Wall clock time and date at job start Tue Mar 31 2020 12:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00208 * 2 1 4 4 C 1.50701 * 109.46940 * 180.02562 * 3 2 1 5 5 N 1.30947 * 123.03424 * 269.99715 * 4 3 2 6 6 C 1.29370 * 117.46401 * 179.97438 * 5 4 3 7 7 S 1.70925 * 110.58517 * 359.76716 * 6 5 4 8 8 C 1.36713 * 123.03100 * 90.00133 * 4 3 2 9 9 C 1.46620 * 126.17553 * 359.96314 * 8 4 3 10 10 O 1.21702 * 120.00292 * 0.02562 * 9 8 4 11 11 N 1.34782 * 119.99833 * 179.97438 * 9 8 4 12 12 C 1.38982 * 119.99656 * 184.72644 * 11 9 8 13 13 C 1.38691 * 120.29024 * 325.77386 * 12 11 9 14 14 C 1.38198 * 120.03129 * 180.27887 * 13 12 11 15 15 C 1.38882 * 120.62125 * 359.49104 * 14 13 12 16 16 C 1.36457 * 120.58614 * 0.51415 * 15 14 13 17 17 C 1.40740 * 119.94476 * 359.74820 * 16 15 14 18 18 C 1.41048 * 120.30465 * 180.02562 * 17 16 15 19 19 H 1.08008 * 119.99957 * 148.69209 * 18 17 16 20 20 C 1.39951 * 119.99976 * 328.69546 * 18 17 16 21 21 N 1.30858 * 119.99973 * 167.68296 * 20 18 17 22 22 Si 1.86799 * 120.00342 * 347.68936 * 20 18 17 23 23 H 1.48502 * 109.47315 * 92.55136 * 22 20 18 24 24 H 1.48496 * 109.47368 * 212.55659 * 22 20 18 25 25 H 1.48503 * 109.46902 * 332.55690 * 22 20 18 26 26 H 1.08994 * 109.47310 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46742 * 299.99856 * 1 2 3 28 28 H 1.09005 * 109.46829 * 59.99909 * 1 2 3 29 29 H 1.08998 * 109.46961 * 59.99936 * 3 2 1 30 30 H 1.08994 * 109.46948 * 299.99883 * 3 2 1 31 31 H 1.07995 * 124.70908 * 179.97438 * 6 5 4 32 32 H 0.96999 * 120.00096 * 4.72195 * 11 9 8 33 33 H 1.08003 * 119.98660 * 0.02562 * 13 12 11 34 34 H 1.08000 * 119.68823 * 179.72417 * 14 13 12 35 35 H 1.07999 * 119.70734 * 180.25901 * 15 14 13 36 36 H 1.08001 * 120.03000 * 179.76652 * 16 15 14 37 37 H 0.97000 * 119.99851 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 7 4.2246 1.1298 1.0969 6 6 5.5081 1.0275 0.9707 7 16 5.9483 0.9857 -0.6803 8 6 4.2550 1.1277 -1.1471 9 6 3.7355 1.1684 -2.5176 10 8 2.5378 1.2631 -2.7119 11 7 4.5845 1.1018 -3.5623 12 6 4.1029 1.2390 -4.8588 13 6 2.8470 0.7550 -5.1934 14 6 2.3758 0.8891 -6.4856 15 6 3.1448 1.5160 -7.4575 16 6 4.3840 2.0014 -7.1562 17 6 4.8900 1.8731 -5.8491 18 6 6.1696 2.3726 -5.5291 19 1 6.3718 2.7425 -4.5347 20 6 7.1773 2.3891 -6.5002 21 7 8.2787 3.0634 -6.2888 22 14 6.9501 1.4487 -8.0981 23 1 6.3657 2.3496 -9.1239 24 1 8.2665 0.9493 -8.5701 25 1 6.0373 0.2997 -7.8708 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6886 1.8463 0.8900 30 1 1.6887 1.8463 -0.8900 31 1 6.2045 0.9726 1.7943 32 1 5.5315 0.9583 -3.4093 33 1 2.2386 0.2694 -4.4448 34 1 1.3988 0.5062 -6.7412 35 1 2.7603 1.6165 -8.4617 36 1 4.9758 2.4840 -7.9199 37 1 8.9770 3.0750 -6.9620 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344339830.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:37 Heat of formation + Delta-G solvation = -4.221967 kcal Electronic energy + Delta-G solvation = -23757.609651 eV Core-core repulsion = 20206.167623 eV Total energy + Delta-G solvation = -3551.442027 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.36281 -39.31356 -37.48504 -37.35460 -34.05884 -33.70007 -31.38706 -30.52594 -29.24953 -27.67335 -26.15233 -25.11893 -24.54082 -22.67649 -21.46150 -20.15118 -19.26843 -18.46586 -17.51939 -17.13279 -16.46416 -16.22808 -15.65065 -15.36542 -15.12385 -14.85313 -14.73789 -14.10415 -14.03456 -13.76687 -13.41657 -13.08670 -12.92074 -12.50790 -12.27475 -12.16147 -11.71291 -11.51420 -11.26956 -11.08634 -11.00637 -10.74090 -10.05492 -9.97002 -9.85028 -9.67670 -9.54266 -9.50179 -9.33126 -9.01564 -8.98320 -7.71256 -7.21410 -7.03855 -4.60798 0.19628 1.15737 1.54256 2.27139 2.50087 2.61738 3.04227 3.13107 3.24747 3.43095 3.62055 3.88568 3.89531 4.33423 4.43912 4.90621 4.97317 5.18556 5.30112 5.31846 5.43690 5.53541 5.67940 5.70597 5.99720 6.01592 6.09115 6.28433 6.55769 6.64861 6.88130 7.09752 7.17382 7.25766 7.40669 7.53187 7.59675 7.74166 7.92325 8.10735 8.18155 8.46538 8.62322 8.72237 9.97464 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.015380 B = 0.004558 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.125893 B = 6140.939832 C = 7745.626874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.380 6.380 3 C 0.132 3.868 4 C 0.128 3.872 5 N -0.463 5.463 6 C 0.018 3.982 7 S 0.189 5.811 8 C -0.258 4.258 9 C 0.579 3.421 10 O -0.516 6.516 11 N -0.627 5.627 12 C 0.023 3.977 13 C -0.072 4.072 14 C -0.226 4.226 15 C -0.085 4.085 16 C -0.222 4.222 17 C 0.086 3.914 18 C -0.452 4.452 19 H 0.090 0.910 20 C 0.085 3.915 21 N -0.809 5.809 22 Si 0.913 3.087 23 H -0.270 1.270 24 H -0.292 1.292 25 H -0.242 1.242 26 H 0.084 0.916 27 H 0.038 0.962 28 H 0.047 0.953 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.206 0.794 32 H 0.404 0.596 33 H 0.118 0.882 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.021 -4.076 10.024 11.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.299 6.299 3 C 0.053 3.947 4 C -0.011 4.011 5 N -0.177 5.177 6 C -0.277 4.277 7 S 0.445 5.555 8 C -0.383 4.383 9 C 0.365 3.635 10 O -0.395 6.395 11 N -0.268 5.268 12 C -0.071 4.071 13 C -0.092 4.092 14 C -0.246 4.246 15 C -0.104 4.104 16 C -0.242 4.242 17 C 0.081 3.919 18 C -0.481 4.481 19 H 0.108 0.892 20 C -0.134 4.134 21 N -0.433 5.433 22 Si 0.740 3.260 23 H -0.196 1.196 24 H -0.220 1.220 25 H -0.165 1.165 26 H 0.102 0.898 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.112 0.888 31 H 0.222 0.778 32 H 0.240 0.760 33 H 0.136 0.864 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.122 0.878 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.637 -4.128 9.932 11.354 hybrid contribution -0.291 0.070 -0.503 0.585 sum -3.929 -4.058 9.429 10.992 Atomic orbital electron populations 1.22705 0.80677 1.02605 1.00081 1.87882 1.19807 1.26668 1.95502 1.20984 0.85169 0.86029 1.02506 1.20438 0.96958 0.98618 0.85083 1.65949 1.04990 1.15488 1.31256 1.28615 0.95170 1.03196 1.00762 1.84222 1.05304 1.63347 1.02643 1.26042 0.96567 1.16288 0.99418 1.16660 0.86445 0.78251 0.82167 1.90736 1.14356 1.50183 1.84242 1.42715 1.10859 1.68692 1.04582 1.17559 0.97605 1.07998 0.83910 1.20824 0.94667 0.97809 0.95867 1.20338 1.00499 1.10183 0.93570 1.20403 0.94637 0.97789 0.97570 1.20620 0.97158 1.09343 0.97065 1.17545 0.93698 0.89681 0.90961 1.19287 0.93546 1.35235 1.00008 0.89184 1.26133 0.94369 0.93115 0.99790 1.69654 1.06509 1.31219 1.35893 0.86299 0.77235 0.81877 0.80562 1.19619 1.22000 1.16527 0.89752 0.94325 0.93478 0.92056 0.88771 0.77792 0.76002 0.86384 0.88406 0.88683 0.87819 0.90314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 11.01 101.05 1.11 1.53 16 2 O -0.38 -6.04 10.69 -35.23 -0.38 -6.42 16 3 C 0.13 2.02 5.77 36.01 0.21 2.23 16 4 C 0.13 2.06 6.46 -83.52 -0.54 1.52 16 5 N -0.46 -6.73 10.49 -11.31 -0.12 -6.85 16 6 C 0.02 0.20 12.21 51.73 0.63 0.83 16 7 S 0.19 2.39 22.36 -107.50 -2.40 -0.01 16 8 C -0.26 -4.28 6.51 -36.75 -0.24 -4.52 16 9 C 0.58 11.32 7.62 -12.88 -0.10 11.22 16 10 O -0.52 -10.99 11.69 5.19 0.06 -10.93 16 11 N -0.63 -12.76 4.93 -10.67 -0.05 -12.81 16 12 C 0.02 0.53 6.34 -83.21 -0.53 0.00 16 13 C -0.07 -1.59 8.69 -39.43 -0.34 -1.94 16 14 C -0.23 -4.77 10.04 -39.36 -0.39 -5.17 16 15 C -0.09 -1.82 9.97 -39.99 -0.40 -2.22 16 16 C -0.22 -5.19 6.94 -39.28 -0.27 -5.46 16 17 C 0.09 2.08 5.14 -106.64 -0.55 1.53 16 18 C -0.45 -11.36 8.85 -37.88 -0.34 -11.70 16 19 H 0.09 2.34 7.70 -52.48 -0.40 1.93 16 20 C 0.08 2.09 5.47 -17.32 -0.09 2.00 16 21 N -0.81 -20.31 13.93 55.55 0.77 -19.53 16 22 Si 0.91 19.84 24.40 -169.99 -4.15 15.69 16 23 H -0.27 -5.74 6.67 56.52 0.38 -5.36 16 24 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.24 -5.40 6.68 56.52 0.38 -5.02 16 26 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 1.55 6.05 -51.93 -0.31 1.23 16 31 H 0.21 1.41 8.06 -52.49 -0.42 0.99 16 32 H 0.40 7.63 7.23 -40.82 -0.30 7.33 16 33 H 0.12 2.60 6.15 -52.48 -0.32 2.27 16 34 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 36 H 0.10 2.39 4.42 -52.49 -0.23 2.16 16 37 H 0.29 6.56 8.30 -40.82 -0.34 6.22 16 LS Contribution 326.55 15.07 4.92 4.92 Total: -1.00 -29.54 326.55 -6.90 -36.44 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -3.71 Total: 9.63 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -1.84 Total: -10.13 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.60 Total: -39.19 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.32 Total: -17.34 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.15 Total: 15.69 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -2.40 Total: -0.01 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.54 -6.90 -36.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344339830.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.217 kcal (2) G-P(sol) polarization free energy of solvation -29.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds