Wall clock time and date at job start Tue Mar 31 2020 11:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36594 * 118.87884 * 2 1 4 4 C 1.34318 * 122.37198 * 180.02562 * 3 2 1 5 5 C 1.46303 * 119.44073 * 359.97438 * 4 3 2 6 6 C 1.40172 * 121.94475 * 180.02562 * 5 4 3 7 7 N 1.39787 * 120.30226 * 0.24532 * 6 5 4 8 8 C 1.34776 * 119.99587 * 145.04498 * 7 6 5 9 9 O 1.21294 * 120.00264 * 4.48749 * 8 7 6 10 10 C 1.50696 * 119.99988 * 184.48093 * 8 7 6 11 11 S 1.81000 * 109.47337 * 180.02562 * 10 8 7 12 12 C 1.76207 * 100.00201 * 180.02562 * 11 10 8 13 13 H 1.08000 * 119.99595 * 359.97438 * 12 11 10 14 14 C 1.38791 * 120.00006 * 180.02562 * 12 11 10 15 15 N 1.31639 * 120.00150 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00126 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46966 * 89.99890 * 16 14 12 18 18 H 1.48494 * 109.47043 * 209.99952 * 16 14 12 19 19 H 1.48499 * 109.46695 * 330.00123 * 16 14 12 20 20 C 1.38336 * 119.38984 * 179.97438 * 6 5 4 21 21 C 1.38810 * 120.66348 * 359.97438 * 20 6 5 22 22 C 1.37731 * 120.82246 * 0.02562 * 21 20 6 23 23 C 1.39520 * 119.69294 * 0.02562 * 22 21 20 24 24 C 1.34775 * 118.87276 * 180.02562 * 2 1 3 25 25 O 1.21792 * 120.38215 * 359.95780 * 24 2 1 26 26 H 1.09004 * 109.46622 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.46977 * 120.00233 * 1 2 3 28 28 H 1.08994 * 109.47036 * 240.00279 * 1 2 3 29 29 H 1.08003 * 118.81436 * 359.97438 * 3 2 1 30 30 H 1.08005 * 120.28060 * 179.97438 * 4 3 2 31 31 H 0.96994 * 120.00052 * 325.04962 * 7 6 5 32 32 H 1.09000 * 109.47368 * 300.00430 * 10 8 7 33 33 H 1.09002 * 109.47182 * 60.00375 * 10 8 7 34 34 H 0.97004 * 119.99604 * 180.02562 * 15 14 12 35 35 H 1.08004 * 119.67260 * 179.97438 * 20 6 5 36 36 H 1.07996 * 119.58467 * 180.02562 * 21 20 6 37 37 H 1.08005 * 120.15268 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1248 1.1961 0.0000 4 6 3.4654 1.2779 -0.0005 5 6 4.2608 0.0500 -0.0005 6 6 5.6624 0.0742 -0.0005 7 7 6.3467 1.2931 0.0047 8 6 7.5108 1.4093 0.6739 9 8 8.0059 0.4368 1.2032 10 6 8.1975 2.7477 0.7644 11 16 9.7258 2.5785 1.7191 12 6 10.3044 4.2420 1.6681 13 1 9.7341 4.9963 1.1463 14 6 11.4935 4.5828 2.2975 15 7 12.1889 3.6634 2.9330 16 14 12.1073 6.3463 2.2427 17 1 11.5662 7.0951 3.4054 18 1 13.5913 6.3557 2.2951 19 1 11.6522 6.9899 0.9842 20 6 6.3619 -1.1192 0.0000 21 6 5.6899 -2.3338 0.0011 22 6 4.3133 -2.3786 0.0011 23 6 3.5831 -1.1897 -0.0005 24 6 2.1158 -1.1802 -0.0005 25 8 1.4932 -2.2270 -0.0002 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 -0.3633 -0.5138 0.8900 29 1 1.5475 2.1089 -0.0004 30 1 3.9522 2.2421 -0.0009 31 1 5.9838 2.0551 -0.4732 32 1 8.4335 3.1036 -0.2385 33 1 7.5379 3.4619 1.2574 34 1 13.0198 3.9017 3.3732 35 1 7.4419 -1.1059 -0.0004 36 1 6.2535 -3.2550 0.0019 37 1 3.8015 -3.3297 0.0023 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337137674.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:17 Heat of formation + Delta-G solvation = -45.010845 kcal Electronic energy + Delta-G solvation = -22785.288224 eV Core-core repulsion = 19232.077458 eV Total energy + Delta-G solvation = -3553.210766 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.33262 -41.22846 -39.12113 -37.95171 -35.88902 -34.56649 -33.96013 -32.09795 -30.65648 -29.51757 -28.32568 -27.63974 -24.89565 -24.63237 -23.04219 -21.68886 -19.95626 -19.59883 -18.93026 -18.40487 -17.75008 -17.38087 -17.03457 -16.86088 -16.69388 -16.09147 -15.89194 -15.68101 -15.54438 -14.94885 -14.52794 -14.37683 -14.29490 -14.00605 -13.83390 -13.53038 -13.22165 -13.14942 -12.93248 -12.87601 -12.62313 -12.43615 -12.38379 -11.73547 -11.60967 -11.30750 -11.12571 -10.89363 -10.42911 -10.26452 -9.64717 -8.66243 -8.53305 -8.33361 -6.11104 -0.32565 -0.19345 1.04442 1.24229 1.44256 1.45763 1.51252 1.57503 1.67470 1.86862 2.10949 2.28261 2.90578 3.01470 3.27977 3.35285 3.63360 3.78682 3.86072 3.92338 4.10120 4.23662 4.30627 4.33682 4.44510 4.47106 4.52883 4.68068 4.79996 4.81360 4.84232 5.17648 5.23505 5.31507 5.40526 5.44318 5.57027 5.85068 6.09706 6.21561 6.32951 6.77773 7.07011 7.08734 8.75604 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.026791 B = 0.002599 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.871592 B =10771.295475 C =11640.124361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.524 5.524 3 C 0.124 3.876 4 C -0.215 4.215 5 C -0.016 4.016 6 C 0.131 3.869 7 N -0.649 5.649 8 C 0.536 3.464 9 O -0.540 6.540 10 C -0.127 4.127 11 S -0.149 6.149 12 C -0.543 4.543 13 H 0.086 0.914 14 C 0.012 3.988 15 N -0.912 5.912 16 Si 0.998 3.002 17 H -0.269 1.269 18 H -0.281 1.281 19 H -0.256 1.256 20 C -0.104 4.104 21 C -0.119 4.119 22 C -0.072 4.072 23 C -0.162 4.162 24 C 0.538 3.462 25 O -0.564 6.564 26 H 0.131 0.869 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.212 0.788 30 H 0.172 0.828 31 H 0.429 0.571 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.270 0.730 35 H 0.128 0.872 36 H 0.151 0.849 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.441 -1.236 -9.822 26.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.238 5.238 3 C 0.005 3.995 4 C -0.238 4.238 5 C -0.020 4.020 6 C 0.036 3.964 7 N -0.296 5.296 8 C 0.323 3.677 9 O -0.415 6.415 10 C -0.278 4.278 11 S 0.078 5.922 12 C -0.691 4.691 13 H 0.105 0.895 14 C -0.192 4.192 15 N -0.549 5.549 16 Si 0.820 3.180 17 H -0.194 1.194 18 H -0.206 1.206 19 H -0.180 1.180 20 C -0.125 4.125 21 C -0.137 4.137 22 C -0.091 4.091 23 C -0.166 4.166 24 C 0.333 3.667 25 O -0.446 6.446 26 H 0.150 0.850 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.228 0.772 30 H 0.189 0.811 31 H 0.270 0.730 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.079 0.921 35 H 0.146 0.854 36 H 0.169 0.831 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -23.891 -3.430 -8.842 25.704 hybrid contribution 0.275 1.845 -0.507 1.933 sum -23.616 -1.584 -9.348 25.448 Atomic orbital electron populations 1.22318 0.75253 1.06504 1.03557 1.45188 1.10187 1.05562 1.62881 1.22190 0.93688 0.89060 0.94604 1.21642 0.92615 0.97156 1.12384 1.19011 0.91061 0.93934 0.97988 1.17530 0.89922 0.86141 1.02811 1.43101 1.22129 1.12580 1.51822 1.20327 0.80361 0.90206 0.76765 1.90708 1.64363 1.40269 1.46188 1.23348 1.01143 0.96983 1.06335 1.85649 1.21757 1.15534 1.69251 1.23207 1.11043 0.94536 1.40334 0.89544 1.26120 0.95773 1.03436 0.93902 1.70187 1.15404 1.35762 1.33528 0.84963 0.77180 0.76555 0.79351 1.19392 1.20630 1.17992 1.21572 1.01290 0.91903 0.97731 1.21213 0.93788 0.98196 1.00528 1.21136 0.93769 0.97620 0.96620 1.19811 0.92279 0.94334 1.10199 1.18196 0.87818 0.83452 0.77199 1.90830 1.69528 1.31932 1.52313 0.85023 0.90942 0.91273 0.77162 0.81108 0.73050 0.86349 0.86268 0.92073 0.85396 0.83083 0.84175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.55 9.99 127.77 1.28 1.83 16 2 N -0.52 -8.06 3.01 -667.91 -2.01 -10.07 16 3 C 0.12 1.21 10.20 83.06 0.85 2.06 16 4 C -0.22 -3.01 9.64 23.47 0.23 -2.78 16 5 C -0.02 -0.36 5.90 -19.96 -0.12 -0.48 16 6 C 0.13 3.44 6.32 38.37 0.24 3.68 16 7 N -0.65 -15.62 5.04 -303.02 -1.53 -17.15 16 8 C 0.54 18.21 7.69 87.66 0.67 18.88 16 9 O -0.54 -23.28 13.29 -3.07 -0.04 -23.32 16 10 C -0.13 -4.53 6.16 71.23 0.44 -4.09 16 11 S -0.15 -7.87 20.57 -56.49 -1.16 -9.03 16 12 C -0.54 -29.68 9.50 67.95 0.65 -29.03 16 13 H 0.09 4.32 7.80 -2.91 -0.02 4.30 16 14 C 0.01 0.68 5.49 84.85 0.47 1.15 16 15 N -0.91 -54.92 13.22 21.65 0.29 -54.63 16 16 Si 1.00 42.24 29.55 68.60 2.03 44.27 16 17 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 18 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 20 C -0.10 -3.03 8.68 22.43 0.19 -2.83 16 21 C -0.12 -2.96 10.00 22.29 0.22 -2.74 16 22 C -0.07 -1.80 9.65 22.46 0.22 -1.59 16 23 C -0.16 -4.10 5.89 -20.00 -0.12 -4.22 16 24 C 0.54 13.13 7.62 86.46 0.66 13.79 16 25 O -0.56 -17.00 16.50 -4.64 -0.08 -17.07 16 26 H 0.13 -0.06 7.65 -2.38 -0.02 -0.08 16 27 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.21 -0.18 7.75 -2.91 -0.02 -0.20 16 30 H 0.17 1.41 7.10 -2.91 -0.02 1.39 16 31 H 0.43 6.59 7.73 -92.71 -0.72 5.87 16 32 H 0.12 3.68 8.14 -2.40 -0.02 3.66 16 33 H 0.12 3.69 8.14 -2.39 -0.02 3.67 16 34 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 35 H 0.13 4.27 6.19 -2.91 -0.02 4.25 16 36 H 0.15 3.05 8.06 -2.91 -0.02 3.02 16 37 H 0.14 3.27 7.79 -2.91 -0.02 3.25 16 Total: -1.00 -82.87 336.19 3.78 -79.09 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 0.41 Total: 14.30 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: 5.87 Total: -6.38 kcal Atomic # 7 Polarization: -78.60 SS G_CDS: -3.25 Total: -81.85 kcal Atomic # 8 Polarization: -40.28 SS G_CDS: -0.12 Total: -40.40 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Atomic # 16 Polarization: -7.87 SS G_CDS: -1.16 Total: -9.03 kcal Total: -82.87 3.78 -79.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337137674.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.082 kcal (2) G-P(sol) polarization free energy of solvation -82.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds