Wall clock time and date at job start Tue Mar 31 2020 12:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42906 * 113.99372 * 2 1 4 4 C 1.50706 * 109.46307 * 180.02562 * 3 2 1 5 5 N 1.28468 * 124.44370 * 90.00230 * 4 3 2 6 6 C 1.32717 * 117.40681 * 179.70081 * 5 4 3 7 7 C 1.46883 * 123.36587 * 180.35046 * 6 5 4 8 8 O 1.21717 * 120.00127 * 174.72183 * 7 6 5 9 9 N 1.34777 * 120.00079 * 354.72250 * 7 6 5 10 10 C 1.36894 * 120.00009 * 179.97438 * 9 7 6 11 11 H 1.07997 * 120.00031 * 0.02562 * 10 9 7 12 12 C 1.39006 * 119.99950 * 180.02562 * 10 9 7 13 13 N 1.31405 * 119.99865 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00091 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46975 * 90.00049 * 14 12 10 16 16 H 1.48496 * 109.46757 * 209.99741 * 14 12 10 17 17 H 1.48500 * 109.47034 * 329.99903 * 14 12 10 18 18 C 1.38012 * 113.27235 * 0.51706 * 6 5 4 19 19 C 1.47622 * 126.21001 * 179.78819 * 18 6 5 20 20 C 1.39676 * 120.15293 * 123.79028 * 19 18 6 21 21 C 1.37928 * 119.84081 * 179.74925 * 20 19 18 22 22 C 1.38376 * 120.15880 * 0.55049 * 21 20 19 23 23 C 1.38384 * 120.30573 * 359.70451 * 22 21 20 24 24 C 1.37925 * 120.15814 * 0.02562 * 23 22 21 25 25 S 1.70823 * 124.43886 * 269.99528 * 4 3 2 26 26 H 1.08994 * 109.47407 * 60.00198 * 1 2 3 27 27 H 1.09000 * 109.46875 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47117 * 300.00109 * 1 2 3 29 29 H 1.08992 * 109.47211 * 60.00517 * 3 2 1 30 30 H 1.08999 * 109.47110 * 299.99346 * 3 2 1 31 31 H 0.97000 * 120.00015 * 0.02562 * 9 7 6 32 32 H 0.96994 * 119.99656 * 180.02562 * 13 12 10 33 33 H 1.08004 * 120.08016 * 0.02562 * 20 19 18 34 34 H 1.08001 * 119.92403 * 180.27189 * 21 20 19 35 35 H 1.07995 * 119.84601 * 179.72008 * 22 21 20 36 36 H 1.08005 * 119.91668 * 180.02562 * 23 22 21 37 37 H 1.07998 * 120.08215 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2364 1.1294 -1.0604 6 6 5.5500 1.0314 -0.8984 7 6 6.4992 0.9647 -2.0173 8 8 7.6969 0.9724 -1.8006 9 7 6.0440 0.8950 -3.2840 10 6 6.9287 0.8334 -4.3268 11 1 7.9914 0.8403 -4.1345 12 6 6.4592 0.7621 -5.6332 13 7 5.1661 0.7543 -5.8672 14 14 7.6663 0.6773 -7.0562 15 1 7.9804 -0.7430 -7.3549 16 1 7.0637 1.3136 -8.2550 17 1 8.9144 1.3939 -6.6900 18 6 5.9348 0.9948 0.4265 19 6 7.3181 0.8852 0.9302 20 6 7.8242 1.8482 1.8061 21 6 9.1159 1.7367 2.2768 22 6 9.9136 0.6801 1.8743 23 6 9.4204 -0.2748 1.0026 24 6 8.1288 -0.1788 0.5283 25 16 4.4761 1.1101 1.4078 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.6885 1.8464 0.8900 30 1 1.6885 1.8464 -0.8900 31 1 5.0895 0.8893 -3.4567 32 1 4.8386 0.7041 -6.7787 33 1 7.2041 2.6759 2.1176 34 1 9.5071 2.4782 2.9576 35 1 10.9257 0.6002 2.2425 36 1 10.0484 -1.0971 0.6929 37 1 7.7450 -0.9249 -0.1517 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000442007772.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:45 Heat of formation + Delta-G solvation = -8.001105 kcal Electronic energy + Delta-G solvation = -23338.583740 eV Core-core repulsion = 19786.977837 eV Total energy + Delta-G solvation = -3551.605903 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.84036 -38.52673 -37.93466 -37.19105 -34.09281 -32.33872 -31.35207 -30.58653 -30.03320 -27.37132 -26.03912 -25.68578 -23.66499 -22.16714 -21.92766 -20.67242 -18.85023 -18.10210 -17.71845 -16.65431 -16.59247 -15.68947 -15.61737 -15.43952 -14.86243 -14.68660 -14.64773 -14.01898 -13.87356 -13.36539 -13.10331 -12.95249 -12.85531 -12.58342 -12.30808 -12.30456 -11.73408 -11.52822 -11.44914 -11.15515 -11.03578 -10.78356 -10.45195 -10.32240 -9.87458 -9.61172 -9.47775 -9.31727 -8.84101 -8.62087 -8.40347 -8.04369 -7.87861 -6.56128 -3.86542 0.57334 1.29152 1.73133 1.82967 2.07993 2.55942 3.17517 3.21051 3.27424 3.70047 4.07746 4.15632 4.29132 4.44313 4.86830 4.97388 5.09095 5.19254 5.20924 5.23757 5.28322 5.29385 5.38870 5.42139 5.51313 5.54258 5.75217 5.91326 5.99630 6.23182 6.37715 6.58942 6.74288 6.83658 6.92920 6.94357 7.30102 7.41275 7.85971 8.00128 8.53725 9.04767 9.45980 10.01300 10.59590 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.007929 B = 0.005784 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3530.488945 B = 4839.990958 C = 8045.981970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.143 3.857 4 C 0.028 3.972 5 N -0.427 5.427 6 C 0.065 3.935 7 C 0.487 3.513 8 O -0.582 6.582 9 N -0.523 5.523 10 C -0.291 4.291 11 H 0.110 0.890 12 C 0.024 3.976 13 N -0.878 5.878 14 Si 0.936 3.064 15 H -0.275 1.275 16 H -0.281 1.281 17 H -0.266 1.266 18 C -0.149 4.149 19 C 0.000 4.000 20 C -0.104 4.104 21 C -0.131 4.131 22 C -0.116 4.116 23 C -0.124 4.124 24 C -0.039 4.039 25 S 0.139 5.861 26 H 0.046 0.954 27 H 0.088 0.912 28 H 0.042 0.958 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.403 0.597 32 H 0.277 0.723 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.813 0.673 15.294 16.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.300 6.300 3 C 0.064 3.936 4 C -0.251 4.251 5 N -0.144 5.144 6 C -0.070 4.070 7 C 0.272 3.728 8 O -0.468 6.468 9 N -0.155 5.155 10 C -0.421 4.421 11 H 0.128 0.872 12 C -0.180 4.180 13 N -0.517 5.517 14 Si 0.762 3.238 15 H -0.201 1.201 16 H -0.207 1.207 17 H -0.191 1.191 18 C -0.273 4.273 19 C -0.003 4.003 20 C -0.123 4.123 21 C -0.149 4.149 22 C -0.134 4.134 23 C -0.142 4.142 24 C -0.060 4.060 25 S 0.398 5.602 26 H 0.064 0.936 27 H 0.107 0.893 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.238 0.762 32 H 0.087 0.913 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.139 0.861 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.648 0.552 15.754 16.434 hybrid contribution 0.145 0.212 -1.742 1.760 sum -4.503 0.764 14.012 14.738 Atomic orbital electron populations 1.22777 0.80393 1.03114 1.00156 1.87986 1.19965 1.26563 1.95472 1.20777 0.84825 0.85833 1.02214 1.26169 0.99956 1.07533 0.91413 1.66075 1.04788 1.12332 1.31190 1.21317 0.88592 1.03436 0.93703 1.16450 0.86671 0.87982 0.81702 1.90690 1.14192 1.58497 1.83461 1.41890 1.10589 1.58971 1.04058 1.19898 0.91824 1.46180 0.84212 0.87236 1.25461 0.96758 0.96665 0.99158 1.69659 1.12571 1.46964 1.22499 0.85760 0.79898 0.78697 0.79429 1.20077 1.20673 1.19071 1.24655 0.96983 1.11133 0.94497 1.17623 0.89413 0.95920 0.97353 1.21134 0.96080 0.97754 0.97366 1.20865 0.94060 0.98682 1.01293 1.21131 0.99261 0.94897 0.98141 1.20987 0.95475 0.99618 0.98109 1.21101 0.93237 0.96514 0.95101 1.83489 0.97297 1.67779 1.11648 0.93561 0.89319 0.93980 0.91164 0.89907 0.76207 0.91344 0.86498 0.86322 0.86492 0.86127 0.86059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.38 -5.32 10.69 -35.23 -0.38 -5.70 16 3 C 0.14 1.88 6.50 36.01 0.23 2.11 16 4 C 0.03 0.47 6.95 -13.68 -0.10 0.38 16 5 N -0.43 -8.89 9.98 -8.17 -0.08 -8.97 16 6 C 0.06 1.44 6.77 -84.07 -0.57 0.87 16 7 C 0.49 12.65 7.67 -12.76 -0.10 12.55 16 8 O -0.58 -15.99 13.10 5.17 0.07 -15.92 16 9 N -0.52 -14.26 5.27 -12.11 -0.06 -14.32 16 10 C -0.29 -8.19 9.68 -15.01 -0.15 -8.33 16 11 H 0.11 3.16 7.15 -52.49 -0.38 2.79 16 12 C 0.02 0.65 5.50 -17.45 -0.10 0.55 16 13 N -0.88 -24.10 13.05 55.50 0.72 -23.37 16 14 Si 0.94 20.74 29.55 -169.99 -5.02 15.72 16 15 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 16 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 17 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 18 C -0.15 -2.86 6.03 -35.84 -0.22 -3.08 16 19 C 0.00 0.00 4.91 -104.99 -0.52 -0.52 16 20 C -0.10 -1.64 9.79 -39.16 -0.38 -2.03 16 21 C -0.13 -1.82 10.03 -39.64 -0.40 -2.22 16 22 C -0.12 -1.61 10.04 -39.48 -0.40 -2.01 16 23 C -0.12 -1.95 10.03 -39.64 -0.40 -2.35 16 24 C -0.04 -0.73 7.58 -39.16 -0.30 -1.03 16 25 S 0.14 2.08 23.13 -107.50 -2.49 -0.41 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.40 11.02 7.43 -40.82 -0.30 10.71 16 32 H 0.28 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.12 1.63 8.06 -52.48 -0.42 1.21 16 34 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.12 1.63 8.06 -52.48 -0.42 1.21 16 37 H 0.12 2.40 7.88 -52.49 -0.41 1.99 16 LS Contribution 342.30 15.07 5.16 5.16 Total: -1.00 -32.48 342.30 -8.37 -40.86 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -4.03 Total: 10.64 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -2.26 Total: -3.68 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: 0.58 Total: -46.66 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.31 Total: -21.62 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -2.49 Total: -0.41 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.48 -8.37 -40.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000442007772.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.855 kcal (2) G-P(sol) polarization free energy of solvation -32.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds