 3.87244 3.92705 4.06497 4.25861 4.27440 4.31094 4.44907 4.46222 4.49651 4.60170 4.75137 4.79118 4.83824 4.98804 5.10352 5.24696 5.36306 5.39551 5.42773 5.77267 6.18907 6.20048 6.34933 6.74940 7.06878 7.08290 8.74132 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.037694 B = 0.002265 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.641165 B =12358.592773 C =12960.351138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.316 6.316 3 C 0.330 3.670 4 C -0.175 4.175 5 C -0.032 4.032 6 C -0.127 4.127 7 C -0.109 4.109 8 C 0.129 3.871 9 N -0.655 5.655 10 C 0.535 3.465 11 O -0.540 6.540 12 C -0.129 4.129 13 S -0.147 6.147 14 C -0.545 4.545 15 H 0.085 0.915 16 C 0.013 3.987 17 N -0.911 5.911 18 Si 0.998 3.002 19 H -0.269 1.269 20 H -0.280 1.280 21 H -0.257 1.257 22 C -0.093 4.093 23 C -0.090 4.090 24 C 0.134 3.866 25 N -0.547 5.547 26 H 0.055 0.945 27 H 0.125 0.875 28 H 0.058 0.942 29 H 0.169 0.831 30 H 0.163 0.837 31 H 0.123 0.877 32 H 0.431 0.569 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.271 0.729 36 H 0.171 0.829 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.189 -13.356 9.363 25.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.221 6.221 3 C 0.137 3.863 4 C -0.195 4.195 5 C -0.057 4.057 6 C -0.130 4.130 7 C -0.131 4.131 8 C 0.034 3.966 9 N -0.302 5.302 10 C 0.322 3.678 11 O -0.415 6.415 12 C -0.280 4.280 13 S 0.080 5.920 14 C -0.693 4.693 15 H 0.103 0.897 16 C -0.192 4.192 17 N -0.548 5.548 18 Si 0.819 3.181 19 H -0.194 1.194 20 H -0.205 1.205 21 H -0.181 1.181 22 C -0.114 4.114 23 C -0.109 4.109 24 C 0.013 3.987 25 N -0.274 5.274 26 H 0.074 0.926 27 H 0.143 0.857 28 H 0.077 0.923 29 H 0.187 0.813 30 H 0.181 0.819 31 H 0.141 0.859 32 H 0.271 0.729 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.080 0.920 36 H 0.189 0.811 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -20.020 -15.047 8.176 26.345 hybrid contribution 0.727 2.270 0.771 2.505 sum -19.293 -12.777 8.947 24.809 Atomic orbital electron populations 1.23080 0.75723 1.04743 1.02322 1.86218 1.24521 1.24121 1.87276 1.20286 0.90017 0.84970 0.91013 1.21110 0.91624 1.00534 1.06226 1.21639 1.01512 0.90284 0.92219 1.18754 0.94323 0.94538 1.05337 1.21140 1.00208 0.90776 1.00951 1.17870 0.92638 0.84593 1.01453 1.43320 1.22975 1.10705 1.53240 1.20286 0.80581 0.89213 0.77706 1.90721 1.64700 1.46074 1.40025 1.23363 1.01183 0.97198 1.06252 1.85599 1.21760 1.19813 1.64858 1.23209 1.11172 0.98394 1.36539 0.89672 1.26116 0.95761 1.03341 0.93977 1.70174 1.15338 1.37873 1.31376 0.84964 0.78523 0.76599 0.77975 1.19381 1.20496 1.18099 1.20956 0.91608 0.99502 0.99348 1.20757 1.00963 0.89035 1.00122 1.18715 0.90147 0.91301 0.98492 1.67596 1.39668 0.98030 1.22096 0.92612 0.85733 0.92347 0.81334 0.81940 0.85879 0.72897 0.86496 0.86510 0.92026 0.81132 0.82190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.36 113.37 1.17 1.68 16 2 O -0.32 -6.38 10.46 -89.10 -0.93 -7.31 16 3 C 0.33 7.68 7.49 85.17 0.64 8.32 16 4 C -0.17 -3.62 9.95 22.25 0.22 -3.40 16 5 C -0.03 -0.72 9.88 22.49 0.22 -0.50 16 6 C -0.13 -3.38 5.74 -21.27 -0.12 -3.50 16 7 C -0.11 -3.15 8.40 22.66 0.19 -2.96 16 8 C 0.13 3.20 6.27 38.13 0.24 3.44 16 9 N -0.65 -15.61 5.34 -303.50 -1.62 -17.23 16 10 C 0.53 18.35 7.57 87.66 0.66 19.01 16 11 O -0.54 -23.41 13.55 -3.04 -0.04 -23.45 16 12 C -0.13 -4.70 6.16 71.24 0.44 -4.27 16 13 S -0.15 -7.86 20.57 -56.49 -1.16 -9.02 16 14 C -0.55 -30.15 9.50 67.95 0.65 -29.50 16 15 H 0.09 4.33 7.80 -2.91 -0.02 4.31 16 16 C 0.01 0.72 5.49 84.86 0.47 1.18 16 17 N -0.91 -55.05 13.22 21.65 0.29 -54.76 16 18 Si 1.00 42.67 29.55 68.60 2.03 44.70 16 19 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 20 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 21 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 22 C -0.09 -1.71 9.85 22.15 0.22 -1.49 16 23 C -0.09 -1.79 9.96 22.31 0.22 -1.56 16 24 C 0.13 3.38 6.60 40.24 0.27 3.65 16 25 N -0.55 -13.57 9.13 -302.09 -2.76 -16.33 16 26 H 0.06 0.82 8.09 -2.39 -0.02 0.80 16 27 H 0.12 0.95 8.14 -2.39 -0.02 0.94 16 28 H 0.06 0.83 8.09 -2.39 -0.02 0.81 16 29 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 30 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 31 H 0.12 4.10 6.40 -2.91 -0.02 4.08 16 32 H 0.43 6.51 8.82 -92.71 -0.82 5.69 16 33 H 0.12 3.74 8.14 -2.40 -0.02 3.72 16 34 H 0.12 3.77 8.14 -2.40 -0.02 3.75 16 35 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 36 H 0.17 1.81 8.06 -2.91 -0.02 1.78 16 37 H 0.16 2.39 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -77.58 340.56 1.59 -75.99 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.30 Total: 17.31 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: 5.48 Total: -9.91 kcal Atomic # 7 Polarization: -84.23 SS G_CDS: -4.09 Total: -88.32 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -0.97 Total: -30.76 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Atomic # 16 Polarization: -7.86 SS G_CDS: -1.16 Total: -9.02 kcal Total: -77.58 1.59 -75.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171311299.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.927 kcal (2) G-P(sol) polarization free energy of solvation -77.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds