Wall clock time and date at job start Tue Mar 31 2020 12:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42909 * 114.00226 * 2 1 4 4 C 1.50692 * 109.47534 * 179.97438 * 3 2 1 5 5 N 1.29374 * 124.70943 * 89.97166 * 4 3 2 6 6 C 1.30949 * 117.46049 * 180.02562 * 5 4 3 7 7 C 1.36708 * 113.93944 * 359.97438 * 6 5 4 8 8 C 1.46621 * 126.17682 * 179.97438 * 7 6 5 9 9 O 1.21699 * 120.00091 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00045 * 180.02562 * 8 7 6 11 11 C 1.38986 * 120.00166 * 184.45926 * 10 8 7 12 12 C 1.38689 * 120.28728 * 325.81121 * 11 10 8 13 13 C 1.38197 * 120.03153 * 179.97438 * 12 11 10 14 14 C 1.38893 * 120.62003 * 0.02562 * 13 12 11 15 15 C 1.36452 * 120.58415 * 0.02842 * 14 13 12 16 16 C 1.40744 * 119.94627 * 359.67691 * 15 14 13 17 17 C 1.41046 * 120.30086 * 180.30472 * 16 15 14 18 18 H 1.07998 * 119.99979 * 148.83570 * 17 16 15 19 19 C 1.39958 * 120.00400 * 328.82711 * 17 16 15 20 20 N 1.30851 * 120.00353 * 167.56220 * 19 17 16 21 21 Si 1.86805 * 119.99741 * 347.56638 * 19 17 16 22 22 H 1.48500 * 109.46982 * 92.50363 * 21 19 17 23 23 H 1.48500 * 109.47115 * 212.50409 * 21 19 17 24 24 H 1.48503 * 109.46971 * 332.50620 * 21 19 17 25 25 S 1.70928 * 124.70806 * 270.24616 * 4 3 2 26 26 H 1.09002 * 109.46845 * 60.00430 * 1 2 3 27 27 H 1.08995 * 109.47262 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47263 * 300.00288 * 1 2 3 29 29 H 1.09000 * 109.46934 * 59.99542 * 3 2 1 30 30 H 1.09000 * 109.46727 * 299.99960 * 3 2 1 31 31 H 1.08004 * 123.03152 * 179.97438 * 6 5 4 32 32 H 0.97004 * 120.00093 * 4.73012 * 10 8 7 33 33 H 1.07997 * 119.98457 * 359.97438 * 12 11 10 34 34 H 1.07992 * 119.69482 * 180.02562 * 13 12 11 35 35 H 1.07994 * 119.70302 * 179.97438 * 14 13 12 36 36 H 1.08000 * 120.02796 * 179.97438 * 15 14 13 37 37 H 0.97000 * 119.99890 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 7 4.2473 1.1277 -1.0626 6 6 5.5421 1.0248 -0.8968 7 6 5.9331 0.9948 0.4129 8 6 7.3107 0.8850 0.9025 9 8 8.2332 0.8099 0.1124 10 7 7.5554 0.8661 2.2277 11 6 8.8651 0.8557 2.6926 12 6 9.8535 0.1891 1.9838 13 6 11.1543 0.1826 2.4506 14 6 11.4865 0.8389 3.6287 15 6 10.5339 1.5016 4.3466 16 6 9.2028 1.5292 3.8903 17 6 8.2134 2.2173 4.6231 18 1 7.3803 2.6737 4.1091 19 6 8.3110 2.3086 6.0163 20 7 7.5431 3.1401 6.6729 21 14 9.5378 1.2436 6.9383 22 1 10.8133 1.9863 7.1021 23 1 8.9894 0.9010 8.2751 24 1 9.7861 -0.0032 6.1707 25 16 4.4817 1.1040 1.4062 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.6886 1.8464 0.8899 30 1 1.6886 1.8464 -0.8900 31 1 6.2385 0.9687 -1.7204 32 1 6.8173 0.8560 2.8571 33 1 9.6066 -0.3250 1.0667 34 1 11.9197 -0.3378 1.8942 35 1 12.5075 0.8239 3.9800 36 1 10.8021 2.0087 5.2617 37 1 7.6111 3.2036 7.6384 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344335496.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:49 Heat of formation + Delta-G solvation = -26.695675 kcal Electronic energy + Delta-G solvation = -23012.900124 eV Core-core repulsion = 19460.483563 eV Total energy + Delta-G solvation = -3552.416560 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.58752 -40.71734 -39.18354 -38.70543 -35.70935 -35.52720 -32.78381 -32.33695 -30.79108 -29.27080 -27.23943 -26.89845 -25.25612 -24.13554 -23.14198 -21.83369 -20.79333 -19.68448 -19.33382 -18.70275 -17.75683 -17.62629 -17.17622 -16.68348 -16.52095 -16.37928 -15.89133 -15.77189 -15.47395 -15.19682 -14.98985 -14.75719 -14.26939 -13.93904 -13.73727 -13.46934 -13.28550 -12.89275 -12.77041 -12.68165 -12.47126 -12.38602 -11.83227 -11.64804 -11.28536 -11.21662 -10.98293 -10.76415 -10.73856 -10.68864 -10.16868 -9.52054 -8.96027 -8.87688 -6.49871 -1.04032 -0.02934 0.40634 0.64339 0.80908 1.24403 1.29940 1.42778 1.51581 1.97987 2.12087 2.14379 2.60326 2.62063 3.23796 3.45885 3.66685 3.77036 4.05375 4.22428 4.27694 4.33132 4.41816 4.53916 4.60071 4.63807 4.78326 4.89037 4.90072 4.90917 5.14715 5.30588 5.54588 5.65986 5.85544 5.97122 6.03452 6.09712 6.33227 6.36738 6.45382 6.71753 6.77462 7.06627 8.18077 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.016081 B = 0.003693 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.810172 B = 7580.532158 C = 8967.963920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.135 3.865 4 C 0.047 3.953 5 N -0.477 5.477 6 C 0.121 3.879 7 C -0.310 4.310 8 C 0.583 3.417 9 O -0.551 6.551 10 N -0.632 5.632 11 C 0.016 3.984 12 C -0.088 4.088 13 C -0.215 4.215 14 C -0.088 4.088 15 C -0.235 4.235 16 C 0.064 3.936 17 C -0.474 4.474 18 H 0.066 0.934 19 C 0.054 3.946 20 N -0.843 5.843 21 Si 0.961 3.039 22 H -0.260 1.260 23 H -0.281 1.281 24 H -0.251 1.251 25 S 0.236 5.764 26 H 0.058 0.942 27 H 0.098 0.902 28 H 0.061 0.939 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.198 0.802 32 H 0.408 0.592 33 H 0.119 0.881 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.106 0.894 37 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.995 -4.245 -6.977 14.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C 0.055 3.945 4 C -0.227 4.227 5 N -0.192 5.192 6 C -0.038 4.038 7 C -0.435 4.435 8 C 0.371 3.629 9 O -0.432 6.432 10 N -0.274 5.274 11 C -0.078 4.078 12 C -0.108 4.108 13 C -0.235 4.235 14 C -0.107 4.107 15 C -0.255 4.255 16 C 0.060 3.940 17 C -0.504 4.504 18 H 0.084 0.916 19 C -0.161 4.161 20 N -0.469 5.469 21 Si 0.785 3.215 22 H -0.186 1.186 23 H -0.208 1.208 24 H -0.175 1.175 25 S 0.494 5.506 26 H 0.077 0.923 27 H 0.116 0.884 28 H 0.080 0.920 29 H 0.121 0.879 30 H 0.118 0.882 31 H 0.215 0.785 32 H 0.245 0.755 33 H 0.136 0.864 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.124 0.876 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.990 -4.260 -6.694 14.377 hybrid contribution 0.504 0.182 0.045 0.538 sum -11.486 -4.078 -6.649 13.884 Atomic orbital electron populations 1.23032 0.77865 1.04367 1.01772 1.87918 1.22612 1.26619 1.95839 1.21077 0.82098 0.86423 1.04860 1.27584 1.02120 1.01654 0.91367 1.66193 1.04712 1.16506 1.31823 1.22614 0.90906 0.95112 0.95182 1.25960 0.97813 1.20658 0.99029 1.17028 0.86794 0.76903 0.82209 1.90750 1.44969 1.51658 1.55821 1.42749 1.07819 1.70596 1.06199 1.17816 0.84180 1.05537 1.00315 1.21019 0.93316 0.97606 0.98846 1.20784 0.95864 1.07648 0.99180 1.20779 0.98952 0.96219 0.94722 1.20819 0.93079 1.08566 1.03012 1.17722 0.93089 0.90521 0.92644 1.19219 1.08541 1.30398 0.92229 0.91612 1.26693 0.96582 0.94463 0.98398 1.69671 1.36182 1.29969 1.11061 0.85566 0.78327 0.80766 0.76793 1.18562 1.20796 1.17479 1.84036 0.94792 1.62188 1.09615 0.92323 0.88375 0.92043 0.87879 0.88187 0.78497 0.75528 0.86365 0.85201 0.85055 0.87643 0.89521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.41 -7.95 10.69 -148.98 -1.59 -9.54 16 3 C 0.13 2.30 6.51 71.23 0.46 2.77 16 4 C 0.05 1.14 7.00 88.47 0.62 1.76 16 5 N -0.48 -13.35 10.50 -189.56 -1.99 -15.34 16 6 C 0.12 3.62 11.16 84.47 0.94 4.56 16 7 C -0.31 -10.11 6.52 24.10 0.16 -9.96 16 8 C 0.58 23.26 7.63 86.43 0.66 23.91 16 9 O -0.55 -24.46 14.25 -4.35 -0.06 -24.53 16 10 N -0.63 -26.56 4.92 -305.91 -1.50 -28.07 16 11 C 0.02 0.74 6.34 38.92 0.25 0.99 16 12 C -0.09 -3.90 8.69 22.37 0.19 -3.70 16 13 C -0.22 -8.68 10.04 22.42 0.22 -8.45 16 14 C -0.09 -3.58 9.97 22.01 0.22 -3.36 16 15 C -0.24 -10.83 6.95 22.47 0.16 -10.67 16 16 C 0.06 3.18 5.15 -21.17 -0.11 3.08 16 17 C -0.47 -24.72 8.85 23.38 0.21 -24.51 16 18 H 0.07 3.62 7.71 -2.91 -0.02 3.60 16 19 C 0.05 2.72 5.47 85.26 0.47 3.18 16 20 N -0.84 -43.20 13.93 21.83 0.30 -42.90 16 21 Si 0.96 40.58 24.40 68.60 1.67 42.25 16 22 H -0.26 -10.47 6.66 99.48 0.66 -9.81 16 23 H -0.28 -11.21 7.11 99.48 0.71 -10.51 16 24 H -0.25 -10.87 6.68 99.48 0.67 -10.21 16 25 S 0.24 6.22 22.31 -56.49 -1.26 4.96 16 26 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.20 5.39 8.06 -2.91 -0.02 5.36 16 32 H 0.41 16.09 7.25 -92.71 -0.67 15.42 16 33 H 0.12 5.20 6.15 -2.91 -0.02 5.18 16 34 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 35 H 0.13 4.34 8.06 -2.91 -0.02 4.32 16 36 H 0.11 4.76 4.41 -2.91 -0.01 4.75 16 37 H 0.29 13.63 8.30 -92.71 -0.77 12.86 16 Total: -1.00 -64.01 331.43 1.64 -62.38 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: 0.37 Total: 29.68 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: 5.70 Total: -18.89 kcal Atomic # 7 Polarization: -83.12 SS G_CDS: -3.19 Total: -86.31 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -1.65 Total: -34.07 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 1.67 Total: 42.25 kcal Atomic # 16 Polarization: 6.22 SS G_CDS: -1.26 Total: 4.96 kcal Total: -64.01 1.64 -62.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344335496.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.679 kcal (2) G-P(sol) polarization free energy of solvation -64.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds