Wall clock time and date at job start Tue Mar 31 2020 11:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34097 * 126.09501 * 2 1 4 4 O 1.35128 * 107.29474 * 179.79457 * 3 2 1 5 5 C 1.34268 * 107.73151 * 0.37999 * 4 3 2 6 6 S 1.76203 * 125.72223 * 179.87339 * 5 4 3 7 7 C 1.81006 * 99.99652 * 359.69513 * 6 5 4 8 8 C 1.50701 * 109.47111 * 180.02562 * 7 6 5 9 9 O 1.21279 * 119.99968 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00330 * 179.97438 * 8 7 6 11 11 C 1.39233 * 120.00562 * 184.03078 * 10 8 7 12 12 C 1.39481 * 119.82903 * 324.50589 * 11 10 8 13 13 C 1.36376 * 120.16685 * 179.72044 * 12 11 10 14 14 C 1.40867 * 119.82863 * 0.56512 * 13 12 11 15 15 C 1.41159 * 120.16497 * 179.67951 * 14 13 12 16 16 H 1.07995 * 119.99645 * 214.80643 * 15 14 13 17 17 C 1.39902 * 119.99807 * 34.80615 * 15 14 13 18 18 N 1.30874 * 119.99928 * 355.56256 * 17 15 14 19 19 Si 1.86798 * 119.99648 * 175.55569 * 17 15 14 20 20 H 1.48493 * 109.47426 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46776 * 120.00494 * 19 17 15 22 22 H 1.48500 * 109.47046 * 239.99818 * 19 17 15 23 23 C 1.40868 * 119.67045 * 359.70600 * 14 13 12 24 24 C 1.36372 * 119.83089 * 359.97438 * 23 14 13 25 25 N 1.31122 * 108.55702 * 359.61326 * 5 4 3 26 26 H 1.08994 * 109.46932 * 269.98381 * 1 2 3 27 27 H 1.08991 * 109.46845 * 29.98982 * 1 2 3 28 28 H 1.08997 * 109.46931 * 149.98861 * 1 2 3 29 29 H 1.08003 * 126.35154 * 0.02562 * 3 2 1 30 30 H 1.08993 * 109.47235 * 59.99651 * 7 6 5 31 31 H 1.09008 * 109.47010 * 299.99440 * 7 6 5 32 32 H 0.97001 * 119.99486 * 4.30482 * 10 8 7 33 33 H 1.08002 * 119.92147 * 359.97438 * 12 11 10 34 34 H 1.08001 * 120.08766 * 180.25691 * 13 12 11 35 35 H 0.97000 * 119.99986 * 180.02562 * 18 17 15 36 36 H 1.08003 * 120.08339 * 179.97438 * 23 14 13 37 37 H 1.07995 * 119.91905 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2971 1.0836 0.0000 4 8 3.5762 0.6481 0.0046 5 6 3.5512 -0.6943 -0.0011 6 16 4.9623 -1.7496 -0.0015 7 6 6.2815 -0.5102 -0.0021 8 6 7.6205 -1.2018 -0.0032 9 8 7.6773 -2.4132 -0.0031 10 7 8.7548 -0.4740 -0.0043 11 6 9.9903 -1.1104 -0.0900 12 6 10.1804 -2.3433 0.5339 13 6 11.3859 -2.9754 0.4496 14 6 12.4441 -2.3744 -0.2599 15 6 13.6968 -3.0192 -0.3460 16 1 14.6052 -2.4352 -0.3534 17 6 13.7615 -4.4146 -0.4218 18 7 12.6676 -5.1266 -0.3254 19 14 15.4092 -5.2616 -0.6606 20 1 16.4841 -4.2401 -0.7391 21 1 15.6709 -6.1677 0.4865 22 1 15.3826 -6.0505 -1.9185 23 6 12.2460 -1.1264 -0.8826 24 6 11.0330 -0.5095 -0.7951 25 7 2.3006 -1.0884 -0.0006 26 1 -0.3633 -0.0003 1.0276 27 1 -0.3633 0.8900 -0.5136 28 1 -0.3633 -0.8899 -0.5140 29 1 1.9713 2.1133 0.0004 30 1 6.1948 0.1131 0.8878 31 1 6.1942 0.1130 -0.8922 32 1 8.7107 0.4929 0.0587 33 1 9.3697 -2.8005 1.0818 34 1 11.5305 -3.9319 0.9297 35 1 12.7125 -6.0941 -0.3776 36 1 13.0528 -0.6594 -1.4280 37 1 10.8797 0.4475 -1.2715 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188396194.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:06 Heat of formation + Delta-G solvation = -7.608682 kcal Electronic energy + Delta-G solvation = -22166.727109 eV Core-core repulsion = 18615.138223 eV Total energy + Delta-G solvation = -3551.588886 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.22763 -41.30522 -39.10393 -36.26286 -36.21954 -34.77794 -32.56539 -32.04781 -31.35273 -30.24415 -28.37825 -26.67955 -24.35141 -23.39321 -22.89513 -22.40246 -21.33080 -19.47167 -19.23215 -18.38679 -18.02537 -17.86997 -17.32100 -17.05183 -16.65453 -15.82075 -15.73635 -15.31912 -15.07188 -14.92695 -14.45584 -14.20672 -14.09335 -13.96262 -13.84202 -13.55650 -13.32900 -13.04700 -12.87532 -12.65516 -12.33368 -12.29161 -11.96469 -11.81211 -11.68575 -11.65859 -11.30971 -10.90128 -10.59185 -10.52992 -9.45692 -8.81321 -8.72742 -8.50483 -6.33933 -0.31540 0.27327 0.52222 0.75636 1.13256 1.38937 1.39073 1.51504 1.54556 1.64550 2.13059 2.23459 2.31746 2.80734 3.55903 3.66302 3.69428 3.86068 3.87515 4.11804 4.38342 4.43846 4.48177 4.75891 4.79727 4.84943 4.89549 4.97694 5.11142 5.14426 5.32826 5.35964 5.39608 5.70550 5.83509 6.05148 6.13931 6.33827 6.50601 6.55564 6.70791 6.95429 7.00496 7.24415 8.42294 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.040279 B = 0.002176 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.983755 B =12867.039618 C =13446.268803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.035 4.035 3 C -0.063 4.063 4 O -0.204 6.204 5 C 0.141 3.859 6 S 0.102 5.898 7 C -0.148 4.148 8 C 0.517 3.483 9 O -0.561 6.561 10 N -0.630 5.630 11 C 0.017 3.983 12 C -0.107 4.107 13 C -0.170 4.170 14 C 0.066 3.934 15 C -0.494 4.494 16 H 0.080 0.920 17 C 0.021 3.979 18 N -0.846 5.846 19 Si 0.990 3.010 20 H -0.253 1.253 21 H -0.268 1.268 22 H -0.270 1.270 23 C -0.210 4.210 24 C -0.102 4.102 25 N -0.497 5.497 26 H 0.084 0.916 27 H 0.105 0.895 28 H 0.066 0.934 29 H 0.263 0.737 30 H 0.156 0.844 31 H 0.155 0.845 32 H 0.424 0.576 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.282 0.718 36 H 0.113 0.887 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.508 15.922 0.358 24.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.155 4.155 3 C -0.136 4.136 4 O -0.092 6.092 5 C -0.172 4.172 6 S 0.331 5.669 7 C -0.299 4.299 8 C 0.303 3.697 9 O -0.440 6.440 10 N -0.275 5.275 11 C -0.077 4.077 12 C -0.127 4.127 13 C -0.190 4.190 14 C 0.063 3.937 15 C -0.525 4.525 16 H 0.098 0.902 17 C -0.190 4.190 18 N -0.473 5.473 19 Si 0.811 3.189 20 H -0.176 1.176 21 H -0.193 1.193 22 H -0.195 1.195 23 C -0.230 4.230 24 C -0.122 4.122 25 N -0.232 5.232 26 H 0.103 0.897 27 H 0.124 0.876 28 H 0.085 0.915 29 H 0.279 0.721 30 H 0.173 0.827 31 H 0.172 0.828 32 H 0.263 0.737 33 H 0.117 0.883 34 H 0.122 0.878 35 H 0.093 0.907 36 H 0.131 0.869 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -18.612 13.070 0.349 22.746 hybrid contribution 0.736 1.395 -0.011 1.577 sum -17.876 14.464 0.338 22.998 Atomic orbital electron populations 1.20242 0.84022 1.04468 1.03886 1.22565 0.99857 0.87712 1.05412 1.25701 0.78760 1.02538 1.06613 1.84702 1.32070 1.21599 1.70803 1.28517 0.99938 0.82802 1.05980 1.87442 0.86677 1.00660 1.92127 1.23816 0.91988 1.02114 1.11990 1.20097 0.85671 0.87242 0.76666 1.90795 1.87171 1.15735 1.50265 1.42625 1.02796 1.10810 1.71308 1.17273 0.86251 0.96628 1.07523 1.20672 0.96499 0.95673 0.99824 1.21175 0.94043 1.01061 1.02760 1.18102 0.94005 0.92117 0.89449 1.19808 0.93852 0.92312 1.46530 0.90166 1.26856 1.01884 0.98239 0.92068 1.69912 1.30735 1.07940 1.38763 0.85028 0.77105 0.78227 0.78501 1.17636 1.19339 1.19535 1.20965 0.97776 0.98527 1.05684 1.20450 0.92510 1.00473 0.98769 1.70734 0.99717 1.32882 1.19831 0.89710 0.87600 0.91504 0.72091 0.82655 0.82755 0.73703 0.88348 0.87806 0.90748 0.86868 0.84221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.42 71.24 0.74 -0.02 16 2 C -0.03 -0.65 7.10 41.18 0.29 -0.36 16 3 C -0.06 -0.88 12.07 66.88 0.81 -0.08 16 4 O -0.20 -3.95 10.24 -10.45 -0.11 -4.06 16 5 C 0.14 3.52 8.35 130.35 1.09 4.61 16 6 S 0.10 2.69 21.45 -56.49 -1.21 1.48 16 7 C -0.15 -2.95 5.76 71.24 0.41 -2.54 16 8 C 0.52 15.89 7.68 87.66 0.67 16.56 16 9 O -0.56 -23.63 13.30 -3.03 -0.04 -23.67 16 10 N -0.63 -18.48 5.30 -303.12 -1.61 -20.09 16 11 C 0.02 0.69 6.30 38.57 0.24 0.93 16 12 C -0.11 -5.30 8.61 22.13 0.19 -5.11 16 13 C -0.17 -9.44 8.62 22.48 0.19 -9.24 16 14 C 0.07 3.56 5.55 -21.28 -0.12 3.44 16 15 C -0.49 -26.85 9.02 23.39 0.21 -26.64 16 16 H 0.08 4.12 7.85 -2.91 -0.02 4.09 16 17 C 0.02 1.09 5.42 85.24 0.46 1.56 16 18 N -0.85 -47.02 10.60 21.82 0.23 -46.79 16 19 Si 0.99 39.70 29.56 68.60 2.03 41.73 16 20 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 21 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 22 H -0.27 -10.55 7.11 99.48 0.71 -9.85 16 23 C -0.21 -9.69 9.74 22.48 0.22 -9.48 16 24 C -0.10 -4.01 9.90 22.13 0.22 -3.79 16 25 N -0.50 -13.37 11.35 -300.14 -3.41 -16.78 16 26 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.26 0.79 8.06 -2.91 -0.02 0.76 16 30 H 0.16 2.13 8.14 -2.40 -0.02 2.11 16 31 H 0.15 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.42 8.04 8.82 -92.71 -0.82 7.23 16 33 H 0.10 4.99 6.25 -2.91 -0.02 4.97 16 34 H 0.10 6.22 6.13 -2.91 -0.02 6.20 16 35 H 0.28 14.38 8.30 -92.71 -0.77 13.61 16 36 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 37 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -76.53 339.88 1.83 -74.70 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 0.31 Total: 23.64 kcal Atomic # 6 Polarization: -35.79 SS G_CDS: 5.63 Total: -30.16 kcal Atomic # 7 Polarization: -78.88 SS G_CDS: -4.78 Total: -83.66 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -0.15 Total: -27.73 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.73 kcal Atomic # 16 Polarization: 2.69 SS G_CDS: -1.21 Total: 1.48 kcal Total: -76.53 1.83 -74.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188396194.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.093 kcal (2) G-P(sol) polarization free energy of solvation -76.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds