Wall clock time and date at job start Tue Mar 31 2020 12:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35802 * 116.99875 * 2 1 4 4 C 1.38926 * 119.90772 * 179.97438 * 3 2 1 5 5 C 1.37778 * 120.09211 * 180.02562 * 4 3 2 6 6 C 1.39696 * 119.90744 * 359.97438 * 5 4 3 7 7 C 1.47649 * 120.09055 * 179.97438 * 6 5 4 8 8 N 1.30418 * 124.74393 * 0.03105 * 7 6 5 9 9 C 1.30600 * 117.30059 * 179.97438 * 8 7 6 10 10 C 1.37032 * 114.01764 * 0.02562 * 9 8 7 11 11 C 1.46381 * 126.12344 * 179.97438 * 10 9 8 12 12 O 1.21759 * 119.99797 * 7.17355 * 11 10 9 13 13 N 1.34780 * 119.99971 * 187.17992 * 11 10 9 14 14 C 1.46501 * 120.00030 * 5.37272 * 13 11 10 15 15 C 1.36861 * 119.99799 * 185.37107 * 13 11 10 16 16 H 1.08000 * 120.00427 * 340.56951 * 15 13 11 17 17 C 1.39014 * 119.99650 * 160.57201 * 15 13 11 18 18 N 1.31399 * 120.00039 * 341.91850 * 17 15 13 19 19 Si 1.86805 * 119.99907 * 161.92288 * 17 15 13 20 20 H 1.48500 * 109.46945 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47162 * 120.00016 * 19 17 15 22 22 H 1.48495 * 109.46888 * 239.99987 * 19 17 15 23 23 S 1.70920 * 124.74176 * 180.02562 * 7 6 5 24 24 C 1.39694 * 119.81571 * 0.25546 * 6 5 4 25 25 C 1.37771 * 119.90795 * 359.48395 * 24 6 5 26 26 H 1.09003 * 109.47101 * 299.99742 * 1 2 3 27 27 H 1.08998 * 109.47534 * 59.99507 * 1 2 3 28 28 H 1.08998 * 109.47171 * 180.02562 * 1 2 3 29 29 H 1.08005 * 119.95548 * 0.02562 * 4 3 2 30 30 H 1.08008 * 120.04692 * 180.02562 * 5 4 3 31 31 H 1.08000 * 122.98740 * 179.97438 * 9 8 7 32 32 H 1.08999 * 109.46957 * 36.09567 * 14 13 11 33 33 H 1.08997 * 109.46951 * 156.09662 * 14 13 11 34 34 H 1.08999 * 109.47236 * 276.09854 * 14 13 11 35 35 H 0.97003 * 119.99985 * 179.97438 * 18 17 15 36 36 H 1.08002 * 120.04291 * 179.74874 * 24 6 5 37 37 H 1.07999 * 119.95471 * 180.25345 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 3.4330 1.2805 0.0005 5 6 4.0624 2.5061 0.0011 6 6 3.3034 3.6789 0.0005 7 6 3.9737 4.9945 0.0017 8 7 5.2660 5.1702 0.0026 9 6 5.7032 6.4009 0.0031 10 6 4.7104 7.3454 0.0030 11 6 4.9002 8.7969 0.0039 12 8 6.0166 9.2649 -0.1268 13 7 3.8392 9.6152 0.1496 14 6 2.5140 9.0544 0.4246 15 6 3.9999 10.9699 0.0407 16 1 4.9806 11.4082 0.1527 17 6 2.9007 11.7819 -0.2140 18 7 1.7958 11.2596 -0.6966 19 14 2.9945 13.6157 0.1297 20 1 4.3380 13.9506 0.6662 21 1 2.7622 14.3678 -1.1295 22 1 1.9576 13.9862 1.1260 23 16 3.1645 6.5000 0.0018 24 6 1.9085 3.6035 0.0049 25 6 1.2870 2.3740 -0.0011 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 4.0191 0.3733 0.0005 30 1 5.1411 2.5601 0.0011 31 1 6.7536 6.6517 0.0042 32 1 2.6151 8.1847 1.0737 33 1 1.8967 9.8057 0.9171 34 1 2.0443 8.7557 -0.5126 35 1 1.0286 11.8262 -0.8740 36 1 1.3181 4.5079 0.0086 37 1 0.2086 2.3149 -0.0019 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172933211.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:56 Heat of formation + Delta-G solvation = 13.816109 kcal Electronic energy + Delta-G solvation = -22872.785280 eV Core-core repulsion = 19322.125442 eV Total energy + Delta-G solvation = -3550.659838 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.30732 -39.26965 -38.34637 -37.33905 -34.90075 -32.10287 -31.60014 -31.21060 -28.97895 -27.71325 -26.69677 -25.56505 -24.31743 -22.88831 -22.11992 -20.85414 -18.79768 -18.20835 -17.92591 -17.14429 -16.25615 -15.99420 -15.86854 -15.52306 -14.97729 -14.71341 -14.56006 -14.12150 -13.95023 -13.77297 -13.70705 -13.46326 -12.76290 -12.70980 -12.35737 -12.07843 -12.01894 -11.85161 -11.62070 -11.35250 -11.17789 -11.04411 -10.85439 -10.60577 -10.46449 -9.44979 -9.20406 -9.09594 -9.08271 -8.80051 -8.68689 -8.02080 -7.66293 -6.66526 -4.04521 0.35864 1.21835 1.53577 1.72119 2.16691 2.97640 3.01875 3.11795 3.12607 3.19719 3.76753 3.91147 4.11172 4.29098 4.58318 4.64718 4.71717 4.84547 4.85446 4.89449 5.13786 5.18849 5.22331 5.40789 5.53692 5.63927 5.84636 5.90436 5.96469 6.06037 6.15401 6.41056 6.47753 6.55262 6.68699 6.85011 7.14709 7.28618 7.81394 8.12924 8.20071 8.89542 9.07801 9.70358 10.36807 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.025822 B = 0.002925 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.066169 B = 9569.015665 C =10593.051390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.317 6.317 3 C 0.130 3.870 4 C -0.152 4.152 5 C -0.040 4.040 6 C -0.045 4.045 7 C 0.010 3.990 8 N -0.470 5.470 9 C 0.075 3.925 10 C -0.241 4.241 11 C 0.499 3.501 12 O -0.580 6.580 13 N -0.422 5.422 14 C 0.090 3.910 15 C -0.293 4.293 16 H 0.111 0.889 17 C 0.030 3.970 18 N -0.861 5.861 19 Si 0.932 3.068 20 H -0.264 1.264 21 H -0.278 1.278 22 H -0.277 1.277 23 S 0.202 5.798 24 C -0.065 4.065 25 C -0.204 4.204 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.099 0.901 29 H 0.134 0.866 30 H 0.142 0.858 31 H 0.182 0.818 32 H 0.039 0.961 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.275 0.725 36 H 0.129 0.871 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.391 -17.333 2.167 18.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.231 6.231 3 C 0.083 3.917 4 C -0.171 4.171 5 C -0.061 4.061 6 C -0.049 4.049 7 C -0.258 4.258 8 N -0.184 5.184 9 C -0.084 4.084 10 C -0.367 4.367 11 C 0.288 3.712 12 O -0.467 6.467 13 N -0.137 5.137 14 C -0.056 4.056 15 C -0.422 4.422 16 H 0.128 0.872 17 C -0.176 4.176 18 N -0.498 5.498 19 Si 0.757 3.243 20 H -0.188 1.188 21 H -0.204 1.204 22 H -0.202 1.202 23 S 0.462 5.538 24 C -0.086 4.086 25 C -0.223 4.223 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.117 0.883 29 H 0.152 0.848 30 H 0.160 0.840 31 H 0.198 0.802 32 H 0.056 0.944 33 H 0.117 0.883 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.147 0.853 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.727 -17.363 2.045 19.114 hybrid contribution 0.400 1.164 0.014 1.230 sum -7.327 -16.199 2.059 17.898 Atomic orbital electron populations 1.23076 0.78344 1.03925 1.01570 1.86043 1.21453 1.27033 1.88538 1.19178 0.92383 0.84061 0.96045 1.20381 0.91184 0.98608 1.06933 1.21129 1.00735 0.89855 0.94413 1.17830 0.92134 0.89608 1.05297 1.25420 0.93483 0.99427 1.07518 1.66263 1.12632 1.23756 1.15735 1.22112 1.00818 0.84723 1.00779 1.26573 0.95163 1.00375 1.14548 1.16506 0.85971 0.82752 0.85972 1.90678 1.23420 1.75235 1.57389 1.43601 1.06354 1.06604 1.57178 1.21835 0.86280 0.96920 1.00560 1.19923 0.96939 0.79870 1.45481 0.87151 1.25473 0.95316 1.01446 0.95385 1.70021 1.04261 1.37417 1.38118 0.85765 0.79048 0.81030 0.78424 1.18767 1.20376 1.20231 1.84245 1.09047 0.95292 1.65253 1.20976 0.92957 0.97641 0.96977 1.21056 1.00102 0.91768 1.09374 0.92502 0.92483 0.88282 0.84824 0.84038 0.80155 0.94376 0.88326 0.91733 0.91510 0.85326 0.84975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.18 10.49 -19.12 -0.20 -3.38 16 3 C 0.13 1.44 6.69 -39.07 -0.26 1.18 16 4 C -0.15 -1.73 9.97 -39.50 -0.39 -2.13 16 5 C -0.04 -0.52 9.66 -39.21 -0.38 -0.90 16 6 C -0.05 -0.65 5.87 -104.97 -0.62 -1.26 16 7 C 0.01 0.18 7.12 -14.31 -0.10 0.07 16 8 N -0.47 -8.64 10.03 -12.01 -0.12 -8.76 16 9 C 0.07 1.47 11.16 -18.51 -0.21 1.27 16 10 C -0.24 -5.12 6.24 -36.74 -0.23 -5.35 16 11 C 0.50 12.62 7.58 -12.98 -0.10 12.53 16 12 O -0.58 -16.41 16.53 5.14 0.08 -16.33 16 13 N -0.42 -10.66 3.01 -123.80 -0.37 -11.03 16 14 C 0.09 1.92 7.18 59.85 0.43 2.35 16 15 C -0.29 -7.82 9.33 -15.02 -0.14 -7.96 16 16 H 0.11 3.08 7.35 -52.49 -0.39 2.69 16 17 C 0.03 0.73 4.94 -17.45 -0.09 0.65 16 18 N -0.86 -21.26 10.85 55.50 0.60 -20.66 16 19 Si 0.93 19.32 29.59 -169.99 -5.03 14.29 16 20 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 21 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 23 S 0.20 3.46 16.90 -107.50 -1.82 1.64 16 24 C -0.06 -0.79 9.56 -39.21 -0.37 -1.16 16 25 C -0.20 -2.14 9.02 -39.50 -0.36 -2.50 16 26 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 27 H 0.06 0.30 7.65 -51.93 -0.40 -0.09 16 28 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 30 H 0.14 1.81 7.78 -52.48 -0.41 1.40 16 31 H 0.18 3.39 8.06 -52.49 -0.42 2.97 16 32 H 0.04 0.73 5.11 -27.96 -0.14 0.58 16 33 H 0.10 2.18 6.46 -51.93 -0.34 1.85 16 34 H 0.06 1.38 7.39 -51.93 -0.38 1.00 16 35 H 0.27 6.31 8.31 -40.82 -0.34 5.97 16 36 H 0.13 1.41 7.21 -52.49 -0.38 1.03 16 37 H 0.13 1.03 6.28 -52.49 -0.33 0.70 16 LS Contribution 328.32 15.07 4.95 4.95 Total: -1.00 -30.86 328.32 -7.29 -38.15 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -3.56 Total: 3.20 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -1.82 Total: -2.06 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.11 Total: -40.45 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.12 Total: -19.71 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.29 kcal Atomic # 16 Polarization: 3.46 SS G_CDS: -1.82 Total: 1.64 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.86 -7.29 -38.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172933211.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.967 kcal (2) G-P(sol) polarization free energy of solvation -30.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds