Wall clock time and date at job start Tue Mar 31 2020 11:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29031 * 124.91582 * 2 1 4 4 C 1.31785 * 117.12186 * 179.97438 * 3 2 1 5 5 C 1.50696 * 122.74510 * 179.97438 * 4 3 2 6 6 O 1.42905 * 109.46688 * 180.02562 * 5 4 3 7 7 C 1.35659 * 116.99888 * 179.97438 * 6 5 4 8 8 C 1.38687 * 120.15462 * 0.02993 * 7 6 5 9 9 C 1.38075 * 120.09012 * 179.97438 * 8 7 6 10 10 C 1.38555 * 120.40106 * 359.97438 * 9 8 7 11 11 C 1.37775 * 120.30920 * 359.73797 * 10 9 8 12 12 C 1.39765 * 119.89784 * 0.51792 * 11 10 9 13 13 C 1.47426 * 120.19589 * 179.76651 * 12 11 10 14 14 O 1.21628 * 120.00364 * 179.71934 * 13 12 11 15 15 N 1.34777 * 119.99972 * 359.72264 * 13 12 11 16 16 C 1.36905 * 119.99858 * 179.97438 * 15 13 12 17 17 H 1.08000 * 120.00535 * 359.72761 * 16 15 13 18 18 C 1.39028 * 120.00072 * 179.97438 * 16 15 13 19 19 N 1.31380 * 119.99486 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00314 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46812 * 90.00264 * 20 18 16 22 22 H 1.48494 * 109.47357 * 210.00340 * 20 18 16 23 23 H 1.48502 * 109.47120 * 330.01059 * 20 18 16 24 24 C 1.33636 * 114.49817 * 0.23554 * 4 3 2 25 25 S 1.70974 * 124.91629 * 179.97438 * 2 1 3 26 26 H 1.09001 * 109.47003 * 90.00005 * 1 2 3 27 27 H 1.08995 * 109.47259 * 210.00229 * 1 2 3 28 28 H 1.09003 * 109.46868 * 330.00353 * 1 2 3 29 29 H 1.08995 * 109.47071 * 60.03352 * 5 4 3 30 30 H 1.08999 * 109.47046 * 300.02431 * 5 4 3 31 31 H 1.08004 * 119.94828 * 359.97438 * 8 7 6 32 32 H 1.07998 * 119.79591 * 179.97438 * 9 8 7 33 33 H 1.08004 * 119.84278 * 179.97438 * 10 9 8 34 34 H 1.07994 * 120.05282 * 180.25920 * 11 10 9 35 35 H 0.96999 * 120.00047 * 359.97438 * 15 13 12 36 36 H 0.97005 * 119.99761 * 179.97438 * 19 18 16 37 37 H 1.08009 * 126.03376 * 179.75875 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8793 0.0005 5 6 4.5307 2.0246 0.0000 6 8 5.8642 1.5108 0.0002 7 6 6.8735 2.4172 -0.0008 8 6 6.5905 3.7749 -0.0012 9 6 7.6188 4.6964 -0.0016 10 6 8.9385 4.2744 -0.0011 11 6 9.2384 2.9297 0.0053 12 6 8.2075 1.9859 0.0004 13 6 8.5211 0.5454 0.0020 14 8 7.6212 -0.2729 0.0028 15 7 9.8049 0.1351 0.0026 16 6 10.0960 -1.2026 0.0046 17 1 9.2970 -1.9292 0.0102 18 6 11.4203 -1.6259 0.0047 19 7 12.3923 -0.7420 0.0034 20 14 11.8175 -3.4511 0.0082 21 1 11.9221 -3.9376 -1.3909 22 1 13.1079 -3.6756 0.7080 23 1 10.7383 -4.1913 0.7102 24 6 3.9354 -0.4006 -0.0040 25 16 2.4856 -1.4020 0.0006 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3633 0.8901 0.5138 29 1 4.3765 2.6349 0.8898 30 1 4.3764 2.6343 -0.8902 31 1 5.5643 4.1118 -0.0012 32 1 7.3930 5.7525 -0.0024 33 1 9.7357 5.0029 -0.0018 34 1 10.2685 2.6053 0.0100 35 1 10.5226 0.7877 0.0016 36 1 13.3163 -1.0372 0.0039 37 1 4.9546 -0.7581 -0.0081 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339926290.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:52 Heat of formation + Delta-G solvation = 0.290577 kcal Electronic energy + Delta-G solvation = -23166.126247 eV Core-core repulsion = 19614.879898 eV Total energy + Delta-G solvation = -3551.246349 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.29824 -39.57696 -37.83142 -36.81548 -33.97102 -32.71064 -31.57369 -30.51320 -29.82234 -28.41635 -27.27764 -25.22130 -23.36870 -22.76485 -21.50394 -19.68769 -19.56437 -18.39404 -17.74735 -17.20057 -16.27684 -15.99561 -15.86807 -14.97465 -14.78209 -14.64946 -14.31820 -14.20350 -13.88538 -13.53470 -13.52017 -13.24342 -12.82384 -12.56952 -12.46438 -12.23344 -12.08914 -11.60457 -11.43304 -11.28818 -11.12448 -10.93539 -10.81333 -10.41822 -10.24038 -9.72002 -9.57288 -9.37155 -8.68703 -8.64911 -8.35531 -8.02134 -7.86364 -6.50645 -3.83439 0.76337 1.35623 1.36997 1.71416 1.76505 2.71410 3.11167 3.16157 3.23414 3.29301 3.71162 4.12226 4.21932 4.51626 4.80187 4.83880 5.03791 5.11902 5.17092 5.21443 5.21826 5.31249 5.35257 5.39846 5.49459 5.59662 5.71247 5.78550 5.88256 6.04411 6.19706 6.26673 6.57431 6.61079 6.78630 7.03404 7.47749 7.64706 7.73085 8.02428 8.57631 9.12468 9.49137 10.05844 10.66907 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.011414 B = 0.003876 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.492736 B = 7222.177662 C = 9654.221986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.035 3.965 3 N -0.467 5.467 4 C 0.048 3.952 5 C 0.135 3.865 6 O -0.270 6.270 7 C 0.169 3.831 8 C -0.221 4.221 9 C -0.080 4.080 10 C -0.162 4.162 11 C -0.066 4.066 12 C -0.128 4.128 13 C 0.475 3.525 14 O -0.580 6.580 15 N -0.550 5.550 16 C -0.291 4.291 17 H 0.106 0.894 18 C 0.021 3.979 19 N -0.894 5.894 20 Si 0.933 3.067 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.268 1.268 24 C -0.205 4.205 25 S 0.115 5.885 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.127 0.873 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.134 0.866 35 H 0.392 0.608 36 H 0.274 0.726 37 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.190 6.923 -0.004 17.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.244 4.244 3 N -0.184 5.184 4 C -0.082 4.082 5 C 0.057 3.943 6 O -0.181 6.181 7 C 0.121 3.879 8 C -0.240 4.240 9 C -0.099 4.099 10 C -0.180 4.180 11 C -0.086 4.086 12 C -0.132 4.132 13 C 0.263 3.737 14 O -0.466 6.466 15 N -0.186 5.186 16 C -0.421 4.421 17 H 0.124 0.876 18 C -0.181 4.181 19 N -0.534 5.534 20 Si 0.759 3.241 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.193 1.193 24 C -0.344 4.344 25 S 0.369 5.631 26 H 0.102 0.898 27 H 0.098 0.902 28 H 0.105 0.895 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.145 0.855 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.152 0.848 35 H 0.227 0.773 36 H 0.084 0.916 37 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -17.015 5.511 0.008 17.885 hybrid contribution 1.388 0.524 -0.020 1.484 sum -15.627 6.035 -0.012 16.752 Atomic orbital electron populations 1.20385 0.85160 1.04020 1.03717 1.26887 1.01550 0.91143 1.04802 1.65801 1.03894 1.32176 1.16495 1.19545 0.89489 0.93828 1.05344 1.20676 0.79532 0.91857 1.02245 1.86312 1.12136 1.32181 1.87456 1.18903 0.87322 0.87518 0.94162 1.21137 1.00196 0.91821 1.10831 1.20902 0.92404 0.98829 0.97770 1.20925 0.96408 0.95596 1.05109 1.21307 0.98720 0.92476 0.96073 1.19836 0.90246 0.95686 1.07467 1.17480 0.83839 0.86592 0.85775 1.90588 1.45679 1.53988 1.56316 1.41868 1.05592 1.08357 1.62759 1.19789 0.92840 0.82943 1.46482 0.87583 1.25338 0.95145 1.00462 0.97170 1.69595 1.00157 1.34416 1.49269 0.85812 0.77954 0.81807 0.78505 1.20268 1.20806 1.19273 1.27258 1.04203 0.95306 1.07600 1.83991 0.98086 1.12695 1.68365 0.89764 0.90168 0.89481 0.90420 0.90426 0.85529 0.86093 0.85904 0.84837 0.77320 0.91600 0.78233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.46 36.01 0.38 -0.18 16 2 C 0.03 0.42 7.39 -13.45 -0.10 0.32 16 3 N -0.47 -6.81 10.53 -8.06 -0.08 -6.89 16 4 C 0.05 0.76 6.74 -84.23 -0.57 0.19 16 5 C 0.14 2.05 5.35 36.00 0.19 2.25 16 6 O -0.27 -5.17 7.14 -40.56 -0.29 -5.46 16 7 C 0.17 3.14 6.70 -38.68 -0.26 2.88 16 8 C -0.22 -3.24 9.03 -39.48 -0.36 -3.60 16 9 C -0.08 -1.06 10.03 -39.52 -0.40 -1.46 16 10 C -0.16 -2.31 10.02 -39.63 -0.40 -2.70 16 11 C -0.07 -1.15 9.54 -39.18 -0.37 -1.53 16 12 C -0.13 -2.64 5.89 -104.85 -0.62 -3.26 16 13 C 0.48 11.93 7.71 -12.52 -0.10 11.84 16 14 O -0.58 -16.02 14.69 -16.63 -0.24 -16.27 16 15 N -0.55 -14.26 5.23 -11.95 -0.06 -14.33 16 16 C -0.29 -8.09 9.68 -14.99 -0.15 -8.24 16 17 H 0.11 3.07 7.15 -52.49 -0.38 2.69 16 18 C 0.02 0.57 5.50 -17.45 -0.10 0.47 16 19 N -0.89 -23.97 13.05 55.50 0.72 -23.25 16 20 Si 0.93 20.78 29.55 -169.99 -5.02 15.76 16 21 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 24 C -0.20 -3.34 10.56 29.12 0.31 -3.04 16 25 S 0.12 1.44 23.18 -107.50 -2.49 -1.05 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 1.05 7.66 -51.93 -0.40 0.65 16 30 H 0.08 1.05 7.66 -51.93 -0.40 0.65 16 31 H 0.13 1.51 6.30 -52.48 -0.33 1.18 16 32 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 34 H 0.13 2.27 6.40 -52.49 -0.34 1.94 16 35 H 0.39 9.63 5.92 -40.82 -0.24 9.39 16 36 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 37 H 0.20 3.80 7.53 -52.48 -0.40 3.41 16 LS Contribution 336.77 15.07 5.08 5.08 Total: -1.00 -32.24 336.77 -8.65 -40.88 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -3.72 Total: 11.58 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -2.53 Total: -6.05 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: 0.58 Total: -44.47 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.53 Total: -21.73 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.49 Total: -1.05 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.24 -8.65 -40.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339926290.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.175 kcal (2) G-P(sol) polarization free energy of solvation -32.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds