Wall clock time and date at job start Tue Mar 31 2020 11:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36594 * 118.87884 * 2 1 4 4 C 1.34318 * 122.37198 * 180.02562 * 3 2 1 5 5 C 1.46303 * 119.44073 * 359.97438 * 4 3 2 6 6 C 1.40172 * 121.94475 * 180.02562 * 5 4 3 7 7 N 1.39787 * 120.30226 * 0.24532 * 6 5 4 8 8 C 1.34776 * 119.99587 * 145.04498 * 7 6 5 9 9 O 1.21294 * 120.00264 * 4.48749 * 8 7 6 10 10 C 1.50696 * 119.99988 * 184.48093 * 8 7 6 11 11 S 1.81000 * 109.47337 * 180.02562 * 10 8 7 12 12 C 1.76207 * 100.00201 * 180.02562 * 11 10 8 13 13 H 1.08000 * 119.99595 * 359.97438 * 12 11 10 14 14 C 1.38791 * 120.00006 * 180.02562 * 12 11 10 15 15 N 1.31639 * 120.00150 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00126 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46966 * 89.99890 * 16 14 12 18 18 H 1.48494 * 109.47043 * 209.99952 * 16 14 12 19 19 H 1.48499 * 109.46695 * 330.00123 * 16 14 12 20 20 C 1.38336 * 119.38984 * 179.97438 * 6 5 4 21 21 C 1.38810 * 120.66348 * 359.97438 * 20 6 5 22 22 C 1.37731 * 120.82246 * 0.02562 * 21 20 6 23 23 C 1.39520 * 119.69294 * 0.02562 * 22 21 20 24 24 C 1.34775 * 118.87276 * 180.02562 * 2 1 3 25 25 O 1.21792 * 120.38215 * 359.95780 * 24 2 1 26 26 H 1.09004 * 109.46622 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.46977 * 120.00233 * 1 2 3 28 28 H 1.08994 * 109.47036 * 240.00279 * 1 2 3 29 29 H 1.08003 * 118.81436 * 359.97438 * 3 2 1 30 30 H 1.08005 * 120.28060 * 179.97438 * 4 3 2 31 31 H 0.96994 * 120.00052 * 325.04962 * 7 6 5 32 32 H 1.09000 * 109.47368 * 300.00430 * 10 8 7 33 33 H 1.09002 * 109.47182 * 60.00375 * 10 8 7 34 34 H 0.97004 * 119.99604 * 180.02562 * 15 14 12 35 35 H 1.08004 * 119.67260 * 179.97438 * 20 6 5 36 36 H 1.07996 * 119.58467 * 180.02562 * 21 20 6 37 37 H 1.08005 * 120.15268 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1248 1.1961 0.0000 4 6 3.4654 1.2779 -0.0005 5 6 4.2608 0.0500 -0.0005 6 6 5.6624 0.0742 -0.0005 7 7 6.3467 1.2931 0.0047 8 6 7.5108 1.4093 0.6739 9 8 8.0059 0.4368 1.2032 10 6 8.1975 2.7477 0.7644 11 16 9.7258 2.5785 1.7191 12 6 10.3044 4.2420 1.6681 13 1 9.7341 4.9963 1.1463 14 6 11.4935 4.5828 2.2975 15 7 12.1889 3.6634 2.9330 16 14 12.1073 6.3463 2.2427 17 1 11.5662 7.0951 3.4054 18 1 13.5913 6.3557 2.2951 19 1 11.6522 6.9899 0.9842 20 6 6.3619 -1.1192 0.0000 21 6 5.6899 -2.3338 0.0011 22 6 4.3133 -2.3786 0.0011 23 6 3.5831 -1.1897 -0.0005 24 6 2.1158 -1.1802 -0.0005 25 8 1.4932 -2.2270 -0.0002 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 -0.3633 -0.5138 0.8900 29 1 1.5475 2.1089 -0.0004 30 1 3.9522 2.2421 -0.0009 31 1 5.9838 2.0551 -0.4732 32 1 8.4335 3.1036 -0.2385 33 1 7.5379 3.4619 1.2574 34 1 13.0198 3.9017 3.3732 35 1 7.4419 -1.1059 -0.0004 36 1 6.2535 -3.2550 0.0019 37 1 3.8015 -3.3297 0.0023 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337137674.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:17 Heat of formation + Delta-G solvation = -21.111830 kcal Electronic energy + Delta-G solvation = -22784.251885 eV Core-core repulsion = 19232.077458 eV Total energy + Delta-G solvation = -3552.174427 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.44148 -40.06601 -38.02275 -37.09500 -34.69680 -33.17579 -32.49074 -30.87601 -29.71474 -28.37754 -27.63142 -25.55475 -24.07603 -23.71322 -21.98440 -20.54408 -18.65039 -18.32182 -17.86007 -17.38794 -16.50358 -16.38111 -16.23734 -15.49790 -14.97872 -14.86104 -14.84852 -14.49304 -14.15311 -13.71222 -13.63124 -13.41799 -13.08611 -12.91895 -12.76501 -12.65644 -12.17921 -11.93875 -11.69431 -11.55193 -11.11712 -11.08489 -10.82845 -10.52032 -10.26455 -9.90140 -9.63384 -9.48028 -9.12618 -8.62353 -8.33960 -7.68612 -6.58606 -6.28004 -3.99788 0.58114 0.76288 1.91531 2.37588 2.65384 2.79144 2.94281 3.18428 3.22441 3.26590 3.52308 3.84343 4.13470 4.14739 4.24654 4.63756 4.72041 4.77320 4.83315 4.92917 4.96484 5.07555 5.22380 5.22460 5.36636 5.45012 5.57952 5.61383 5.64011 5.73643 5.99869 6.04503 6.20434 6.24877 6.31839 6.42142 6.84496 6.89747 7.39621 7.53526 7.64854 8.28566 8.31181 9.17480 10.79355 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.026791 B = 0.002599 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.871592 B =10771.295475 C =11640.124361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.527 5.527 3 C 0.103 3.897 4 C -0.193 4.193 5 C -0.026 4.026 6 C 0.152 3.848 7 N -0.675 5.675 8 C 0.532 3.468 9 O -0.495 6.495 10 C -0.154 4.154 11 S -0.056 6.056 12 C -0.537 4.537 13 H 0.074 0.926 14 C 0.074 3.926 15 N -0.867 5.867 16 Si 0.920 3.080 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.272 1.272 20 C -0.088 4.088 21 C -0.113 4.113 22 C -0.071 4.071 23 C -0.138 4.138 24 C 0.548 3.452 25 O -0.529 6.529 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.158 0.842 30 H 0.145 0.855 31 H 0.410 0.590 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.269 0.731 35 H 0.150 0.850 36 H 0.134 0.866 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.767 -4.289 -8.738 23.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.243 5.243 3 C -0.017 4.017 4 C -0.216 4.216 5 C -0.030 4.030 6 C 0.056 3.944 7 N -0.322 5.322 8 C 0.320 3.680 9 O -0.367 6.367 10 C -0.304 4.304 11 S 0.171 5.829 12 C -0.685 4.685 13 H 0.092 0.908 14 C -0.136 4.136 15 N -0.502 5.502 16 Si 0.746 3.254 17 H -0.202 1.202 18 H -0.207 1.207 19 H -0.197 1.197 20 C -0.109 4.109 21 C -0.132 4.132 22 C -0.090 4.090 23 C -0.141 4.141 24 C 0.343 3.657 25 O -0.407 6.407 26 H 0.105 0.895 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.175 0.825 30 H 0.162 0.838 31 H 0.246 0.754 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.079 0.921 35 H 0.168 0.832 36 H 0.152 0.848 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -21.154 -6.521 -7.719 23.444 hybrid contribution -0.334 2.850 -0.783 2.974 sum -21.489 -3.672 -8.503 23.400 Atomic orbital electron populations 1.22025 0.77421 1.03650 1.03961 1.44991 1.08667 1.05909 1.64762 1.21385 0.93687 0.88386 0.98226 1.21319 0.91969 0.97547 1.10806 1.18781 0.91594 0.92701 0.99895 1.17478 0.89218 0.86526 1.01192 1.43547 1.23761 1.11881 1.53018 1.20571 0.79458 0.91318 0.76661 1.90706 1.62880 1.39193 1.43938 1.23541 1.04848 0.95558 1.06458 1.85443 1.16312 1.14441 1.66755 1.22846 1.10733 0.94358 1.40571 0.90818 1.25000 0.95536 0.98563 0.94465 1.70015 1.14816 1.33158 1.32199 0.86152 0.78002 0.82618 0.78640 1.20238 1.20720 1.19665 1.21596 1.02127 0.90536 0.96650 1.21087 0.93655 0.98039 1.00447 1.20983 0.93722 0.97125 0.97207 1.19551 0.91585 0.93773 1.09225 1.18129 0.87898 0.82645 0.77042 1.90857 1.69044 1.30500 1.50341 0.89528 0.90645 0.90623 0.82502 0.83754 0.75404 0.88722 0.88726 0.92095 0.83249 0.84819 0.84674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.43 9.99 59.85 0.60 1.02 16 2 N -0.53 -4.86 3.01 -125.11 -0.38 -5.24 16 3 C 0.10 0.75 10.20 -16.81 -0.17 0.57 16 4 C -0.19 -1.71 9.64 -37.72 -0.36 -2.07 16 5 C -0.03 -0.31 5.90 -104.77 -0.62 -0.93 16 6 C 0.15 2.03 6.32 -83.47 -0.53 1.50 16 7 N -0.68 -8.65 5.04 -9.71 -0.05 -8.70 16 8 C 0.53 9.16 7.69 -10.99 -0.08 9.07 16 9 O -0.50 -10.32 13.29 5.55 0.07 -10.25 16 10 C -0.15 -2.84 6.16 36.00 0.22 -2.62 16 11 S -0.06 -1.45 20.57 -107.50 -2.21 -3.66 16 12 C -0.54 -14.72 9.50 30.94 0.29 -14.42 16 13 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 14 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 15 N -0.87 -25.52 13.22 55.49 0.73 -24.79 16 16 Si 0.92 20.81 29.55 -169.99 -5.02 15.79 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 20 C -0.09 -1.24 8.68 -39.33 -0.34 -1.58 16 21 C -0.11 -1.36 10.00 -39.56 -0.40 -1.76 16 22 C -0.07 -0.87 9.65 -39.29 -0.38 -1.25 16 23 C -0.14 -1.77 5.89 -104.83 -0.62 -2.39 16 24 C 0.55 6.96 7.62 -12.83 -0.10 6.86 16 25 O -0.53 -7.96 16.50 5.11 0.08 -7.87 16 26 H 0.09 0.23 7.65 -51.93 -0.40 -0.17 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.16 0.51 7.75 -52.48 -0.41 0.10 16 30 H 0.14 0.95 7.10 -52.48 -0.37 0.58 16 31 H 0.41 3.77 7.73 -40.82 -0.32 3.46 16 32 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 33 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 34 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.15 2.32 6.19 -52.48 -0.33 2.00 16 36 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 37 H 0.14 1.52 7.79 -52.48 -0.41 1.11 16 LS Contribution 336.19 15.07 5.07 5.07 Total: -1.00 -35.82 336.19 -8.17 -43.99 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -3.88 Total: 1.68 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -2.58 Total: -6.03 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 0.31 Total: -38.72 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: 0.16 Total: -18.12 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: -1.45 SS G_CDS: -2.21 Total: -3.66 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.82 -8.17 -43.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337137674.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.879 kcal (2) G-P(sol) polarization free energy of solvation -35.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds