Wall clock time and date at job start Tue Mar 31 2020 12:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00208 * 2 1 4 4 C 1.50701 * 109.46940 * 180.02562 * 3 2 1 5 5 N 1.30947 * 123.03424 * 269.99715 * 4 3 2 6 6 C 1.29370 * 117.46401 * 179.97438 * 5 4 3 7 7 S 1.70925 * 110.58517 * 359.76716 * 6 5 4 8 8 C 1.36713 * 123.03100 * 90.00133 * 4 3 2 9 9 C 1.46620 * 126.17553 * 359.96314 * 8 4 3 10 10 O 1.21702 * 120.00292 * 0.02562 * 9 8 4 11 11 N 1.34782 * 119.99833 * 179.97438 * 9 8 4 12 12 C 1.38982 * 119.99656 * 184.72644 * 11 9 8 13 13 C 1.38691 * 120.29024 * 325.77386 * 12 11 9 14 14 C 1.38198 * 120.03129 * 180.27887 * 13 12 11 15 15 C 1.38882 * 120.62125 * 359.49104 * 14 13 12 16 16 C 1.36457 * 120.58614 * 0.51415 * 15 14 13 17 17 C 1.40740 * 119.94476 * 359.74820 * 16 15 14 18 18 C 1.41048 * 120.30465 * 180.02562 * 17 16 15 19 19 H 1.08008 * 119.99957 * 148.69209 * 18 17 16 20 20 C 1.39951 * 119.99976 * 328.69546 * 18 17 16 21 21 N 1.30858 * 119.99973 * 167.68296 * 20 18 17 22 22 Si 1.86799 * 120.00342 * 347.68936 * 20 18 17 23 23 H 1.48502 * 109.47315 * 92.55136 * 22 20 18 24 24 H 1.48496 * 109.47368 * 212.55659 * 22 20 18 25 25 H 1.48503 * 109.46902 * 332.55690 * 22 20 18 26 26 H 1.08994 * 109.47310 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46742 * 299.99856 * 1 2 3 28 28 H 1.09005 * 109.46829 * 59.99909 * 1 2 3 29 29 H 1.08998 * 109.46961 * 59.99936 * 3 2 1 30 30 H 1.08994 * 109.46948 * 299.99883 * 3 2 1 31 31 H 1.07995 * 124.70908 * 179.97438 * 6 5 4 32 32 H 0.96999 * 120.00096 * 4.72195 * 11 9 8 33 33 H 1.08003 * 119.98660 * 0.02562 * 13 12 11 34 34 H 1.08000 * 119.68823 * 179.72417 * 14 13 12 35 35 H 1.07999 * 119.70734 * 180.25901 * 15 14 13 36 36 H 1.08001 * 120.03000 * 179.76652 * 16 15 14 37 37 H 0.97000 * 119.99851 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 7 4.2246 1.1298 1.0969 6 6 5.5081 1.0275 0.9707 7 16 5.9483 0.9857 -0.6803 8 6 4.2550 1.1277 -1.1471 9 6 3.7355 1.1684 -2.5176 10 8 2.5378 1.2631 -2.7119 11 7 4.5845 1.1018 -3.5623 12 6 4.1029 1.2390 -4.8588 13 6 2.8470 0.7550 -5.1934 14 6 2.3758 0.8891 -6.4856 15 6 3.1448 1.5160 -7.4575 16 6 4.3840 2.0014 -7.1562 17 6 4.8900 1.8731 -5.8491 18 6 6.1696 2.3726 -5.5291 19 1 6.3718 2.7425 -4.5347 20 6 7.1773 2.3891 -6.5002 21 7 8.2787 3.0634 -6.2888 22 14 6.9501 1.4487 -8.0981 23 1 6.3657 2.3496 -9.1239 24 1 8.2665 0.9493 -8.5701 25 1 6.0373 0.2997 -7.8708 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6886 1.8463 0.8900 30 1 1.6887 1.8463 -0.8900 31 1 6.2045 0.9726 1.7943 32 1 5.5315 0.9583 -3.4093 33 1 2.2386 0.2694 -4.4448 34 1 1.3988 0.5062 -6.7412 35 1 2.7603 1.6165 -8.4617 36 1 4.9758 2.4840 -7.9199 37 1 8.9770 3.0750 -6.9620 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344339830.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:35 Heat of formation + Delta-G solvation = -24.326734 kcal Electronic energy + Delta-G solvation = -23758.481459 eV Core-core repulsion = 20206.167623 eV Total energy + Delta-G solvation = -3552.313835 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -41.71025 -40.72197 -39.07592 -38.53833 -35.68682 -35.51725 -32.59174 -32.32521 -30.76885 -28.98244 -27.26292 -26.83394 -25.60519 -24.24372 -23.11360 -21.78270 -20.61217 -19.66372 -19.32719 -18.63916 -17.69629 -17.59142 -17.14619 -16.63242 -16.41736 -16.26934 -15.93874 -15.77293 -15.44805 -15.11646 -15.00390 -14.69805 -14.26581 -13.95190 -13.91331 -13.47484 -13.32448 -12.87524 -12.70363 -12.54219 -12.45726 -12.31539 -11.81198 -11.63646 -11.23419 -11.20546 -10.91422 -10.81950 -10.68428 -10.49565 -10.10200 -9.50973 -8.93956 -8.86839 -6.48931 -0.94322 0.06908 0.48377 0.66662 0.81953 1.26511 1.30107 1.42502 1.51699 1.95378 2.13306 2.15213 2.62768 2.81322 3.29780 3.47066 3.67046 3.84294 4.04919 4.28357 4.33955 4.42156 4.45778 4.53093 4.59336 4.65013 4.79503 4.81771 4.88600 4.93051 5.16613 5.31532 5.55952 5.67131 5.87438 5.98056 6.10665 6.11090 6.34507 6.40547 6.49046 6.73286 6.78509 7.10293 8.18777 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.015380 B = 0.004558 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.125893 B = 6140.939832 C = 7745.626874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.404 6.404 3 C 0.131 3.869 4 C 0.132 3.868 5 N -0.486 5.486 6 C 0.049 3.951 7 S 0.219 5.781 8 C -0.304 4.304 9 C 0.580 3.420 10 O -0.541 6.541 11 N -0.632 5.632 12 C 0.018 3.982 13 C -0.087 4.087 14 C -0.214 4.214 15 C -0.089 4.089 16 C -0.235 4.235 17 C 0.064 3.936 18 C -0.474 4.474 19 H 0.066 0.934 20 C 0.054 3.946 21 N -0.844 5.844 22 Si 0.961 3.039 23 H -0.260 1.260 24 H -0.281 1.281 25 H -0.252 1.252 26 H 0.100 0.900 27 H 0.060 0.940 28 H 0.041 0.959 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.256 0.744 32 H 0.408 0.592 33 H 0.118 0.882 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.105 0.895 37 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.459 -4.943 10.559 12.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.324 6.324 3 C 0.053 3.947 4 C -0.008 4.008 5 N -0.200 5.200 6 C -0.245 4.245 7 S 0.476 5.524 8 C -0.429 4.429 9 C 0.368 3.632 10 O -0.421 6.421 11 N -0.274 5.274 12 C -0.076 4.076 13 C -0.107 4.107 14 C -0.234 4.234 15 C -0.107 4.107 16 C -0.254 4.254 17 C 0.060 3.940 18 C -0.503 4.503 19 H 0.084 0.916 20 C -0.161 4.161 21 N -0.470 5.470 22 Si 0.786 3.214 23 H -0.186 1.186 24 H -0.208 1.208 25 H -0.175 1.175 26 H 0.118 0.882 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.271 0.729 32 H 0.244 0.756 33 H 0.136 0.864 34 H 0.147 0.853 35 H 0.149 0.851 36 H 0.123 0.877 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.063 -4.993 10.474 12.294 hybrid contribution -0.271 0.297 -0.490 0.634 sum -4.334 -4.696 9.985 11.855 Atomic orbital electron populations 1.22918 0.78810 1.03966 1.00872 1.87837 1.21967 1.26922 1.95645 1.20957 0.85257 0.86048 1.02462 1.20660 0.97493 0.97277 0.85415 1.66040 1.06133 1.17390 1.30394 1.29527 0.94832 0.98770 1.01401 1.84151 1.02362 1.62679 1.03231 1.25750 0.99227 1.19981 0.97901 1.17013 0.86066 0.77005 0.83097 1.90700 1.15308 1.51058 1.85028 1.42738 1.11230 1.69279 1.04178 1.17813 0.97770 1.07204 0.84805 1.20999 0.94582 0.98405 0.96722 1.20765 1.01477 1.08353 0.92780 1.20764 0.93747 0.96886 0.99345 1.20807 0.98198 1.09741 0.96695 1.17714 0.93762 0.90433 0.92082 1.19213 0.94639 1.37055 0.99417 0.91604 1.26684 0.93958 0.93510 1.01971 1.69676 1.07358 1.32735 1.37211 0.85565 0.77386 0.80546 0.77942 1.18595 1.20846 1.17531 0.88156 0.92145 0.94035 0.90172 0.90616 0.72860 0.75571 0.86445 0.85310 0.85149 0.87718 0.89558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 11.01 113.37 1.25 1.93 16 2 O -0.40 -12.74 10.69 -148.98 -1.59 -14.33 16 3 C 0.13 4.03 5.77 71.24 0.41 4.44 16 4 C 0.13 4.18 6.46 42.33 0.27 4.45 16 5 N -0.49 -13.14 10.49 -189.69 -1.99 -15.13 16 6 C 0.05 0.96 12.21 130.61 1.59 2.56 16 7 S 0.22 5.27 22.36 -56.49 -1.26 4.01 16 8 C -0.30 -10.12 6.51 24.10 0.16 -9.96 16 9 C 0.58 23.35 7.62 86.43 0.66 24.01 16 10 O -0.54 -23.71 11.69 -4.36 -0.05 -23.76 16 11 N -0.63 -26.57 4.93 -305.89 -1.51 -28.08 16 12 C 0.02 0.86 6.34 38.92 0.25 1.11 16 13 C -0.09 -3.85 8.69 22.37 0.19 -3.65 16 14 C -0.21 -8.60 10.04 22.41 0.22 -8.38 16 15 C -0.09 -3.60 9.97 22.01 0.22 -3.38 16 16 C -0.23 -10.79 6.94 22.47 0.16 -10.63 16 17 C 0.06 3.17 5.14 -21.17 -0.11 3.06 16 18 C -0.47 -24.62 8.85 23.37 0.21 -24.42 16 19 H 0.07 3.62 7.70 -2.91 -0.02 3.59 16 20 C 0.05 2.72 5.47 85.25 0.47 3.18 16 21 N -0.84 -43.27 13.93 21.83 0.30 -42.97 16 22 Si 0.96 40.62 24.40 68.60 1.67 42.30 16 23 H -0.26 -10.50 6.67 99.48 0.66 -9.84 16 24 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 25 H -0.25 -10.92 6.68 99.48 0.66 -10.25 16 26 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.08 2.57 6.05 -2.39 -0.01 2.56 16 31 H 0.26 2.22 8.06 -2.91 -0.02 2.20 16 32 H 0.41 16.07 7.23 -92.71 -0.67 15.40 16 33 H 0.12 5.19 6.15 -2.91 -0.02 5.17 16 34 H 0.13 4.34 8.06 -2.91 -0.02 4.31 16 35 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 36 H 0.11 4.72 4.42 -2.91 -0.01 4.71 16 37 H 0.29 13.64 8.30 -92.71 -0.77 12.87 16 Total: -1.00 -65.16 326.55 1.90 -63.26 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: 0.38 Total: 30.40 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: 5.95 Total: -15.69 kcal Atomic # 7 Polarization: -82.99 SS G_CDS: -3.19 Total: -86.18 kcal Atomic # 8 Polarization: -36.45 SS G_CDS: -1.64 Total: -38.10 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 1.67 Total: 42.30 kcal Atomic # 16 Polarization: 5.27 SS G_CDS: -1.26 Total: 4.01 kcal Total: -65.16 1.90 -63.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344339830.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.930 kcal (2) G-P(sol) polarization free energy of solvation -65.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds