Wall clock time and date at job start Tue Mar 31 2020 11:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34097 * 126.09501 * 2 1 4 4 O 1.35128 * 107.29474 * 179.79457 * 3 2 1 5 5 C 1.34268 * 107.73151 * 0.37999 * 4 3 2 6 6 S 1.76203 * 125.72223 * 179.87339 * 5 4 3 7 7 C 1.81006 * 99.99652 * 359.69513 * 6 5 4 8 8 C 1.50701 * 109.47111 * 180.02562 * 7 6 5 9 9 O 1.21279 * 119.99968 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00330 * 179.97438 * 8 7 6 11 11 C 1.39233 * 120.00562 * 184.03078 * 10 8 7 12 12 C 1.39481 * 119.82903 * 324.50589 * 11 10 8 13 13 C 1.36376 * 120.16685 * 179.72044 * 12 11 10 14 14 C 1.40867 * 119.82863 * 0.56512 * 13 12 11 15 15 C 1.41159 * 120.16497 * 179.67951 * 14 13 12 16 16 H 1.07995 * 119.99645 * 214.80643 * 15 14 13 17 17 C 1.39902 * 119.99807 * 34.80615 * 15 14 13 18 18 N 1.30874 * 119.99928 * 355.56256 * 17 15 14 19 19 Si 1.86798 * 119.99648 * 175.55569 * 17 15 14 20 20 H 1.48493 * 109.47426 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46776 * 120.00494 * 19 17 15 22 22 H 1.48500 * 109.47046 * 239.99818 * 19 17 15 23 23 C 1.40868 * 119.67045 * 359.70600 * 14 13 12 24 24 C 1.36372 * 119.83089 * 359.97438 * 23 14 13 25 25 N 1.31122 * 108.55702 * 359.61326 * 5 4 3 26 26 H 1.08994 * 109.46932 * 269.98381 * 1 2 3 27 27 H 1.08991 * 109.46845 * 29.98982 * 1 2 3 28 28 H 1.08997 * 109.46931 * 149.98861 * 1 2 3 29 29 H 1.08003 * 126.35154 * 0.02562 * 3 2 1 30 30 H 1.08993 * 109.47235 * 59.99651 * 7 6 5 31 31 H 1.09008 * 109.47010 * 299.99440 * 7 6 5 32 32 H 0.97001 * 119.99486 * 4.30482 * 10 8 7 33 33 H 1.08002 * 119.92147 * 359.97438 * 12 11 10 34 34 H 1.08001 * 120.08766 * 180.25691 * 13 12 11 35 35 H 0.97000 * 119.99986 * 180.02562 * 18 17 15 36 36 H 1.08003 * 120.08339 * 179.97438 * 23 14 13 37 37 H 1.07995 * 119.91905 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2971 1.0836 0.0000 4 8 3.5762 0.6481 0.0046 5 6 3.5512 -0.6943 -0.0011 6 16 4.9623 -1.7496 -0.0015 7 6 6.2815 -0.5102 -0.0021 8 6 7.6205 -1.2018 -0.0032 9 8 7.6773 -2.4132 -0.0031 10 7 8.7548 -0.4740 -0.0043 11 6 9.9903 -1.1104 -0.0900 12 6 10.1804 -2.3433 0.5339 13 6 11.3859 -2.9754 0.4496 14 6 12.4441 -2.3744 -0.2599 15 6 13.6968 -3.0192 -0.3460 16 1 14.6052 -2.4352 -0.3534 17 6 13.7615 -4.4146 -0.4218 18 7 12.6676 -5.1266 -0.3254 19 14 15.4092 -5.2616 -0.6606 20 1 16.4841 -4.2401 -0.7391 21 1 15.6709 -6.1677 0.4865 22 1 15.3826 -6.0505 -1.9185 23 6 12.2460 -1.1264 -0.8826 24 6 11.0330 -0.5095 -0.7951 25 7 2.3006 -1.0884 -0.0006 26 1 -0.3633 -0.0003 1.0276 27 1 -0.3633 0.8900 -0.5136 28 1 -0.3633 -0.8899 -0.5140 29 1 1.9713 2.1133 0.0004 30 1 6.1948 0.1131 0.8878 31 1 6.1942 0.1130 -0.8922 32 1 8.7107 0.4929 0.0587 33 1 9.3697 -2.8005 1.0818 34 1 11.5305 -3.9319 0.9297 35 1 12.7125 -6.0941 -0.3776 36 1 13.0528 -0.6594 -1.4280 37 1 10.8797 0.4475 -1.2715 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188396194.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:07 Heat of formation + Delta-G solvation = 15.297880 kcal Electronic energy + Delta-G solvation = -22165.733806 eV Core-core repulsion = 18615.138223 eV Total energy + Delta-G solvation = -3550.595583 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.41537 -39.82549 -37.35718 -35.42383 -34.59548 -33.04707 -31.82855 -30.70877 -29.53350 -28.63940 -27.71030 -24.90933 -23.45309 -21.80141 -21.57815 -21.10857 -19.80787 -18.46513 -17.35074 -17.06305 -17.02735 -16.71815 -16.31716 -15.59257 -15.12386 -14.99079 -14.12367 -14.02435 -13.83901 -13.66239 -13.44553 -13.21014 -12.82932 -12.64767 -12.48338 -12.13845 -11.77886 -11.54347 -11.43898 -11.21156 -11.03520 -10.93823 -10.80552 -10.56880 -10.05636 -9.96660 -9.77839 -9.66143 -9.12489 -8.87399 -7.81524 -7.59184 -6.98311 -6.64185 -4.38744 0.65165 1.07201 1.43472 2.31563 2.39009 2.89219 3.01276 3.02739 3.08802 3.13370 3.20941 3.47729 3.95707 4.33662 4.52498 4.64201 4.70673 4.74901 4.95883 5.00659 5.22668 5.35307 5.44551 5.57154 5.60004 5.95051 6.05881 6.31105 6.64665 6.87369 6.98126 7.12812 7.22194 7.30920 7.53580 7.58468 7.86191 8.03315 8.04347 8.26601 8.50727 8.62843 8.88356 8.94134 10.26531 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.040279 B = 0.002176 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.983755 B =12867.039618 C =13446.268803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.005 4.005 3 C -0.083 4.083 4 O -0.203 6.203 5 C 0.154 3.846 6 S 0.150 5.850 7 C -0.172 4.172 8 C 0.517 3.483 9 O -0.511 6.511 10 N -0.640 5.640 11 C -0.003 4.003 12 C -0.091 4.091 13 C -0.145 4.145 14 C 0.102 3.898 15 C -0.461 4.461 16 H 0.077 0.923 17 C 0.068 3.932 18 N -0.804 5.804 19 Si 0.916 3.084 20 H -0.262 1.262 21 H -0.274 1.274 22 H -0.274 1.274 23 C -0.204 4.204 24 C -0.108 4.108 25 N -0.464 5.464 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.216 0.784 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.398 0.602 33 H 0.108 0.892 34 H 0.132 0.868 35 H 0.279 0.721 36 H 0.098 0.902 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.328 12.343 1.072 21.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.127 4.127 3 C -0.157 4.157 4 O -0.092 6.092 5 C -0.160 4.160 6 S 0.380 5.620 7 C -0.324 4.324 8 C 0.300 3.700 9 O -0.387 6.387 10 N -0.283 5.283 11 C -0.095 4.095 12 C -0.111 4.111 13 C -0.165 4.165 14 C 0.099 3.901 15 C -0.491 4.491 16 H 0.095 0.905 17 C -0.148 4.148 18 N -0.431 5.431 19 Si 0.741 3.259 20 H -0.186 1.186 21 H -0.199 1.199 22 H -0.199 1.199 23 C -0.224 4.224 24 C -0.129 4.129 25 N -0.197 5.197 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.232 0.768 30 H 0.140 0.860 31 H 0.141 0.859 32 H 0.231 0.769 33 H 0.126 0.874 34 H 0.149 0.851 35 H 0.090 0.910 36 H 0.116 0.884 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -17.411 9.422 1.055 19.825 hybrid contribution 0.642 2.331 -0.253 2.431 sum -16.769 11.753 0.802 20.494 Atomic orbital electron populations 1.20122 0.86255 1.03502 1.03035 1.21911 0.98228 0.88058 1.04457 1.24744 0.80058 1.00992 1.09911 1.84710 1.30828 1.22579 1.71086 1.28951 1.00615 0.82191 1.04224 1.87206 0.84800 0.98618 1.91389 1.23966 0.96369 1.03190 1.08875 1.19366 0.84209 0.87759 0.78633 1.90792 1.86213 1.13111 1.48546 1.42779 1.04518 1.09497 1.71539 1.17232 0.84212 0.98001 1.10100 1.20636 0.97532 0.94021 0.98899 1.21312 0.92555 1.01319 1.01294 1.17764 0.93710 0.90413 0.88209 1.19541 0.93589 0.91313 1.44676 0.90484 1.25920 0.98140 0.97845 0.92866 1.69789 1.28467 1.07618 1.37219 0.86137 0.81803 0.79426 0.78554 1.18585 1.19935 1.19947 1.20692 0.96100 0.99476 1.06167 1.20063 0.93956 0.99033 0.99808 1.70775 0.98789 1.30726 1.19456 0.90558 0.90608 0.90411 0.76798 0.85973 0.85918 0.76853 0.87427 0.85053 0.90993 0.88417 0.89051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.42 36.01 0.38 -0.10 16 2 C -0.01 -0.06 7.10 -82.79 -0.59 -0.64 16 3 C -0.08 -0.74 12.07 29.27 0.35 -0.39 16 4 O -0.20 -2.29 10.24 3.48 0.04 -2.26 16 5 C 0.15 2.02 8.35 52.46 0.44 2.46 16 6 S 0.15 2.02 21.45 -107.50 -2.31 -0.28 16 7 C -0.17 -1.96 5.76 36.01 0.21 -1.75 16 8 C 0.52 8.38 7.68 -10.99 -0.08 8.30 16 9 O -0.51 -10.64 13.30 5.56 0.07 -10.56 16 10 N -0.64 -10.31 5.30 -9.74 -0.05 -10.36 16 11 C 0.00 -0.07 6.30 -83.57 -0.53 -0.60 16 12 C -0.09 -2.19 8.61 -39.79 -0.34 -2.54 16 13 C -0.14 -3.81 8.62 -39.26 -0.34 -4.14 16 14 C 0.10 2.67 5.55 -106.80 -0.59 2.08 16 15 C -0.46 -12.08 9.02 -37.85 -0.34 -12.42 16 16 H 0.08 1.93 7.85 -52.49 -0.41 1.51 16 17 C 0.07 1.72 5.42 -17.34 -0.09 1.63 16 18 N -0.80 -21.20 10.60 55.55 0.59 -20.61 16 19 Si 0.92 18.88 29.56 -169.99 -5.03 13.85 16 20 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 22 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 23 C -0.20 -4.79 9.74 -39.26 -0.38 -5.18 16 24 C -0.11 -2.27 9.90 -39.79 -0.39 -2.66 16 25 N -0.46 -6.42 11.35 -10.12 -0.11 -6.53 16 26 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.22 0.93 8.06 -52.48 -0.42 0.51 16 30 H 0.12 1.09 8.14 -51.92 -0.42 0.67 16 31 H 0.12 1.13 8.14 -51.91 -0.42 0.71 16 32 H 0.40 4.68 8.82 -40.82 -0.36 4.32 16 33 H 0.11 2.60 6.25 -52.49 -0.33 2.27 16 34 H 0.13 3.63 6.13 -52.49 -0.32 3.31 16 35 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 36 H 0.10 2.13 8.06 -52.48 -0.42 1.70 16 37 H 0.09 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 339.88 15.07 5.12 5.12 Total: -1.00 -32.32 339.88 -7.93 -40.25 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -3.94 Total: 7.36 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: -2.31 Total: -15.97 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.42 Total: -37.50 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.11 Total: -12.82 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.31 Total: -0.28 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.32 -7.93 -40.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188396194.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.544 kcal (2) G-P(sol) polarization free energy of solvation -32.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds