Wall clock time and date at job start Tue Mar 31 2020 12:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00268 * 2 1 4 4 H 1.48500 * 109.46708 * 264.94201 * 3 2 1 5 5 H 1.48500 * 109.46922 * 24.93739 * 3 2 1 6 6 H 1.48488 * 109.47241 * 144.93647 * 3 2 1 7 7 C 1.37879 * 119.99500 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00543 * 0.92445 * 7 2 1 9 9 C 1.50705 * 119.99431 * 180.92340 * 7 2 1 10 10 C 1.53002 * 115.55167 * 86.89533 * 9 7 2 11 11 N 1.46503 * 109.46989 * 64.93317 * 10 9 7 12 12 C 1.34774 * 119.99779 * 184.40441 * 11 10 9 13 13 O 1.21671 * 120.00213 * 5.10440 * 12 11 10 14 14 C 1.46873 * 120.00138 * 185.10976 * 12 11 10 15 15 N 1.38352 * 125.45397 * 357.73557 * 14 12 11 16 16 H 0.96996 * 125.60787 * 359.44817 * 15 14 12 17 17 C 1.37513 * 108.78265 * 180.09765 * 15 14 12 18 18 C 1.39236 * 133.12867 * 179.31804 * 17 15 14 19 19 C 1.37674 * 119.81232 * 179.97438 * 18 17 15 20 20 C 1.38931 * 120.63705 * 0.02562 * 19 18 17 21 21 C 1.36452 * 120.61499 * 359.97438 * 20 19 18 22 22 C 1.40079 * 119.83677 * 0.25077 * 21 20 19 23 23 C 1.36026 * 125.46153 * 177.14370 * 14 12 11 24 24 Cl 1.73600 * 126.15096 * 0.02562 * 23 14 12 25 25 C 1.53002 * 117.49603 * 232.55932 * 9 7 2 26 26 C 1.52994 * 117.49949 * 301.22160 * 9 7 2 27 27 H 0.97003 * 119.99607 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.46771 * 304.94016 * 10 9 7 29 29 H 1.08999 * 109.47235 * 184.93577 * 10 9 7 30 30 H 0.96997 * 120.00286 * 4.40050 * 11 10 9 31 31 H 1.07991 * 120.08995 * 0.02562 * 18 17 15 32 32 H 1.07992 * 119.68402 * 180.02562 * 19 18 17 33 33 H 1.08004 * 119.69281 * 180.02562 * 20 19 18 34 34 H 1.08003 * 120.07807 * 179.97438 * 21 20 19 35 35 H 1.09000 * 117.49759 * 214.99980 * 25 9 7 36 36 H 1.08995 * 117.50015 * 0.03074 * 25 9 7 37 37 H 1.08997 * 117.50370 * 359.97438 * 26 9 7 38 38 H 1.09003 * 117.49656 * 144.97726 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.6036 1.9846 -1.3947 5 1 1.3973 2.6812 0.5903 6 1 3.4891 1.4734 0.8042 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1293 -0.0141 9 6 3.5114 -1.1942 0.0216 10 6 4.1520 -1.1299 1.4095 11 7 3.8242 -2.3475 2.1555 12 6 4.2086 -2.4741 3.4410 13 8 4.7454 -1.5423 4.0101 14 6 3.9795 -3.7371 4.1550 15 7 3.3422 -4.8492 3.6342 16 1 2.9678 -4.9195 2.7422 17 6 3.3141 -5.8334 4.5942 18 6 2.7967 -7.1259 4.6175 19 6 2.9252 -7.8942 5.7526 20 6 3.5666 -7.3925 6.8783 21 6 4.0816 -6.1289 6.8793 22 6 3.9596 -5.3256 5.7382 23 6 4.3699 -4.0047 5.4303 24 17 5.2182 -2.9225 6.4900 25 6 4.2328 -2.0111 -1.0523 26 6 4.2339 -0.4820 -1.1236 27 1 -0.4850 0.8401 -0.0004 28 1 3.7702 -0.2613 1.9460 29 1 5.2340 -1.0470 1.3068 30 1 3.3304 -3.0624 1.7242 31 1 2.2969 -7.5247 3.7473 32 1 2.5235 -8.8965 5.7683 33 1 3.6591 -8.0087 7.7605 34 1 4.5781 -5.7475 7.7593 35 1 5.1638 -2.5026 -0.7700 36 1 3.6175 -2.5480 -1.7742 37 1 3.6194 -0.0137 -1.8925 38 1 5.1654 0.0327 -0.8881 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435955522.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:35 Heat of formation + Delta-G solvation = 42.412171 kcal Electronic energy + Delta-G solvation = -23425.306237 eV Core-core repulsion = 19873.842711 eV Total energy + Delta-G solvation = -3551.463526 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.70540 -39.17270 -37.28900 -36.80539 -36.32819 -33.69440 -32.21809 -32.12999 -29.87208 -29.10239 -26.97931 -25.48150 -23.51324 -22.36529 -21.85791 -21.23953 -19.99786 -19.42918 -18.33771 -17.22599 -16.68072 -16.05158 -15.48006 -15.35003 -15.04942 -14.68883 -14.49717 -14.18702 -14.03856 -13.90306 -13.60863 -13.09393 -12.89138 -12.59151 -12.22826 -12.08328 -11.95147 -11.71770 -11.27434 -11.24846 -10.89567 -10.79750 -10.56812 -10.29548 -9.87684 -9.73057 -9.64648 -9.30411 -8.78978 -8.67187 -8.58870 -8.40656 -7.85550 -6.24083 -4.30043 0.59240 1.39788 1.94304 2.12280 2.93433 3.23364 3.33961 3.34908 3.41811 3.44945 3.67227 4.32814 4.44800 4.65985 4.80618 4.86722 4.98269 5.03842 5.11620 5.27308 5.35954 5.44435 5.56890 5.79267 5.90024 5.94842 6.09365 6.13532 6.24863 6.29031 6.31655 6.37281 6.40533 6.59883 6.79370 6.84031 6.92680 6.97289 7.15095 7.57744 7.86627 8.30177 8.43613 8.73889 9.38600 10.87046 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.017574 B = 0.003604 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.871983 B = 7767.219413 C = 8381.496100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.082 3.918 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.259 1.259 7 C -0.495 4.495 8 H 0.077 0.923 9 C -0.018 4.018 10 C 0.155 3.845 11 N -0.696 5.696 12 C 0.568 3.432 13 O -0.516 6.516 14 C 0.049 3.951 15 N -0.567 5.567 16 H 0.427 0.573 17 C 0.120 3.880 18 C -0.128 4.128 19 C -0.088 4.088 20 C -0.147 4.147 21 C -0.058 4.058 22 C -0.109 4.109 23 C -0.047 4.047 24 Cl -0.019 7.019 25 C -0.179 4.179 26 C -0.192 4.192 27 H 0.267 0.733 28 H 0.072 0.928 29 H 0.048 0.952 30 H 0.398 0.602 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.678 -14.439 9.553 18.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.122 4.122 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.183 1.183 7 C -0.532 4.532 8 H 0.095 0.905 9 C -0.019 4.019 10 C 0.032 3.968 11 N -0.344 5.344 12 C 0.353 3.647 13 O -0.392 6.392 14 C -0.063 4.063 15 N -0.172 5.172 16 H 0.267 0.733 17 C 0.010 3.990 18 C -0.149 4.149 19 C -0.108 4.108 20 C -0.166 4.166 21 C -0.077 4.077 22 C -0.114 4.114 23 C -0.083 4.083 24 Cl 0.010 6.990 25 C -0.217 4.217 26 C -0.230 4.230 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.233 0.767 31 H 0.145 0.855 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.091 0.909 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.947 -13.460 9.859 18.480 hybrid contribution -0.112 0.700 -0.712 1.005 sum 7.835 -12.759 9.147 17.546 Atomic orbital electron populations 1.69875 1.06409 1.27459 1.49165 1.24970 0.94603 0.99221 0.93417 0.86851 0.80421 0.83128 0.78770 1.20167 1.22021 1.18305 1.20137 0.85938 0.94495 1.52593 0.90510 1.19627 0.95274 1.01030 0.85969 1.21259 0.96966 0.86083 0.92471 1.45732 1.56258 1.21482 1.10973 1.17055 0.80326 0.85356 0.82003 1.90876 1.43380 1.38211 1.66689 1.20133 1.03093 0.89069 0.94049 1.41959 1.49935 1.10588 1.14741 0.73291 1.18221 1.01052 0.91249 0.88505 1.20112 1.03675 0.91088 1.00009 1.20895 0.98247 0.99330 0.92288 1.20632 1.01226 0.95907 0.98882 1.20381 0.97901 0.93241 0.96131 1.17899 1.04794 0.93188 0.95497 1.19914 1.04783 0.91968 0.91635 1.98354 1.74858 1.62490 1.63266 1.22862 1.01108 0.93226 1.04473 1.22971 1.01493 0.94871 1.03625 0.92340 0.90962 0.93427 0.76745 0.85490 0.85387 0.85708 0.85584 0.90856 0.89341 0.88969 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.92 13.96 55.43 0.77 -25.15 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 3 Si 0.88 21.04 24.76 -169.99 -4.21 16.83 16 4 H -0.28 -6.40 7.01 56.52 0.40 -6.00 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.26 -5.96 5.99 56.52 0.34 -5.62 16 7 C -0.49 -12.52 9.30 -34.44 -0.32 -12.84 16 8 H 0.08 2.09 8.06 -52.49 -0.42 1.66 16 9 C -0.02 -0.37 0.85 -155.66 -0.13 -0.50 16 10 C 0.16 3.12 5.23 -4.04 -0.02 3.10 16 11 N -0.70 -12.38 5.45 -61.56 -0.34 -12.71 16 12 C 0.57 10.35 7.79 -12.77 -0.10 10.25 16 13 O -0.52 -10.86 15.38 5.21 0.08 -10.78 16 14 C 0.05 0.76 6.97 -82.22 -0.57 0.19 16 15 N -0.57 -7.11 6.08 -7.32 -0.04 -7.16 16 16 H 0.43 4.35 8.13 -40.82 -0.33 4.01 16 17 C 0.12 1.47 7.25 -83.97 -0.61 0.86 16 18 C -0.13 -1.25 10.08 -39.42 -0.40 -1.65 16 19 C -0.09 -0.75 10.02 -39.53 -0.40 -1.15 16 20 C -0.15 -1.32 9.97 -39.97 -0.40 -1.71 16 21 C -0.06 -0.63 10.06 -39.54 -0.40 -1.03 16 22 C -0.11 -1.45 6.16 -106.90 -0.66 -2.11 16 23 C -0.05 -0.72 6.72 -39.05 -0.26 -0.99 16 24 Cl -0.02 -0.28 27.68 -51.86 -1.44 -1.72 16 25 C -0.18 -3.23 9.96 -26.69 -0.27 -3.50 16 26 C -0.19 -3.76 7.59 -26.69 -0.20 -3.97 16 27 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.07 1.64 6.75 -51.93 -0.35 1.29 16 29 H 0.05 0.90 8.09 -51.93 -0.42 0.48 16 30 H 0.40 6.31 7.51 -40.82 -0.31 6.00 16 31 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.12 0.80 8.06 -52.48 -0.42 0.37 16 34 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 37 H 0.09 1.91 7.07 -51.93 -0.37 1.55 16 38 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 337.37 15.07 5.08 5.08 Total: -1.00 -30.77 337.37 -9.28 -40.04 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -4.36 Total: 8.48 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -4.83 Total: -12.93 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: 0.39 Total: -45.02 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.08 Total: -10.78 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.21 Total: 16.83 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.44 Total: -1.72 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.77 -9.28 -40.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435955522.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.456 kcal (2) G-P(sol) polarization free energy of solvation -30.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds