Wall clock time and date at job start Tue Mar 31 2020 12:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86797 * 119.99831 * 2 1 4 4 H 1.48501 * 109.47470 * 265.18154 * 3 2 1 5 5 H 1.48513 * 109.47062 * 25.17647 * 3 2 1 6 6 H 1.48497 * 109.47265 * 145.17801 * 3 2 1 7 7 C 1.38948 * 120.00263 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99962 * 333.14180 * 7 2 1 9 9 N 1.37103 * 119.99996 * 153.14157 * 7 2 1 10 10 C 1.34774 * 119.99663 * 318.23745 * 9 7 2 11 11 O 1.21293 * 120.00633 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99681 * 179.97438 * 10 9 7 13 13 C 1.50699 * 109.47203 * 180.02562 * 12 10 9 14 14 C 1.34219 * 126.50528 * 265.02327 * 13 12 10 15 15 N 1.36851 * 109.92378 * 179.97438 * 14 13 12 16 16 H 0.97001 * 125.06969 * 179.97438 * 15 14 13 17 17 C 1.37714 * 109.87440 * 0.02562 * 15 14 13 18 18 C 1.39133 * 133.41889 * 179.97438 * 17 15 14 19 19 C 1.37720 * 119.94262 * 180.02562 * 18 17 15 20 20 C 1.38839 * 120.68289 * 359.97438 * 19 18 17 21 21 C 1.37722 * 120.36767 * 0.02562 * 20 19 18 22 22 Cl 1.73603 * 120.18297 * 180.02562 * 21 20 19 23 23 C 1.39739 * 119.63276 * 359.72136 * 21 20 19 24 24 C 1.46495 * 119.99690 * 138.24071 * 9 7 2 25 25 C 1.53001 * 117.50203 * 3.17497 * 24 9 7 26 26 C 1.52996 * 117.49905 * 294.51398 * 24 9 7 27 27 H 0.96998 * 120.00262 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.47130 * 300.00334 * 12 10 9 29 29 H 1.08998 * 109.47439 * 60.00046 * 12 10 9 30 30 H 1.08008 * 125.04115 * 0.02562 * 14 13 12 31 31 H 1.08003 * 120.02980 * 359.97438 * 18 17 15 32 32 H 1.08000 * 119.65619 * 179.97438 * 19 18 17 33 33 H 1.07998 * 119.81287 * 179.97438 * 20 19 18 34 34 H 1.09008 * 115.54604 * 148.84795 * 24 9 7 35 35 H 1.08994 * 117.49947 * 0.02562 * 25 24 9 36 36 H 1.08996 * 117.49561 * 145.02266 * 25 24 9 37 37 H 1.09007 * 117.50019 * 214.98155 * 26 24 9 38 38 H 1.09002 * 117.50194 * 359.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.5974 1.9877 -1.3951 5 1 1.3981 2.6800 0.5957 6 1 3.4909 1.4718 0.7995 7 6 2.0089 -1.2033 -0.0005 8 1 1.5564 -2.0883 0.4216 9 7 3.2690 -1.2670 -0.5370 10 6 3.5434 -0.6264 -1.6906 11 8 2.6759 0.0069 -2.2540 12 6 4.9287 -0.6960 -2.2799 13 6 4.9707 0.0989 -3.5595 14 6 4.8034 -0.3792 -4.8024 15 7 4.9081 0.6384 -5.7115 16 1 4.8238 0.5379 -6.6726 17 6 5.1520 1.8262 -5.0587 18 6 5.3393 3.1348 -5.4924 19 6 5.5714 4.1362 -4.5759 20 6 5.6207 3.8555 -3.2171 21 6 5.4381 2.5674 -2.7652 22 17 5.5000 2.2219 -1.0650 23 6 5.1964 1.5412 -3.6823 24 6 4.3170 -2.0315 0.1437 25 6 3.9244 -2.7970 1.4089 26 6 4.7793 -1.5316 1.5138 27 1 -0.4850 0.8400 0.0004 28 1 5.6462 -0.2819 -1.5715 29 1 5.1829 -1.7351 -2.4889 30 1 4.6135 -1.4135 -5.0486 31 1 5.3036 3.3651 -6.5470 32 1 5.7166 5.1503 -4.9177 33 1 5.8040 4.6515 -2.5107 34 1 5.0663 -2.4838 -0.5061 35 1 2.8863 -2.7322 1.7346 36 1 4.4157 -3.7527 1.5917 37 1 5.8326 -1.6553 1.7656 38 1 4.3040 -0.6336 1.9086 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292596934.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:34 Heat of formation + Delta-G solvation = 66.784064 kcal Electronic energy + Delta-G solvation = -24852.571249 eV Core-core repulsion = 21302.164568 eV Total energy + Delta-G solvation = -3550.406681 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.14815 -38.80733 -37.07445 -36.26435 -35.84916 -32.98676 -32.38599 -31.29190 -29.83880 -29.26390 -27.10718 -24.36320 -22.76116 -21.88859 -21.83029 -21.32919 -19.90470 -18.74992 -17.66627 -16.69826 -16.38273 -16.02895 -15.54394 -15.20336 -14.50470 -14.34924 -14.26094 -13.92362 -13.81880 -13.37733 -12.97593 -12.69760 -12.63367 -12.24573 -12.13827 -11.87918 -11.52638 -11.40645 -11.18414 -10.94601 -10.84747 -10.55620 -10.39612 -10.10989 -9.92124 -9.87620 -9.51389 -9.19539 -8.38523 -8.24979 -8.14247 -7.40158 -7.29510 -6.12065 -3.80065 1.11110 1.64905 2.49118 2.84528 3.23109 3.46654 3.59541 3.81391 3.88838 3.94659 4.56114 4.61802 4.76604 4.84248 4.94015 5.13482 5.20205 5.25486 5.34611 5.52653 5.61676 5.68187 5.69489 5.75819 5.83159 5.88181 5.92887 6.06163 6.24908 6.25139 6.40059 6.46503 6.51256 6.68345 6.78306 6.88911 6.94077 7.17795 7.63760 7.95660 8.14228 8.93901 9.11841 9.57795 10.03818 10.93783 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.015252 B = 0.006033 C = 0.005714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.381963 B = 4640.410870 C = 4899.268917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.103 3.897 3 Si 0.879 3.121 4 H -0.238 1.238 5 H -0.308 1.308 6 H -0.274 1.274 7 C -0.353 4.353 8 H 0.092 0.908 9 N -0.441 5.441 10 C 0.464 3.536 11 O -0.529 6.529 12 C -0.071 4.071 13 C -0.122 4.122 14 C 0.056 3.944 15 N -0.594 5.594 16 H 0.415 0.585 17 C 0.108 3.892 18 C -0.131 4.131 19 C -0.093 4.093 20 C -0.147 4.147 21 C 0.019 3.981 22 Cl -0.060 7.060 23 C -0.084 4.084 24 C 0.065 3.935 25 C -0.174 4.174 26 C -0.202 4.202 27 H 0.269 0.731 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.172 0.828 31 H 0.122 0.878 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.103 2.112 -8.843 17.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.107 4.107 3 Si 0.708 3.292 4 H -0.162 1.162 5 H -0.237 1.237 6 H -0.200 1.200 7 C -0.479 4.479 8 H 0.109 0.891 9 N -0.163 5.163 10 C 0.253 3.747 11 O -0.408 6.408 12 C -0.112 4.112 13 C -0.129 4.129 14 C -0.069 4.069 15 N -0.197 5.197 16 H 0.252 0.748 17 C 0.000 4.000 18 C -0.152 4.152 19 C -0.113 4.113 20 C -0.167 4.167 21 C -0.008 4.008 22 Cl -0.031 7.031 23 C -0.090 4.090 24 C -0.041 4.041 25 C -0.212 4.212 26 C -0.241 4.241 27 H 0.079 0.921 28 H 0.108 0.892 29 H 0.104 0.896 30 H 0.189 0.811 31 H 0.140 0.860 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 14.433 2.422 -9.123 17.245 hybrid contribution 0.210 0.742 -0.031 0.771 sum 14.643 3.164 -9.154 17.556 Atomic orbital electron populations 1.69836 1.07005 1.27994 1.44625 1.25208 0.94604 0.99093 0.91802 0.87088 0.79303 0.82565 0.80278 1.16203 1.23704 1.19951 1.18595 0.88838 0.96701 1.43730 0.89078 1.43130 1.08671 1.46108 1.18388 1.20043 0.89210 0.84022 0.81455 1.90609 1.47820 1.41697 1.60651 1.20129 0.97899 0.99282 0.93841 1.19709 1.08350 0.91029 0.93810 1.21523 1.03941 0.93301 0.88165 1.41595 1.63923 1.05438 1.08723 0.74790 1.18037 1.03189 0.87778 0.90988 1.19995 1.06103 0.89404 0.99718 1.20626 1.00300 0.98540 0.91803 1.20743 1.05301 0.94473 0.96216 1.20404 1.02077 0.93602 0.84713 1.98394 1.96322 1.95298 1.13113 1.18712 1.05473 0.93420 0.91388 1.21831 0.94357 0.99911 0.87961 1.23106 1.01952 0.94417 1.01686 1.23276 0.98666 0.99137 1.03012 0.92092 0.89184 0.89593 0.81111 0.86002 0.85137 0.85236 0.87361 0.87262 0.89646 0.89749 0.88734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -27.17 13.96 55.50 0.77 -26.39 16 2 C 0.10 3.11 4.61 -17.47 -0.08 3.03 16 3 Si 0.88 24.49 23.54 -169.99 -4.00 20.49 16 4 H -0.24 -6.91 6.04 56.52 0.34 -6.57 16 5 H -0.31 -8.67 7.11 56.52 0.40 -8.27 16 6 H -0.27 -7.24 6.87 56.52 0.39 -6.85 16 7 C -0.35 -10.07 8.59 -14.93 -0.13 -10.20 16 8 H 0.09 2.70 7.02 -52.49 -0.37 2.33 16 9 N -0.44 -10.71 2.48 -107.73 -0.27 -10.98 16 10 C 0.46 11.16 6.03 -10.99 -0.07 11.09 16 11 O -0.53 -15.00 11.89 5.55 0.07 -14.94 16 12 C -0.07 -1.31 4.24 -29.04 -0.12 -1.43 16 13 C -0.12 -2.20 4.81 -102.72 -0.49 -2.69 16 14 C 0.06 0.81 11.73 -16.73 -0.20 0.62 16 15 N -0.59 -7.66 6.07 -10.65 -0.06 -7.72 16 16 H 0.42 3.66 8.96 -40.82 -0.37 3.30 16 17 C 0.11 1.66 7.27 -83.99 -0.61 1.05 16 18 C -0.13 -1.69 10.07 -39.44 -0.40 -2.09 16 19 C -0.09 -1.18 10.01 -39.55 -0.40 -1.58 16 20 C -0.15 -2.23 9.81 -39.55 -0.39 -2.61 16 21 C 0.02 0.35 6.35 -39.21 -0.25 0.10 16 22 Cl -0.06 -1.17 24.40 -51.86 -1.27 -2.43 16 23 C -0.08 -1.55 6.21 -105.11 -0.65 -2.20 16 24 C 0.07 1.25 5.87 -67.93 -0.40 0.85 16 25 C -0.17 -3.06 9.81 -26.69 -0.26 -3.32 16 26 C -0.20 -3.60 10.36 -26.70 -0.28 -3.88 16 27 H 0.27 8.11 8.31 -40.82 -0.34 7.77 16 28 H 0.09 1.62 6.59 -51.93 -0.34 1.28 16 29 H 0.09 1.30 7.56 -51.93 -0.39 0.91 16 30 H 0.17 1.93 8.06 -52.48 -0.42 1.51 16 31 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 32 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.13 1.69 8.06 -52.49 -0.42 1.26 16 34 H 0.11 1.70 6.96 -51.92 -0.36 1.34 16 35 H 0.11 2.20 6.52 -51.93 -0.34 1.86 16 36 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.08 1.23 8.14 -51.92 -0.42 0.81 16 38 H 0.09 1.95 8.14 -51.93 -0.42 1.53 16 LS Contribution 326.70 15.07 4.92 4.92 Total: -1.00 -36.89 326.70 -8.89 -45.78 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -4.34 Total: 4.54 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -4.72 Total: -13.27 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: 0.44 Total: -45.09 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: 0.07 Total: -14.94 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: -4.00 Total: 20.49 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -1.27 Total: -2.43 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -36.89 -8.89 -45.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292596934.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.567 kcal (2) G-P(sol) polarization free energy of solvation -36.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds