Wall clock time and date at job start Tue Mar 31 2020 12:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 O 1.42895 * 112.94629 * 48.42918 * 9 7 2 11 11 C 1.53942 * 113.73113 * 276.71995 * 9 7 2 12 12 N 1.47958 * 86.18241 * 221.92438 * 11 9 7 13 13 C 1.46895 * 110.99863 * 137.58381 * 12 11 9 14 14 C 1.50705 * 109.47037 * 90.64034 * 13 12 11 15 15 C 1.36082 * 120.11482 * 259.72344 * 14 13 12 16 16 C 1.39433 * 121.04678 * 179.72785 * 15 14 13 17 17 Cl 1.73606 * 119.58047 * 180.26513 * 16 15 14 18 18 C 1.36282 * 120.84155 * 0.57491 * 16 15 14 19 19 C 1.40376 * 119.60721 * 359.71359 * 18 16 15 20 20 C 1.40780 * 121.37647 * 180.02562 * 19 18 16 21 21 C 1.36572 * 118.15325 * 179.97438 * 20 19 18 22 22 C 1.39329 * 119.93773 * 359.97438 * 21 20 19 23 23 N 1.31079 * 121.75445 * 359.97438 * 22 21 20 24 24 C 1.33685 * 121.32668 * 0.04406 * 23 22 21 25 25 C 1.47961 * 90.76178 * 24.68871 * 12 11 9 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 0.96697 * 114.00066 * 309.67107 * 10 9 7 28 28 H 1.08993 * 113.75791 * 336.24977 * 11 9 7 29 29 H 1.09005 * 113.75626 * 107.60779 * 11 9 7 30 30 H 1.08997 * 109.47442 * 210.63821 * 13 12 11 31 31 H 1.08996 * 109.47348 * 330.64174 * 13 12 11 32 32 H 1.07995 * 119.48283 * 0.02562 * 15 14 13 33 33 H 1.07995 * 120.19818 * 179.68512 * 18 16 15 34 34 H 1.07997 * 120.92639 * 359.94705 * 20 19 18 35 35 H 1.07999 * 120.02991 * 180.02562 * 21 20 19 36 36 H 1.08010 * 119.12249 * 179.97438 * 22 21 20 37 37 H 1.08996 * 113.76309 * 220.98440 * 25 12 11 38 38 H 1.09008 * 113.85816 * 89.63955 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 4.0682 -0.3216 0.9853 11 6 4.1316 -1.0282 -1.3992 12 7 5.0974 -2.0703 -0.9863 13 6 5.3281 -3.0336 -2.0711 14 6 6.4872 -2.5707 -2.9158 15 6 6.2600 -1.9402 -4.1002 16 6 7.3177 -1.4989 -4.8944 17 17 6.9841 -0.6928 -6.3953 18 6 8.6101 -1.6979 -4.5104 19 6 8.8805 -2.3501 -3.2972 20 6 10.2011 -2.5747 -2.8642 21 6 10.3885 -3.2151 -1.6726 22 6 9.2879 -3.6253 -0.9231 23 7 8.0596 -3.4137 -1.3286 24 6 7.8067 -2.7928 -2.4852 25 6 4.1311 -2.6032 -0.0006 26 1 -0.4850 0.8401 0.0004 27 1 3.7022 0.5733 0.9700 28 1 3.4728 -1.3367 -2.2108 29 1 4.5846 -0.0508 -1.5657 30 1 5.5557 -4.0113 -1.6466 31 1 4.4336 -3.1053 -2.6898 32 1 5.2444 -1.7748 -4.4281 33 1 9.4214 -1.3562 -5.1360 34 1 11.0427 -2.2499 -3.4580 35 1 11.3888 -3.4027 -1.3113 36 1 9.4513 -4.1310 0.0172 37 1 4.5837 -2.8845 0.9502 38 1 3.4714 -3.3728 -0.4015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189541316.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:57 Heat of formation + Delta-G solvation = 30.605234 kcal Electronic energy + Delta-G solvation = -23885.321531 eV Core-core repulsion = 20333.346018 eV Total energy + Delta-G solvation = -3551.975513 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.97326 -40.93522 -38.58773 -37.35740 -36.63525 -34.79362 -34.54286 -32.11594 -31.42774 -29.81994 -27.61698 -27.08816 -25.25258 -24.61895 -24.10303 -21.78695 -20.89750 -19.39796 -19.29141 -18.19152 -18.08248 -17.91824 -16.98928 -16.25004 -15.97214 -15.77683 -15.53258 -15.36065 -15.10114 -14.86624 -14.54983 -14.38704 -13.93051 -13.88640 -13.86083 -13.60376 -13.26434 -12.90010 -12.68662 -12.58399 -12.42719 -12.15839 -11.93055 -11.91523 -11.86013 -11.51027 -11.14875 -10.91815 -10.47698 -10.35453 -9.73219 -9.63190 -9.19065 -8.45841 -6.55112 -0.66413 -0.26591 0.95625 1.01698 1.19410 1.25948 1.34161 1.78162 2.14458 2.77619 2.93433 3.13993 3.33656 3.42890 3.60900 3.72566 3.91611 3.95469 4.00309 4.05785 4.10377 4.18575 4.22458 4.47041 4.51819 4.62270 4.66839 4.75699 4.87409 4.89202 4.95522 5.00845 5.11771 5.13825 5.25041 5.31756 5.42246 5.48552 5.79297 6.01942 6.18415 6.49650 6.75278 7.03618 7.12601 8.70098 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.013729 B = 0.004294 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.996961 B = 6518.415881 C = 7783.127858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.028 3.972 3 Si 0.918 3.082 4 H -0.255 1.255 5 H -0.240 1.240 6 H -0.281 1.281 7 C -0.545 4.545 8 H 0.052 0.948 9 C 0.186 3.814 10 O -0.558 6.558 11 C -0.019 4.019 12 N -0.461 5.461 13 C 0.068 3.932 14 C -0.044 4.044 15 C -0.105 4.105 16 C -0.037 4.037 17 Cl -0.062 7.062 18 C -0.080 4.080 19 C -0.112 4.112 20 C -0.055 4.055 21 C -0.165 4.165 22 C 0.123 3.877 23 N -0.493 5.493 24 C 0.121 3.879 25 C 0.034 3.966 26 H 0.272 0.728 27 H 0.349 0.651 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.055 0.945 32 H 0.137 0.863 33 H 0.170 0.830 34 H 0.177 0.823 35 H 0.178 0.822 36 H 0.181 0.819 37 H 0.083 0.917 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.520 -4.499 -10.319 26.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.173 4.173 3 Si 0.743 3.257 4 H -0.180 1.180 5 H -0.164 1.164 6 H -0.208 1.208 7 C -0.583 4.583 8 H 0.070 0.930 9 C 0.145 3.855 10 O -0.369 6.369 11 C -0.148 4.148 12 N -0.183 5.183 13 C -0.060 4.060 14 C -0.046 4.046 15 C -0.126 4.126 16 C -0.064 4.064 17 Cl -0.033 7.033 18 C -0.100 4.100 19 C -0.114 4.114 20 C -0.081 4.081 21 C -0.184 4.184 22 C -0.049 4.049 23 N -0.201 5.201 24 C 0.000 4.000 25 C -0.094 4.094 26 H 0.082 0.918 27 H 0.201 0.799 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.073 0.927 32 H 0.154 0.846 33 H 0.187 0.813 34 H 0.194 0.806 35 H 0.195 0.805 36 H 0.198 0.802 37 H 0.101 0.899 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 23.515 -4.938 -9.667 25.900 hybrid contribution -1.083 1.257 -0.935 1.904 sum 22.432 -3.682 -10.603 25.083 Atomic orbital electron populations 1.70005 1.07840 1.28606 1.50064 1.25780 0.95586 1.02743 0.93169 0.86341 0.79787 0.79615 0.79951 1.18030 1.16445 1.20776 1.21579 0.90484 0.94246 1.51995 0.93023 1.20613 0.90200 0.89411 0.85253 1.86466 1.67346 1.24219 1.58865 1.24905 0.93491 0.96873 0.99568 1.68504 1.32669 1.08007 1.09124 1.21449 0.94533 0.97038 0.92936 1.19406 0.93350 0.97877 0.93926 1.20756 0.99652 0.98189 0.93994 1.20594 0.94709 1.01097 0.90008 1.98373 1.95839 1.77999 1.31069 1.21122 0.95742 0.97625 0.95499 1.18950 0.95342 1.01207 0.95948 1.21853 0.95089 0.94717 0.96437 1.22319 1.01950 0.98859 0.95269 1.23645 0.87243 0.94095 0.99961 1.68072 1.25042 1.13634 1.13362 1.18855 0.93071 0.96659 0.91427 1.23903 0.92691 0.95583 0.97221 0.91840 0.79917 0.90763 0.91400 0.89395 0.92706 0.84554 0.81300 0.80578 0.80488 0.80221 0.89857 0.90216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.79 13.96 21.45 0.30 -55.50 16 2 C 0.03 1.56 5.47 84.66 0.46 2.03 16 3 Si 0.92 41.96 24.34 68.60 1.67 43.63 16 4 H -0.25 -11.06 7.06 99.48 0.70 -10.35 16 5 H -0.24 -10.39 5.27 99.48 0.52 -9.86 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.55 -30.75 9.20 25.60 0.24 -30.52 16 8 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 9 C 0.19 9.08 1.05 -10.89 -0.01 9.07 16 10 O -0.56 -27.96 13.32 -148.98 -1.98 -29.95 16 11 C -0.02 -0.82 6.54 86.41 0.57 -0.26 16 12 N -0.46 -18.54 6.14 -915.39 -5.62 -24.16 16 13 C 0.07 2.32 4.60 85.56 0.39 2.72 16 14 C -0.04 -1.38 5.45 -19.80 -0.11 -1.48 16 15 C -0.10 -2.93 9.34 22.06 0.21 -2.72 16 16 C -0.04 -0.89 6.28 22.10 0.14 -0.75 16 17 Cl -0.06 -1.31 28.92 -2.72 -0.08 -1.39 16 18 C -0.08 -1.62 9.52 22.33 0.21 -1.41 16 19 C -0.11 -2.53 5.74 -21.28 -0.12 -2.65 16 20 C -0.06 -0.83 9.90 22.50 0.22 -0.60 16 21 C -0.16 -2.27 10.03 22.14 0.22 -2.05 16 22 C 0.12 2.47 11.14 85.07 0.95 3.42 16 23 N -0.49 -14.39 9.60 -188.63 -1.81 -16.20 16 24 C 0.12 3.56 6.59 40.29 0.27 3.83 16 25 C 0.03 1.47 7.33 86.41 0.63 2.11 16 26 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 27 H 0.35 16.56 3.32 -74.06 -0.25 16.32 16 28 H 0.07 3.16 7.43 -2.39 -0.02 3.14 16 29 H 0.07 2.98 6.97 -2.38 -0.02 2.96 16 30 H 0.09 2.93 7.81 -2.39 -0.02 2.91 16 31 H 0.05 1.79 7.21 -2.39 -0.02 1.78 16 32 H 0.14 3.69 8.00 -2.91 -0.02 3.67 16 33 H 0.17 2.21 8.06 -2.91 -0.02 2.18 16 34 H 0.18 1.20 8.06 -2.91 -0.02 1.18 16 35 H 0.18 0.96 8.06 -2.91 -0.02 0.94 16 36 H 0.18 2.56 8.06 -2.91 -0.02 2.54 16 37 H 0.08 3.50 8.14 -2.39 -0.02 3.48 16 38 H 0.08 3.25 7.88 -2.38 -0.02 3.23 16 Total: -1.00 -70.38 329.25 -2.60 -72.98 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: 0.67 Total: 29.86 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: 4.27 Total: -19.27 kcal Atomic # 7 Polarization: -88.72 SS G_CDS: -7.14 Total: -95.85 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -1.98 Total: -29.95 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 1.67 Total: 43.63 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -0.08 Total: -1.39 kcal Total: -70.38 -2.60 -72.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189541316.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.583 kcal (2) G-P(sol) polarization free energy of solvation -70.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds