Wall clock time and date at job start Tue Mar 31 2020 12:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42909 * 114.00226 * 2 1 4 4 C 1.50692 * 109.47534 * 179.97438 * 3 2 1 5 5 N 1.29374 * 124.70943 * 89.97166 * 4 3 2 6 6 C 1.30949 * 117.46049 * 180.02562 * 5 4 3 7 7 C 1.36708 * 113.93944 * 359.97438 * 6 5 4 8 8 C 1.46621 * 126.17682 * 179.97438 * 7 6 5 9 9 O 1.21699 * 120.00091 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00045 * 180.02562 * 8 7 6 11 11 C 1.38986 * 120.00166 * 184.45926 * 10 8 7 12 12 C 1.38689 * 120.28728 * 325.81121 * 11 10 8 13 13 C 1.38197 * 120.03153 * 179.97438 * 12 11 10 14 14 C 1.38893 * 120.62003 * 0.02562 * 13 12 11 15 15 C 1.36452 * 120.58415 * 0.02842 * 14 13 12 16 16 C 1.40744 * 119.94627 * 359.67691 * 15 14 13 17 17 C 1.41046 * 120.30086 * 180.30472 * 16 15 14 18 18 H 1.07998 * 119.99979 * 148.83570 * 17 16 15 19 19 C 1.39958 * 120.00400 * 328.82711 * 17 16 15 20 20 N 1.30851 * 120.00353 * 167.56220 * 19 17 16 21 21 Si 1.86805 * 119.99741 * 347.56638 * 19 17 16 22 22 H 1.48500 * 109.46982 * 92.50363 * 21 19 17 23 23 H 1.48500 * 109.47115 * 212.50409 * 21 19 17 24 24 H 1.48503 * 109.46971 * 332.50620 * 21 19 17 25 25 S 1.70928 * 124.70806 * 270.24616 * 4 3 2 26 26 H 1.09002 * 109.46845 * 60.00430 * 1 2 3 27 27 H 1.08995 * 109.47262 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47263 * 300.00288 * 1 2 3 29 29 H 1.09000 * 109.46934 * 59.99542 * 3 2 1 30 30 H 1.09000 * 109.46727 * 299.99960 * 3 2 1 31 31 H 1.08004 * 123.03152 * 179.97438 * 6 5 4 32 32 H 0.97004 * 120.00093 * 4.73012 * 10 8 7 33 33 H 1.07997 * 119.98457 * 359.97438 * 12 11 10 34 34 H 1.07992 * 119.69482 * 180.02562 * 13 12 11 35 35 H 1.07994 * 119.70302 * 179.97438 * 14 13 12 36 36 H 1.08000 * 120.02796 * 179.97438 * 15 14 13 37 37 H 0.97000 * 119.99890 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 7 4.2473 1.1277 -1.0626 6 6 5.5421 1.0248 -0.8968 7 6 5.9331 0.9948 0.4129 8 6 7.3107 0.8850 0.9025 9 8 8.2332 0.8099 0.1124 10 7 7.5554 0.8661 2.2277 11 6 8.8651 0.8557 2.6926 12 6 9.8535 0.1891 1.9838 13 6 11.1543 0.1826 2.4506 14 6 11.4865 0.8389 3.6287 15 6 10.5339 1.5016 4.3466 16 6 9.2028 1.5292 3.8903 17 6 8.2134 2.2173 4.6231 18 1 7.3803 2.6737 4.1091 19 6 8.3110 2.3086 6.0163 20 7 7.5431 3.1401 6.6729 21 14 9.5378 1.2436 6.9383 22 1 10.8133 1.9863 7.1021 23 1 8.9894 0.9010 8.2751 24 1 9.7861 -0.0032 6.1707 25 16 4.4817 1.1040 1.4062 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.6886 1.8464 0.8899 30 1 1.6886 1.8464 -0.8900 31 1 6.2385 0.9687 -1.7204 32 1 6.8173 0.8560 2.8571 33 1 9.6066 -0.3250 1.0667 34 1 11.9197 -0.3378 1.8942 35 1 12.5075 0.8239 3.9800 36 1 10.8021 2.0087 5.2617 37 1 7.6111 3.2036 7.6384 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344335496.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:50 Heat of formation + Delta-G solvation = -6.872040 kcal Electronic energy + Delta-G solvation = -23012.040506 eV Core-core repulsion = 19460.483563 eV Total energy + Delta-G solvation = -3551.556943 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.16438 -39.38793 -38.05660 -37.38680 -34.05428 -33.70141 -31.67408 -30.52743 -29.37831 -28.02979 -26.45889 -25.21199 -24.16253 -22.63535 -21.50481 -20.19277 -19.46613 -18.45857 -17.53139 -17.18629 -16.90029 -16.36385 -15.86264 -15.67712 -15.24133 -14.92055 -14.64607 -14.13272 -14.02989 -13.87327 -13.40880 -13.13057 -12.93845 -12.67379 -12.49795 -12.16676 -11.79918 -11.71586 -11.57804 -11.09055 -11.02668 -10.74843 -10.18676 -10.04544 -9.94170 -9.84225 -9.54207 -9.50318 -9.45792 -9.05664 -9.02091 -7.71516 -7.22254 -7.04009 -4.60936 0.13072 1.09626 1.54287 2.26013 2.53481 2.62204 3.04290 3.13348 3.24738 3.39326 3.46051 3.68153 3.89246 4.10828 4.43643 4.61000 4.92771 4.99511 5.04287 5.06834 5.13055 5.27371 5.32693 5.33789 6.01638 6.02829 6.07966 6.28193 6.54730 6.64468 6.66358 6.87656 7.09424 7.25330 7.40365 7.52037 7.59070 7.73985 7.92126 8.09905 8.17988 8.46060 8.62014 8.71486 9.97303 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.016081 B = 0.003693 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.810172 B = 7580.532158 C = 8967.963920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.139 3.861 4 C 0.031 3.969 5 N -0.459 5.459 6 C 0.107 3.893 7 C -0.273 4.273 8 C 0.579 3.421 9 O -0.523 6.523 10 N -0.627 5.627 11 C 0.022 3.978 12 C -0.072 4.072 13 C -0.226 4.226 14 C -0.085 4.085 15 C -0.222 4.222 16 C 0.086 3.914 17 C -0.452 4.452 18 H 0.090 0.910 19 C 0.085 3.915 20 N -0.808 5.808 21 Si 0.913 3.087 22 H -0.270 1.270 23 H -0.292 1.292 24 H -0.242 1.242 25 S 0.212 5.788 26 H 0.045 0.955 27 H 0.090 0.910 28 H 0.046 0.954 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.191 0.809 32 H 0.404 0.596 33 H 0.118 0.882 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.715 -3.537 -6.698 13.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.060 3.940 4 C -0.243 4.243 5 N -0.175 5.175 6 C -0.051 4.051 7 C -0.398 4.398 8 C 0.364 3.636 9 O -0.402 6.402 10 N -0.269 5.269 11 C -0.072 4.072 12 C -0.092 4.092 13 C -0.246 4.246 14 C -0.104 4.104 15 C -0.242 4.242 16 C 0.081 3.919 17 C -0.481 4.481 18 H 0.108 0.892 19 C -0.134 4.134 20 N -0.432 5.432 21 Si 0.740 3.260 22 H -0.196 1.196 23 H -0.220 1.220 24 H -0.165 1.165 25 S 0.469 5.531 26 H 0.064 0.936 27 H 0.109 0.891 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.208 0.792 32 H 0.240 0.760 33 H 0.135 0.865 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.122 0.878 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.683 -3.557 -6.425 13.800 hybrid contribution 0.523 0.007 0.141 0.542 sum -11.160 -3.550 -6.284 13.291 Atomic orbital electron populations 1.22807 0.79986 1.03323 1.00367 1.87970 1.20313 1.26288 1.95535 1.20811 0.84455 0.86085 1.02693 1.26842 1.00539 1.04864 0.92047 1.66076 1.05041 1.15085 1.31291 1.22413 0.90355 0.96973 0.95363 1.26323 0.98413 1.17119 0.97948 1.16711 0.85637 0.78279 0.82961 1.90792 1.43524 1.50438 1.55398 1.42723 1.08433 1.70146 1.05569 1.17561 0.82875 1.06111 1.00626 1.20818 0.92600 0.97161 0.98615 1.20346 0.95762 1.09029 0.99471 1.20409 0.97614 0.97230 0.95118 1.20628 0.93059 1.08021 1.02483 1.17547 0.92554 0.89901 0.91863 1.19287 1.08393 1.28825 0.91581 0.89178 1.26135 0.95317 0.93794 0.98155 1.69651 1.34636 1.28595 1.10365 0.86301 0.79576 0.82551 0.77554 1.19606 1.21988 1.16516 1.84113 0.96273 1.62729 1.10024 0.93623 0.89129 0.93578 0.90559 0.89865 0.79232 0.76004 0.86461 0.88343 0.88630 0.87783 0.90308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.38 -4.12 10.69 -35.23 -0.38 -4.49 16 3 C 0.14 1.36 6.51 36.00 0.23 1.60 16 4 C 0.03 0.40 7.00 -13.32 -0.09 0.31 16 5 N -0.46 -6.70 10.50 -11.27 -0.12 -6.82 16 6 C 0.11 1.62 11.16 -18.48 -0.21 1.41 16 7 C -0.27 -4.43 6.52 -36.75 -0.24 -4.66 16 8 C 0.58 11.30 7.63 -12.88 -0.10 11.20 16 9 O -0.52 -11.41 14.25 5.19 0.07 -11.33 16 10 N -0.63 -12.83 4.92 -10.68 -0.05 -12.88 16 11 C 0.02 0.51 6.34 -83.21 -0.53 -0.02 16 12 C -0.07 -1.62 8.69 -39.43 -0.34 -1.96 16 13 C -0.23 -4.82 10.04 -39.35 -0.39 -5.22 16 14 C -0.09 -1.83 9.97 -39.98 -0.40 -2.23 16 15 C -0.22 -5.22 6.95 -39.28 -0.27 -5.50 16 16 C 0.09 2.10 5.15 -106.64 -0.55 1.55 16 17 C -0.45 -11.42 8.85 -37.87 -0.34 -11.76 16 18 H 0.09 2.35 7.71 -52.49 -0.40 1.95 16 19 C 0.09 2.10 5.47 -17.33 -0.09 2.01 16 20 N -0.81 -20.33 13.93 55.55 0.77 -19.55 16 21 Si 0.91 19.88 24.40 -169.99 -4.15 15.73 16 22 H -0.27 -5.75 6.66 56.52 0.38 -5.37 16 23 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.24 -5.40 6.68 56.52 0.38 -5.02 16 25 S 0.21 2.85 22.31 -107.50 -2.40 0.45 16 26 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.19 2.60 8.06 -52.48 -0.42 2.18 16 32 H 0.40 7.65 7.25 -40.82 -0.30 7.36 16 33 H 0.12 2.59 6.15 -52.49 -0.32 2.27 16 34 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 36 H 0.10 2.41 4.41 -52.49 -0.23 2.18 16 37 H 0.29 6.56 8.30 -40.82 -0.34 6.23 16 LS Contribution 331.43 15.07 4.99 4.99 Total: -1.00 -29.64 331.43 -7.28 -36.92 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -3.82 Total: 8.92 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -2.21 Total: -11.94 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: 0.60 Total: -39.25 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.30 Total: -15.82 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -4.15 Total: 15.73 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -2.40 Total: 0.45 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.64 -7.28 -36.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344335496.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.049 kcal (2) G-P(sol) polarization free energy of solvation -29.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds