Wall clock time and date at job start Tue Mar 31 2020 12:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00268 * 2 1 4 4 H 1.48500 * 109.46708 * 264.94201 * 3 2 1 5 5 H 1.48500 * 109.46922 * 24.93739 * 3 2 1 6 6 H 1.48488 * 109.47241 * 144.93647 * 3 2 1 7 7 C 1.37879 * 119.99500 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00543 * 0.92445 * 7 2 1 9 9 C 1.50705 * 119.99431 * 180.92340 * 7 2 1 10 10 C 1.53002 * 115.55167 * 86.89533 * 9 7 2 11 11 N 1.46503 * 109.46989 * 64.93317 * 10 9 7 12 12 C 1.34774 * 119.99779 * 184.40441 * 11 10 9 13 13 O 1.21671 * 120.00213 * 5.10440 * 12 11 10 14 14 C 1.46873 * 120.00138 * 185.10976 * 12 11 10 15 15 N 1.38352 * 125.45397 * 357.73557 * 14 12 11 16 16 H 0.96996 * 125.60787 * 359.44817 * 15 14 12 17 17 C 1.37513 * 108.78265 * 180.09765 * 15 14 12 18 18 C 1.39236 * 133.12867 * 179.31804 * 17 15 14 19 19 C 1.37674 * 119.81232 * 179.97438 * 18 17 15 20 20 C 1.38931 * 120.63705 * 0.02562 * 19 18 17 21 21 C 1.36452 * 120.61499 * 359.97438 * 20 19 18 22 22 C 1.40079 * 119.83677 * 0.25077 * 21 20 19 23 23 C 1.36026 * 125.46153 * 177.14370 * 14 12 11 24 24 Cl 1.73600 * 126.15096 * 0.02562 * 23 14 12 25 25 C 1.53002 * 117.49603 * 232.55932 * 9 7 2 26 26 C 1.52994 * 117.49949 * 301.22160 * 9 7 2 27 27 H 0.97003 * 119.99607 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.46771 * 304.94016 * 10 9 7 29 29 H 1.08999 * 109.47235 * 184.93577 * 10 9 7 30 30 H 0.96997 * 120.00286 * 4.40050 * 11 10 9 31 31 H 1.07991 * 120.08995 * 0.02562 * 18 17 15 32 32 H 1.07992 * 119.68402 * 180.02562 * 19 18 17 33 33 H 1.08004 * 119.69281 * 180.02562 * 20 19 18 34 34 H 1.08003 * 120.07807 * 179.97438 * 21 20 19 35 35 H 1.09000 * 117.49759 * 214.99980 * 25 9 7 36 36 H 1.08995 * 117.50015 * 0.03074 * 25 9 7 37 37 H 1.08997 * 117.50370 * 359.97438 * 26 9 7 38 38 H 1.09003 * 117.49656 * 144.97726 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.6036 1.9846 -1.3947 5 1 1.3973 2.6812 0.5903 6 1 3.4891 1.4734 0.8042 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1293 -0.0141 9 6 3.5114 -1.1942 0.0216 10 6 4.1520 -1.1299 1.4095 11 7 3.8242 -2.3475 2.1555 12 6 4.2086 -2.4741 3.4410 13 8 4.7454 -1.5423 4.0101 14 6 3.9795 -3.7371 4.1550 15 7 3.3422 -4.8492 3.6342 16 1 2.9678 -4.9195 2.7422 17 6 3.3141 -5.8334 4.5942 18 6 2.7967 -7.1259 4.6175 19 6 2.9252 -7.8942 5.7526 20 6 3.5666 -7.3925 6.8783 21 6 4.0816 -6.1289 6.8793 22 6 3.9596 -5.3256 5.7382 23 6 4.3699 -4.0047 5.4303 24 17 5.2182 -2.9225 6.4900 25 6 4.2328 -2.0111 -1.0523 26 6 4.2339 -0.4820 -1.1236 27 1 -0.4850 0.8401 -0.0004 28 1 3.7702 -0.2613 1.9460 29 1 5.2340 -1.0470 1.3068 30 1 3.3304 -3.0624 1.7242 31 1 2.2969 -7.5247 3.7473 32 1 2.5235 -8.8965 5.7683 33 1 3.6591 -8.0087 7.7605 34 1 4.5781 -5.7475 7.7593 35 1 5.1638 -2.5026 -0.7700 36 1 3.6175 -2.5480 -1.7742 37 1 3.6194 -0.0137 -1.8925 38 1 5.1654 0.0327 -0.8881 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435955522.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:34 Heat of formation + Delta-G solvation = 22.902302 kcal Electronic energy + Delta-G solvation = -23426.152248 eV Core-core repulsion = 19873.842711 eV Total energy + Delta-G solvation = -3552.309537 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.69403 -40.56249 -38.78943 -37.79725 -37.46618 -35.18924 -34.24228 -33.03415 -30.84273 -30.06390 -28.51752 -27.29811 -24.64316 -23.39621 -23.21426 -22.24578 -21.38614 -20.97168 -19.56767 -18.40718 -18.18002 -17.19271 -16.94824 -16.72328 -16.56281 -15.85126 -15.58718 -15.52328 -15.19731 -14.82718 -14.79944 -14.68217 -14.37181 -14.30174 -13.80821 -13.12514 -13.08733 -12.82587 -12.69336 -12.58925 -12.21751 -12.13565 -12.02561 -11.87744 -11.63427 -11.18681 -11.01747 -10.69793 -10.67203 -10.40878 -10.07280 -9.35090 -8.80987 -8.32906 -6.39507 -0.39954 0.58997 0.92456 1.02232 1.32387 1.38938 1.46979 1.85267 2.09081 2.12192 2.34100 2.87413 3.02725 3.18335 3.56858 3.63801 3.97108 4.03297 4.18324 4.23797 4.33105 4.38201 4.47083 4.47856 4.50123 4.64990 4.78962 4.85647 5.07531 5.07546 5.23599 5.25778 5.34362 5.41605 5.47891 5.52985 5.64139 5.66477 6.03404 6.23900 6.25409 6.48520 6.69214 7.03037 7.31830 8.81438 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.017574 B = 0.003604 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.871983 B = 7767.219413 C = 8381.496100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.028 3.972 3 Si 0.927 3.073 4 H -0.261 1.261 5 H -0.305 1.305 6 H -0.245 1.245 7 C -0.479 4.479 8 H 0.047 0.953 9 C -0.042 4.042 10 C 0.164 3.836 11 N -0.692 5.692 12 C 0.569 3.431 13 O -0.551 6.551 14 C 0.023 3.977 15 N -0.558 5.558 16 H 0.435 0.565 17 C 0.114 3.886 18 C -0.136 4.136 19 C -0.076 4.076 20 C -0.139 4.139 21 C -0.073 4.073 22 C -0.134 4.134 23 C -0.053 4.053 24 Cl -0.029 7.029 25 C -0.149 4.149 26 C -0.193 4.193 27 H 0.264 0.736 28 H 0.041 0.959 29 H 0.065 0.935 30 H 0.407 0.593 31 H 0.151 0.849 32 H 0.165 0.835 33 H 0.156 0.844 34 H 0.133 0.867 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.025 -17.019 9.786 21.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.171 4.171 3 Si 0.754 3.246 4 H -0.186 1.186 5 H -0.233 1.233 6 H -0.169 1.169 7 C -0.517 4.517 8 H 0.065 0.935 9 C -0.043 4.043 10 C 0.040 3.960 11 N -0.341 5.341 12 C 0.356 3.644 13 O -0.430 6.430 14 C -0.090 4.090 15 N -0.165 5.165 16 H 0.277 0.723 17 C 0.003 3.997 18 C -0.156 4.156 19 C -0.095 4.095 20 C -0.158 4.158 21 C -0.091 4.091 22 C -0.139 4.139 23 C -0.090 4.090 24 Cl 0.000 7.000 25 C -0.186 4.186 26 C -0.231 4.231 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.243 0.757 31 H 0.168 0.832 32 H 0.182 0.818 33 H 0.174 0.826 34 H 0.151 0.849 35 H 0.123 0.877 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 9.307 -16.076 10.063 21.126 hybrid contribution -0.568 1.259 -0.700 1.549 sum 8.738 -14.817 9.363 19.585 Atomic orbital electron populations 1.70007 1.08064 1.27904 1.52280 1.25693 0.95073 1.02436 0.93887 0.86079 0.79609 0.79441 0.79518 1.18629 1.23318 1.16864 1.20347 0.88492 0.92909 1.49945 0.93458 1.19444 0.92878 1.04714 0.87286 1.21007 0.97642 0.85864 0.91478 1.45642 1.56399 1.21088 1.11019 1.17343 0.79407 0.85901 0.81791 1.90842 1.45021 1.39716 1.67376 1.19696 1.05698 0.89170 0.94390 1.41843 1.49532 1.09866 1.15225 0.72307 1.18592 1.01119 0.92023 0.87929 1.20505 1.03556 0.90003 1.01571 1.21408 0.96377 1.00499 0.91217 1.21065 0.99436 0.95136 1.00138 1.20621 0.98690 0.94058 0.95761 1.18125 1.06007 0.92688 0.97068 1.20211 1.04519 0.92779 0.91514 1.98338 1.75090 1.63039 1.63504 1.22898 1.01465 0.92479 1.01803 1.23041 1.01844 0.96296 1.01898 0.92698 0.94088 0.91651 0.75741 0.83167 0.81788 0.82611 0.84862 0.87699 0.89386 0.90261 0.88204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.67 13.96 21.45 0.30 -56.37 16 2 C 0.03 1.52 5.47 84.65 0.46 1.98 16 3 Si 0.93 43.65 24.76 68.60 1.70 45.35 16 4 H -0.26 -11.58 7.01 99.48 0.70 -10.88 16 5 H -0.31 -14.88 7.11 99.48 0.71 -14.17 16 6 H -0.25 -10.90 5.99 99.48 0.60 -10.31 16 7 C -0.48 -24.59 9.30 25.60 0.24 -24.35 16 8 H 0.05 2.64 8.06 -2.91 -0.02 2.62 16 9 C -0.04 -1.71 0.85 -52.93 -0.04 -1.76 16 10 C 0.16 6.47 5.23 86.38 0.45 6.92 16 11 N -0.69 -24.57 5.45 -466.89 -2.54 -27.12 16 12 C 0.57 21.05 7.79 86.50 0.67 21.72 16 13 O -0.55 -23.75 15.38 -4.26 -0.07 -23.81 16 14 C 0.02 0.71 6.97 39.86 0.28 0.99 16 15 N -0.56 -13.71 6.08 -177.08 -1.08 -14.79 16 16 H 0.44 8.59 8.13 -92.71 -0.75 7.84 16 17 C 0.11 2.62 7.25 39.13 0.28 2.90 16 18 C -0.14 -2.22 10.08 22.38 0.23 -2.00 16 19 C -0.08 -0.96 10.02 22.30 0.22 -0.74 16 20 C -0.14 -1.97 9.97 22.02 0.22 -1.75 16 21 C -0.07 -1.45 10.06 22.30 0.22 -1.22 16 22 C -0.13 -3.47 6.16 -21.34 -0.13 -3.61 16 23 C -0.05 -1.66 6.72 22.61 0.15 -1.51 16 24 Cl -0.03 -0.89 27.68 -2.72 -0.08 -0.97 16 25 C -0.15 -4.95 9.96 30.62 0.30 -4.65 16 26 C -0.19 -7.08 7.59 30.62 0.23 -6.85 16 27 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 28 H 0.04 1.87 6.75 -2.39 -0.02 1.85 16 29 H 0.07 2.35 8.09 -2.39 -0.02 2.33 16 30 H 0.41 12.82 7.51 -92.71 -0.70 12.12 16 31 H 0.15 1.71 8.06 -2.92 -0.02 1.69 16 32 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 33 H 0.16 1.24 8.06 -2.91 -0.02 1.21 16 34 H 0.13 2.35 8.06 -2.91 -0.02 2.33 16 35 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 36 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 37 H 0.08 3.13 7.07 -2.39 -0.02 3.11 16 38 H 0.10 3.20 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -69.13 337.37 1.58 -67.55 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: -0.45 Total: 24.06 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 3.79 Total: -13.91 kcal Atomic # 7 Polarization: -94.95 SS G_CDS: -3.32 Total: -98.27 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.07 Total: -23.81 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.70 Total: 45.35 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -0.08 Total: -0.97 kcal Total: -69.13 1.58 -67.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435955522.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.450 kcal (2) G-P(sol) polarization free energy of solvation -69.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds