Wall clock time and date at job start Tue Mar 31 2020 12:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86797 * 119.99831 * 2 1 4 4 H 1.48501 * 109.47470 * 265.18154 * 3 2 1 5 5 H 1.48513 * 109.47062 * 25.17647 * 3 2 1 6 6 H 1.48497 * 109.47265 * 145.17801 * 3 2 1 7 7 C 1.38948 * 120.00263 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99962 * 333.14180 * 7 2 1 9 9 N 1.37103 * 119.99996 * 153.14157 * 7 2 1 10 10 C 1.34774 * 119.99663 * 318.23745 * 9 7 2 11 11 O 1.21293 * 120.00633 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99681 * 179.97438 * 10 9 7 13 13 C 1.50699 * 109.47203 * 180.02562 * 12 10 9 14 14 C 1.34219 * 126.50528 * 265.02327 * 13 12 10 15 15 N 1.36851 * 109.92378 * 179.97438 * 14 13 12 16 16 H 0.97001 * 125.06969 * 179.97438 * 15 14 13 17 17 C 1.37714 * 109.87440 * 0.02562 * 15 14 13 18 18 C 1.39133 * 133.41889 * 179.97438 * 17 15 14 19 19 C 1.37720 * 119.94262 * 180.02562 * 18 17 15 20 20 C 1.38839 * 120.68289 * 359.97438 * 19 18 17 21 21 C 1.37722 * 120.36767 * 0.02562 * 20 19 18 22 22 Cl 1.73603 * 120.18297 * 180.02562 * 21 20 19 23 23 C 1.39739 * 119.63276 * 359.72136 * 21 20 19 24 24 C 1.46495 * 119.99690 * 138.24071 * 9 7 2 25 25 C 1.53001 * 117.50203 * 3.17497 * 24 9 7 26 26 C 1.52996 * 117.49905 * 294.51398 * 24 9 7 27 27 H 0.96998 * 120.00262 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.47130 * 300.00334 * 12 10 9 29 29 H 1.08998 * 109.47439 * 60.00046 * 12 10 9 30 30 H 1.08008 * 125.04115 * 0.02562 * 14 13 12 31 31 H 1.08003 * 120.02980 * 359.97438 * 18 17 15 32 32 H 1.08000 * 119.65619 * 179.97438 * 19 18 17 33 33 H 1.07998 * 119.81287 * 179.97438 * 20 19 18 34 34 H 1.09008 * 115.54604 * 148.84795 * 24 9 7 35 35 H 1.08994 * 117.49947 * 0.02562 * 25 24 9 36 36 H 1.08996 * 117.49561 * 145.02266 * 25 24 9 37 37 H 1.09007 * 117.50019 * 214.98155 * 26 24 9 38 38 H 1.09002 * 117.50194 * 359.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.5974 1.9877 -1.3951 5 1 1.3981 2.6800 0.5957 6 1 3.4909 1.4718 0.7995 7 6 2.0089 -1.2033 -0.0005 8 1 1.5564 -2.0883 0.4216 9 7 3.2690 -1.2670 -0.5370 10 6 3.5434 -0.6264 -1.6906 11 8 2.6759 0.0069 -2.2540 12 6 4.9287 -0.6960 -2.2799 13 6 4.9707 0.0989 -3.5595 14 6 4.8034 -0.3792 -4.8024 15 7 4.9081 0.6384 -5.7115 16 1 4.8238 0.5379 -6.6726 17 6 5.1520 1.8262 -5.0587 18 6 5.3393 3.1348 -5.4924 19 6 5.5714 4.1362 -4.5759 20 6 5.6207 3.8555 -3.2171 21 6 5.4381 2.5674 -2.7652 22 17 5.5000 2.2219 -1.0650 23 6 5.1964 1.5412 -3.6823 24 6 4.3170 -2.0315 0.1437 25 6 3.9244 -2.7970 1.4089 26 6 4.7793 -1.5316 1.5138 27 1 -0.4850 0.8400 0.0004 28 1 5.6462 -0.2819 -1.5715 29 1 5.1829 -1.7351 -2.4889 30 1 4.6135 -1.4135 -5.0486 31 1 5.3036 3.3651 -6.5470 32 1 5.7166 5.1503 -4.9177 33 1 5.8040 4.6515 -2.5107 34 1 5.0663 -2.4838 -0.5061 35 1 2.8863 -2.7322 1.7346 36 1 4.4157 -3.7527 1.5917 37 1 5.8326 -1.6553 1.7656 38 1 4.3040 -0.6336 1.9086 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292596934.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:33 Heat of formation + Delta-G solvation = 42.131922 kcal Electronic energy + Delta-G solvation = -24853.640246 eV Core-core repulsion = 21302.164568 eV Total energy + Delta-G solvation = -3551.475678 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.26026 -40.60341 -38.23291 -37.90421 -37.10770 -34.93123 -33.83499 -33.23705 -31.08220 -30.36463 -28.55067 -26.27897 -23.85430 -23.38891 -22.94050 -22.88451 -21.52803 -20.22961 -18.92366 -18.52087 -17.80017 -17.42410 -17.14439 -16.64877 -15.97236 -15.75842 -15.49024 -15.40698 -15.32568 -15.01273 -14.74964 -14.53263 -13.94441 -13.63129 -13.52732 -13.31415 -13.11684 -12.95530 -12.79328 -12.39078 -12.24191 -12.10066 -12.05850 -11.87737 -11.61959 -11.47411 -11.17100 -10.66798 -10.46799 -10.12620 -9.26797 -9.24458 -8.56702 -8.40715 -6.06485 -0.00273 0.54919 1.17718 1.26612 1.35623 1.54555 1.67299 2.09761 2.23178 2.43330 2.72241 2.86009 3.03904 3.28783 3.78487 3.93091 4.04980 4.09479 4.12074 4.19654 4.26353 4.34688 4.36716 4.51507 4.61205 4.68500 4.77157 4.81651 4.90547 5.04582 5.07123 5.27969 5.39593 5.41675 5.48797 5.62027 5.69552 5.73638 5.94825 6.07693 6.73565 6.87672 7.04941 7.47218 8.08472 8.65797 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.015252 B = 0.006033 C = 0.005714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.381963 B = 4640.410870 C = 4899.268917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.055 3.945 3 Si 0.932 3.068 4 H -0.256 1.256 5 H -0.320 1.320 6 H -0.261 1.261 7 C -0.337 4.337 8 H 0.069 0.931 9 N -0.459 5.459 10 C 0.463 3.537 11 O -0.578 6.578 12 C -0.055 4.055 13 C -0.175 4.175 14 C 0.077 3.923 15 N -0.577 5.577 16 H 0.436 0.564 17 C 0.092 3.908 18 C -0.120 4.120 19 C -0.094 4.094 20 C -0.151 4.151 21 C -0.020 4.020 22 Cl -0.089 7.089 23 C -0.119 4.119 24 C 0.047 3.953 25 C -0.166 4.166 26 C -0.193 4.193 27 H 0.267 0.733 28 H 0.093 0.907 29 H 0.124 0.876 30 H 0.205 0.795 31 H 0.162 0.838 32 H 0.171 0.829 33 H 0.142 0.858 34 H 0.153 0.847 35 H 0.074 0.926 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.120 1.674 -11.125 21.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.149 4.149 3 Si 0.761 3.239 4 H -0.182 1.182 5 H -0.249 1.249 6 H -0.186 1.186 7 C -0.463 4.463 8 H 0.087 0.913 9 N -0.181 5.181 10 C 0.254 3.746 11 O -0.460 6.460 12 C -0.096 4.096 13 C -0.182 4.182 14 C -0.050 4.050 15 N -0.182 5.182 16 H 0.277 0.723 17 C -0.017 4.017 18 C -0.141 4.141 19 C -0.113 4.113 20 C -0.171 4.171 21 C -0.047 4.047 22 Cl -0.060 7.060 23 C -0.125 4.125 24 C -0.058 4.058 25 C -0.203 4.203 26 C -0.232 4.232 27 H 0.076 0.924 28 H 0.111 0.889 29 H 0.142 0.858 30 H 0.222 0.778 31 H 0.179 0.821 32 H 0.188 0.812 33 H 0.160 0.840 34 H 0.170 0.830 35 H 0.092 0.908 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 17.498 1.973 -11.410 20.983 hybrid contribution -0.669 0.826 0.549 1.196 sum 16.829 2.799 -10.861 20.224 Atomic orbital electron populations 1.69922 1.08089 1.28113 1.48298 1.25767 0.95010 1.01428 0.92723 0.86252 0.78557 0.80061 0.79016 1.18167 1.24914 1.18587 1.18521 0.90901 0.95254 1.41660 0.91338 1.43329 1.08558 1.47002 1.19237 1.21079 0.91022 0.81827 0.80664 1.90569 1.49979 1.43507 1.61909 1.20004 0.93533 1.01823 0.94219 1.19844 1.12275 0.91453 0.94664 1.22014 1.00658 0.94808 0.87472 1.41593 1.62520 1.04406 1.09666 0.72339 1.18376 1.03733 0.89307 0.90236 1.20515 1.03542 0.88200 1.01803 1.21115 0.99073 1.00524 0.90565 1.21114 1.04270 0.93739 0.97938 1.20711 1.05361 0.95108 0.83472 1.98357 1.96644 1.95545 1.15459 1.19101 1.06472 0.93938 0.92979 1.22258 0.94154 1.00306 0.89036 1.23140 1.00545 0.96415 1.00235 1.23286 1.00743 0.97757 1.01417 0.92433 0.88893 0.85837 0.77815 0.82056 0.81180 0.84039 0.82952 0.90763 0.85196 0.85453 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -60.00 13.96 21.66 0.30 -59.70 16 2 C 0.06 3.47 4.61 84.93 0.39 3.86 16 3 Si 0.93 53.38 23.54 68.60 1.61 55.00 16 4 H -0.26 -15.42 6.04 99.48 0.60 -14.82 16 5 H -0.32 -18.49 7.11 99.48 0.71 -17.78 16 6 H -0.26 -14.03 6.87 99.48 0.68 -13.34 16 7 C -0.34 -19.76 8.59 84.04 0.72 -19.04 16 8 H 0.07 4.25 7.02 -2.91 -0.02 4.23 16 9 N -0.46 -22.24 2.48 -613.14 -1.52 -23.76 16 10 C 0.46 22.13 6.03 87.66 0.53 22.66 16 11 O -0.58 -33.35 11.89 -3.07 -0.04 -33.39 16 12 C -0.06 -1.96 4.24 29.10 0.12 -1.83 16 13 C -0.18 -6.04 4.81 -18.63 -0.09 -6.13 16 14 C 0.08 2.03 11.73 82.99 0.97 3.01 16 15 N -0.58 -13.02 6.07 -187.61 -1.14 -14.16 16 16 H 0.44 5.96 8.96 -92.71 -0.83 5.13 16 17 C 0.09 2.59 7.27 39.02 0.28 2.87 16 18 C -0.12 -2.65 10.07 22.36 0.23 -2.43 16 19 C -0.09 -2.08 10.01 22.29 0.22 -1.86 16 20 C -0.15 -4.37 9.81 22.29 0.22 -4.15 16 21 C -0.02 -0.71 6.35 22.51 0.14 -0.57 16 22 Cl -0.09 -3.47 24.40 -2.72 -0.07 -3.54 16 23 C -0.12 -4.27 6.21 -20.18 -0.13 -4.40 16 24 C 0.05 1.69 5.87 44.99 0.26 1.95 16 25 C -0.17 -5.52 9.81 30.62 0.30 -5.22 16 26 C -0.19 -6.50 10.36 30.62 0.32 -6.18 16 27 H 0.27 16.93 8.31 -92.71 -0.77 16.16 16 28 H 0.09 3.22 6.59 -2.38 -0.02 3.20 16 29 H 0.12 3.28 7.56 -2.39 -0.02 3.27 16 30 H 0.21 3.76 8.06 -2.91 -0.02 3.74 16 31 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 32 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 33 H 0.14 3.56 8.06 -2.91 -0.02 3.53 16 34 H 0.15 4.11 6.96 -2.38 -0.02 4.10 16 35 H 0.07 3.02 6.52 -2.39 -0.02 3.01 16 36 H 0.13 3.16 8.14 -2.39 -0.02 3.14 16 37 H 0.13 3.19 8.14 -2.38 -0.02 3.17 16 38 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -87.16 326.70 3.81 -83.35 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 0.15 Total: 13.64 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: 4.50 Total: -17.44 kcal Atomic # 7 Polarization: -95.27 SS G_CDS: -2.35 Total: -97.63 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -0.04 Total: -33.39 kcal Atomic # 14 Polarization: 53.38 SS G_CDS: 1.61 Total: 55.00 kcal Atomic # 17 Polarization: -3.47 SS G_CDS: -0.07 Total: -3.54 kcal Total: -87.16 3.81 -83.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292596934.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.487 kcal (2) G-P(sol) polarization free energy of solvation -87.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds