Wall clock time and date at job start Tue Mar 31 2020 11:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34334 * 126.44114 * 2 1 4 4 N 1.34480 * 107.66806 * 179.76840 * 3 2 1 5 5 C 1.30256 * 108.69777 * 0.42659 * 4 3 2 6 6 C 1.50708 * 125.61576 * 179.83934 * 5 4 3 7 7 N 1.46497 * 109.47012 * 89.69154 * 6 5 4 8 8 C 1.34784 * 119.99731 * 180.02562 * 7 6 5 9 9 O 1.21547 * 120.00044 * 0.02562 * 8 7 6 10 10 C 1.47861 * 119.99856 * 179.97438 * 8 7 6 11 11 C 1.39677 * 120.10216 * 0.02562 * 10 8 7 12 12 C 1.38038 * 120.03792 * 179.97438 * 11 10 8 13 13 C 1.38179 * 120.24737 * 0.02595 * 12 11 10 14 14 C 1.39179 * 120.19772 * 359.97438 * 13 12 11 15 15 S 1.76197 * 120.01806 * 180.02562 * 14 13 12 16 16 C 1.76200 * 100.00047 * 265.46440 * 15 14 13 17 17 H 1.07999 * 119.99978 * 5.11492 * 16 15 14 18 18 C 1.38729 * 119.99984 * 185.12262 * 16 15 14 19 19 N 1.31620 * 120.00105 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99964 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.46927 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47203 * 119.99524 * 20 18 16 23 23 H 1.48493 * 109.46954 * 239.99797 * 20 18 16 24 24 C 1.38874 * 119.96151 * 359.97438 * 14 13 12 25 25 O 1.33968 * 108.76368 * 359.57440 * 5 4 3 26 26 H 1.08998 * 109.46892 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46996 * 299.99455 * 1 2 3 28 28 H 1.08996 * 109.47221 * 59.99808 * 1 2 3 29 29 H 1.07998 * 126.16368 * 0.02685 * 3 2 1 30 30 H 1.09004 * 109.47017 * 329.69085 * 6 5 4 31 31 H 1.08999 * 109.46903 * 209.68840 * 6 5 4 32 32 H 0.96999 * 120.00204 * 359.97438 * 7 6 5 33 33 H 1.08003 * 119.98186 * 359.97438 * 11 10 8 34 34 H 1.08005 * 119.87886 * 180.02562 * 12 11 10 35 35 H 1.07990 * 119.89999 * 179.97438 * 13 12 11 36 36 H 0.97003 * 120.00406 * 180.02562 * 19 18 16 37 37 H 1.08006 * 120.12264 * 180.30251 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0807 0.0000 4 7 3.5782 0.6479 0.0052 5 6 3.5765 -0.6547 -0.0009 6 6 4.8005 -1.5339 -0.0015 7 7 5.1975 -1.8191 1.3795 8 6 6.2742 -2.5919 1.6252 9 8 6.9159 -3.0516 0.7010 10 6 6.6752 -2.8793 3.0191 11 6 5.9396 -2.3516 4.0827 12 6 6.3149 -2.6213 5.3834 13 6 7.4183 -3.4126 5.6397 14 6 8.1586 -3.9436 4.5875 15 16 9.5643 -4.9525 4.9197 16 6 10.8380 -3.7374 4.8430 17 1 10.5835 -2.6956 4.7156 18 6 12.1678 -4.1190 4.9461 19 7 12.4780 -5.3887 5.1017 20 14 13.5182 -2.8309 4.8641 21 1 12.9108 -1.4877 4.6861 22 1 14.3038 -2.8564 6.1240 23 1 14.4135 -3.1248 3.7164 24 6 7.7879 -3.6786 3.2756 25 8 2.3075 -1.0840 -0.0006 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.9821 2.1113 0.0004 30 1 5.6147 -1.0228 -0.5155 31 1 4.5762 -2.4685 -0.5155 32 1 4.6860 -1.4513 2.1170 33 1 5.0766 -1.7323 3.8873 34 1 5.7439 -2.2123 6.2040 35 1 7.7071 -3.6196 6.6595 36 1 13.4078 -5.6555 5.1742 37 1 8.3576 -4.0933 2.4571 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430694556.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:56 Heat of formation + Delta-G solvation = 10.834771 kcal Electronic energy + Delta-G solvation = -22234.627712 eV Core-core repulsion = 18683.838594 eV Total energy + Delta-G solvation = -3550.789118 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.79420 -40.02374 -37.91179 -35.48197 -35.00830 -32.93214 -32.50468 -31.18338 -30.57092 -28.86750 -25.82990 -25.56683 -23.50775 -22.72030 -22.22121 -21.46905 -20.55837 -18.63686 -17.63793 -17.28888 -17.04241 -16.12157 -15.76028 -15.47067 -15.16097 -14.84634 -14.79799 -14.37779 -14.21754 -13.76879 -13.62083 -13.44927 -13.33958 -13.21834 -12.92955 -12.82098 -12.24639 -11.77468 -11.66822 -11.17097 -11.12799 -11.09886 -10.96035 -10.70382 -10.07858 -9.87520 -9.40066 -9.18705 -9.14731 -9.02517 -8.62255 -8.03975 -6.71499 -6.28480 -4.02494 0.87499 1.11776 1.64589 2.07375 2.18118 2.96766 3.09405 3.20308 3.23263 3.29715 3.46883 3.56085 4.06809 4.24874 4.28739 4.53948 4.61359 4.72369 4.86290 4.98925 5.05644 5.08155 5.09939 5.20708 5.23976 5.41790 5.47395 5.58453 5.70766 5.82524 5.84814 5.94153 6.06300 6.22889 6.54561 6.61468 6.90533 7.15588 7.26856 7.31093 7.58345 8.13312 8.33416 9.17641 10.78272 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.023618 B = 0.002443 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.236058 B =11456.602873 C =11859.250264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.039 4.039 3 C -0.046 4.046 4 N -0.458 5.458 5 C 0.169 3.831 6 C 0.223 3.777 7 N -0.731 5.731 8 C 0.571 3.429 9 O -0.528 6.528 10 C -0.154 4.154 11 C -0.089 4.089 12 C -0.141 4.141 13 C -0.053 4.053 14 C -0.107 4.107 15 S -0.034 6.034 16 C -0.519 4.519 17 H 0.077 0.923 18 C 0.073 3.927 19 N -0.870 5.870 20 Si 0.921 3.079 21 H -0.270 1.270 22 H -0.279 1.279 23 H -0.278 1.278 24 C -0.016 4.016 25 O -0.194 6.194 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.186 0.814 30 H 0.114 0.886 31 H 0.099 0.901 32 H 0.403 0.597 33 H 0.116 0.884 34 H 0.124 0.876 35 H 0.132 0.868 36 H 0.269 0.731 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.166 10.715 -6.889 27.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.092 4.092 3 C -0.185 4.185 4 N -0.188 5.188 5 C -0.038 4.038 6 C 0.099 3.901 7 N -0.387 5.387 8 C 0.360 3.640 9 O -0.405 6.405 10 C -0.159 4.159 11 C -0.108 4.108 12 C -0.160 4.160 13 C -0.074 4.074 14 C -0.218 4.218 15 S 0.200 5.800 16 C -0.666 4.666 17 H 0.095 0.905 18 C -0.136 4.136 19 N -0.505 5.505 20 Si 0.747 3.253 21 H -0.195 1.195 22 H -0.205 1.205 23 H -0.204 1.204 24 C -0.038 4.038 25 O -0.081 6.081 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.203 0.797 30 H 0.131 0.869 31 H 0.117 0.883 32 H 0.239 0.761 33 H 0.133 0.867 34 H 0.142 0.858 35 H 0.150 0.850 36 H 0.079 0.921 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -22.876 9.378 -7.340 25.791 hybrid contribution -0.268 2.091 0.018 2.108 sum -23.144 11.469 -7.322 26.848 Atomic orbital electron populations 1.20329 0.83689 1.04627 1.04105 1.23622 0.95244 0.84527 1.05855 1.23153 0.87581 1.00616 1.07136 1.70496 1.23262 1.09000 1.16017 1.26076 0.84243 0.90299 1.03181 1.19461 0.88070 0.97088 0.85512 1.45845 1.31598 1.53807 1.07409 1.18381 0.79028 0.77245 0.89373 1.90797 1.52817 1.51176 1.45678 1.19754 0.99956 1.04772 0.91424 1.21129 0.98363 0.98534 0.92745 1.21057 0.98286 1.00557 0.96137 1.21977 0.92947 0.92875 0.99617 1.22862 1.02562 1.02324 0.94005 1.83616 0.92924 1.12039 1.91407 1.22882 0.91571 0.94253 1.57929 0.90530 1.25009 0.98048 0.96191 0.94377 1.69993 1.19099 1.15039 1.46401 0.86062 0.80526 0.80743 0.77957 1.19478 1.20492 1.20420 1.21960 0.92467 0.92125 0.97245 1.84435 1.17724 1.36592 1.69312 0.90162 0.89038 0.89094 0.79657 0.86867 0.88266 0.76118 0.86661 0.85817 0.84994 0.92102 0.84152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.25 10.43 36.01 0.38 0.13 16 2 C -0.04 -0.30 7.39 -35.69 -0.26 -0.56 16 3 C -0.05 -0.39 11.80 -17.77 -0.21 -0.60 16 4 N -0.46 -5.20 11.29 -11.10 -0.13 -5.32 16 5 C 0.17 1.78 7.71 -12.94 -0.10 1.68 16 6 C 0.22 2.36 6.30 -5.19 -0.03 2.33 16 7 N -0.73 -8.66 5.50 -62.42 -0.34 -9.01 16 8 C 0.57 9.02 7.77 -12.32 -0.10 8.92 16 9 O -0.53 -10.06 16.34 5.32 0.09 -9.98 16 10 C -0.15 -2.57 5.87 -105.00 -0.62 -3.19 16 11 C -0.09 -1.22 9.54 -39.12 -0.37 -1.59 16 12 C -0.14 -2.01 10.02 -39.68 -0.40 -2.41 16 13 C -0.05 -0.94 9.79 -39.25 -0.38 -1.33 16 14 C -0.11 -2.27 5.45 -39.00 -0.21 -2.48 16 15 S -0.03 -0.88 21.41 -107.50 -2.30 -3.19 16 16 C -0.52 -14.64 9.46 30.91 0.29 -14.35 16 17 H 0.08 2.15 7.79 -52.49 -0.41 1.74 16 18 C 0.07 2.04 5.49 -17.46 -0.10 1.95 16 19 N -0.87 -25.44 13.22 55.49 0.73 -24.71 16 20 Si 0.92 21.54 29.55 -169.99 -5.02 16.52 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 24 C -0.02 -0.33 9.34 -38.92 -0.36 -0.69 16 25 O -0.19 -1.94 10.78 5.37 0.06 -1.88 16 26 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 28 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 29 H 0.19 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.40 4.03 6.49 -40.82 -0.27 3.76 16 33 H 0.12 1.16 6.40 -52.48 -0.34 0.83 16 34 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 35 H 0.13 2.22 8.06 -52.49 -0.42 1.80 16 36 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.14 3.04 7.65 -52.48 -0.40 2.64 16 LS Contribution 347.30 15.07 5.23 5.23 Total: -1.00 -34.28 347.30 -8.09 -42.37 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -3.93 Total: 2.16 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -2.48 Total: -12.19 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.26 Total: -39.04 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.14 Total: -11.86 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -0.88 SS G_CDS: -2.30 Total: -3.19 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.28 -8.09 -42.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430694556.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.205 kcal (2) G-P(sol) polarization free energy of solvation -34.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds