Wall clock time and date at job start Tue Mar 31 2020 12:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35802 * 116.99875 * 2 1 4 4 C 1.38926 * 119.90772 * 179.97438 * 3 2 1 5 5 C 1.37778 * 120.09211 * 180.02562 * 4 3 2 6 6 C 1.39696 * 119.90744 * 359.97438 * 5 4 3 7 7 C 1.47649 * 120.09055 * 179.97438 * 6 5 4 8 8 N 1.30418 * 124.74393 * 0.03105 * 7 6 5 9 9 C 1.30600 * 117.30059 * 179.97438 * 8 7 6 10 10 C 1.37032 * 114.01764 * 0.02562 * 9 8 7 11 11 C 1.46381 * 126.12344 * 179.97438 * 10 9 8 12 12 O 1.21759 * 119.99797 * 7.17355 * 11 10 9 13 13 N 1.34780 * 119.99971 * 187.17992 * 11 10 9 14 14 C 1.46501 * 120.00030 * 5.37272 * 13 11 10 15 15 C 1.36861 * 119.99799 * 185.37107 * 13 11 10 16 16 H 1.08000 * 120.00427 * 340.56951 * 15 13 11 17 17 C 1.39014 * 119.99650 * 160.57201 * 15 13 11 18 18 N 1.31399 * 120.00039 * 341.91850 * 17 15 13 19 19 Si 1.86805 * 119.99907 * 161.92288 * 17 15 13 20 20 H 1.48500 * 109.46945 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47162 * 120.00016 * 19 17 15 22 22 H 1.48495 * 109.46888 * 239.99987 * 19 17 15 23 23 S 1.70920 * 124.74176 * 180.02562 * 7 6 5 24 24 C 1.39694 * 119.81571 * 0.25546 * 6 5 4 25 25 C 1.37771 * 119.90795 * 359.48395 * 24 6 5 26 26 H 1.09003 * 109.47101 * 299.99742 * 1 2 3 27 27 H 1.08998 * 109.47534 * 59.99507 * 1 2 3 28 28 H 1.08998 * 109.47171 * 180.02562 * 1 2 3 29 29 H 1.08005 * 119.95548 * 0.02562 * 4 3 2 30 30 H 1.08008 * 120.04692 * 180.02562 * 5 4 3 31 31 H 1.08000 * 122.98740 * 179.97438 * 9 8 7 32 32 H 1.08999 * 109.46957 * 36.09567 * 14 13 11 33 33 H 1.08997 * 109.46951 * 156.09662 * 14 13 11 34 34 H 1.08999 * 109.47236 * 276.09854 * 14 13 11 35 35 H 0.97003 * 119.99985 * 179.97438 * 18 17 15 36 36 H 1.08002 * 120.04291 * 179.74874 * 24 6 5 37 37 H 1.07999 * 119.95471 * 180.25345 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 3.4330 1.2805 0.0005 5 6 4.0624 2.5061 0.0011 6 6 3.3034 3.6789 0.0005 7 6 3.9737 4.9945 0.0017 8 7 5.2660 5.1702 0.0026 9 6 5.7032 6.4009 0.0031 10 6 4.7104 7.3454 0.0030 11 6 4.9002 8.7969 0.0039 12 8 6.0166 9.2649 -0.1268 13 7 3.8392 9.6152 0.1496 14 6 2.5140 9.0544 0.4246 15 6 3.9999 10.9699 0.0407 16 1 4.9806 11.4082 0.1527 17 6 2.9007 11.7819 -0.2140 18 7 1.7958 11.2596 -0.6966 19 14 2.9945 13.6157 0.1297 20 1 4.3380 13.9506 0.6662 21 1 2.7622 14.3678 -1.1295 22 1 1.9576 13.9862 1.1260 23 16 3.1645 6.5000 0.0018 24 6 1.9085 3.6035 0.0049 25 6 1.2870 2.3740 -0.0011 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 4.0191 0.3733 0.0005 30 1 5.1411 2.5601 0.0011 31 1 6.7536 6.6517 0.0042 32 1 2.6151 8.1847 1.0737 33 1 1.8967 9.8057 0.9171 34 1 2.0443 8.7557 -0.5126 35 1 1.0286 11.8262 -0.8740 36 1 1.3181 4.5079 0.0086 37 1 0.2086 2.3149 -0.0019 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172933211.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:56 Heat of formation + Delta-G solvation = -5.676167 kcal Electronic energy + Delta-G solvation = -22873.630528 eV Core-core repulsion = 19322.125442 eV Total energy + Delta-G solvation = -3551.505086 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.23793 -40.81255 -39.98293 -38.31807 -36.83101 -33.93682 -32.78090 -32.18667 -30.34387 -28.54984 -28.35073 -27.06468 -25.90930 -23.87674 -23.27610 -22.37788 -20.08942 -19.56878 -19.06510 -19.02547 -17.60754 -17.21617 -16.85286 -16.65911 -16.58858 -16.30462 -15.95325 -15.56318 -15.27241 -15.15624 -14.73043 -14.56456 -14.25081 -13.96122 -13.62362 -13.51198 -13.40736 -13.32593 -12.78221 -12.76315 -12.55537 -12.43688 -12.12305 -12.11353 -11.82845 -11.19428 -10.80714 -10.51540 -10.45430 -10.23574 -10.08794 -9.85137 -8.85891 -8.51116 -6.04452 -0.98648 0.23079 0.32102 0.38031 0.68254 1.35387 1.42136 1.56161 1.64218 2.20440 2.28256 2.32875 2.77203 2.82889 2.98547 3.04935 3.76389 3.85841 3.89489 4.01405 4.20862 4.26877 4.34056 4.37735 4.45882 4.48585 4.63512 4.74011 4.79979 4.98256 4.98924 5.09597 5.20321 5.28965 5.35228 5.45401 5.63862 5.91461 6.29813 6.37783 6.65183 6.97950 7.20322 7.79905 8.52160 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.025822 B = 0.002925 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.066169 B = 9569.015665 C =10593.051390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.328 6.328 3 C 0.141 3.859 4 C -0.158 4.158 5 C -0.038 4.038 6 C -0.085 4.085 7 C 0.041 3.959 8 N -0.490 5.490 9 C 0.095 3.905 10 C -0.297 4.297 11 C 0.494 3.506 12 O -0.627 6.627 13 N -0.438 5.438 14 C 0.100 3.900 15 C -0.344 4.344 16 H 0.080 0.920 17 C 0.005 3.995 18 N -0.878 5.878 19 Si 0.995 3.005 20 H -0.274 1.274 21 H -0.272 1.272 22 H -0.259 1.259 23 S 0.255 5.745 24 C -0.059 4.059 25 C -0.201 4.201 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.120 0.880 29 H 0.151 0.849 30 H 0.138 0.862 31 H 0.181 0.819 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.283 0.717 36 H 0.141 0.859 37 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.203 -20.062 2.378 22.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.241 6.241 3 C 0.093 3.907 4 C -0.177 4.177 5 C -0.060 4.060 6 C -0.089 4.089 7 C -0.227 4.227 8 N -0.205 5.205 9 C -0.065 4.065 10 C -0.422 4.422 11 C 0.284 3.716 12 O -0.517 6.517 13 N -0.154 5.154 14 C -0.044 4.044 15 C -0.472 4.472 16 H 0.098 0.902 17 C -0.200 4.200 18 N -0.514 5.514 19 Si 0.818 3.182 20 H -0.198 1.198 21 H -0.197 1.197 22 H -0.184 1.184 23 S 0.516 5.484 24 C -0.079 4.079 25 C -0.219 4.219 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.138 0.862 29 H 0.169 0.831 30 H 0.156 0.844 31 H 0.198 0.802 32 H 0.080 0.920 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.159 0.841 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -10.601 -20.096 2.257 22.832 hybrid contribution 1.151 1.462 -0.070 1.862 sum -9.450 -18.634 2.187 21.008 Atomic orbital electron populations 1.23435 0.76082 1.05869 1.02672 1.86054 1.23777 1.26358 1.87871 1.19365 0.92469 0.84850 0.93970 1.20559 0.91888 0.98578 1.06684 1.21154 1.00677 0.90146 0.94017 1.17936 0.93249 0.88463 1.09213 1.26071 0.93204 1.00735 1.02734 1.66392 1.13413 1.22656 1.18002 1.22247 1.00916 0.85074 0.98262 1.26159 0.98237 0.98689 1.19115 1.17027 0.85403 0.84430 0.84762 1.90606 1.25136 1.76878 1.59052 1.43733 1.07453 1.06366 1.57832 1.21786 0.84531 0.97338 1.00770 1.19773 0.96637 0.81169 1.49669 0.90176 1.26172 0.94543 1.05063 0.94178 1.70049 1.04621 1.38870 1.37890 0.84857 0.78770 0.76000 0.78603 1.19833 1.19730 1.18383 1.83829 1.06054 0.94065 1.64441 1.21161 0.92006 0.98981 0.95779 1.21359 1.01716 0.90714 1.08144 0.91299 0.91359 0.86189 0.83135 0.84434 0.80171 0.92026 0.89216 0.91892 0.90705 0.84148 0.81851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.81 113.37 1.11 1.22 16 2 O -0.33 -5.24 10.49 -91.33 -0.96 -6.19 16 3 C 0.14 2.59 6.69 22.60 0.15 2.74 16 4 C -0.16 -3.14 9.97 22.33 0.22 -2.92 16 5 C -0.04 -0.91 9.66 22.51 0.22 -0.70 16 6 C -0.08 -2.22 5.87 -20.09 -0.12 -2.34 16 7 C 0.04 1.34 7.12 87.39 0.62 1.96 16 8 N -0.49 -17.79 10.03 -191.91 -1.92 -19.71 16 9 C 0.10 3.82 11.16 84.59 0.94 4.76 16 10 C -0.30 -12.92 6.24 24.11 0.15 -12.77 16 11 C 0.49 26.32 7.58 86.36 0.65 26.97 16 12 O -0.63 -37.85 16.53 -4.54 -0.08 -37.93 16 13 N -0.44 -23.19 3.01 -663.77 -2.00 -25.19 16 14 C 0.10 4.37 7.18 127.77 0.92 5.29 16 15 C -0.34 -19.39 9.33 84.09 0.78 -18.60 16 16 H 0.08 4.85 7.35 -2.91 -0.02 4.83 16 17 C 0.00 0.24 4.94 84.94 0.42 0.66 16 18 N -0.88 -43.68 10.85 21.68 0.24 -43.45 16 19 Si 1.00 40.30 29.59 68.60 2.03 42.33 16 20 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 21 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 22 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 23 S 0.25 8.44 16.90 -56.49 -0.95 7.49 16 24 C -0.06 -1.22 9.56 22.51 0.22 -1.01 16 25 C -0.20 -3.36 9.02 22.33 0.20 -3.15 16 26 H 0.07 0.40 7.66 -2.39 -0.02 0.38 16 27 H 0.07 0.41 7.65 -2.39 -0.02 0.39 16 28 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.15 2.42 8.06 -2.91 -0.02 2.39 16 30 H 0.14 3.33 7.78 -2.91 -0.02 3.31 16 31 H 0.18 7.06 8.06 -2.91 -0.02 7.04 16 32 H 0.06 2.32 5.11 -17.63 -0.09 2.23 16 33 H 0.09 4.03 6.46 -2.39 -0.02 4.01 16 34 H 0.06 2.71 7.39 -2.39 -0.02 2.69 16 35 H 0.28 12.87 8.31 -92.71 -0.77 12.10 16 36 H 0.14 2.55 7.21 -2.91 -0.02 2.52 16 37 H 0.16 1.68 6.28 -2.91 -0.02 1.66 16 Total: -1.00 -70.14 328.32 3.89 -66.25 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 1.04 Total: 14.30 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: 6.50 Total: 2.11 kcal Atomic # 7 Polarization: -84.66 SS G_CDS: -3.69 Total: -88.35 kcal Atomic # 8 Polarization: -43.09 SS G_CDS: -1.03 Total: -44.12 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.33 kcal Atomic # 16 Polarization: 8.44 SS G_CDS: -0.95 Total: 7.49 kcal Total: -70.14 3.89 -66.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172933211.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.577 kcal (2) G-P(sol) polarization free energy of solvation -70.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds