Wall clock time and date at job start Tue Mar 31 2020 12:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42906 * 113.99372 * 2 1 4 4 C 1.50706 * 109.46307 * 180.02562 * 3 2 1 5 5 N 1.28468 * 124.44370 * 90.00230 * 4 3 2 6 6 C 1.32717 * 117.40681 * 179.70081 * 5 4 3 7 7 C 1.46883 * 123.36587 * 180.35046 * 6 5 4 8 8 O 1.21717 * 120.00127 * 174.72183 * 7 6 5 9 9 N 1.34777 * 120.00079 * 354.72250 * 7 6 5 10 10 C 1.36894 * 120.00009 * 179.97438 * 9 7 6 11 11 H 1.07997 * 120.00031 * 0.02562 * 10 9 7 12 12 C 1.39006 * 119.99950 * 180.02562 * 10 9 7 13 13 N 1.31405 * 119.99865 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00091 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46975 * 90.00049 * 14 12 10 16 16 H 1.48496 * 109.46757 * 209.99741 * 14 12 10 17 17 H 1.48500 * 109.47034 * 329.99903 * 14 12 10 18 18 C 1.38012 * 113.27235 * 0.51706 * 6 5 4 19 19 C 1.47622 * 126.21001 * 179.78819 * 18 6 5 20 20 C 1.39676 * 120.15293 * 123.79028 * 19 18 6 21 21 C 1.37928 * 119.84081 * 179.74925 * 20 19 18 22 22 C 1.38376 * 120.15880 * 0.55049 * 21 20 19 23 23 C 1.38384 * 120.30573 * 359.70451 * 22 21 20 24 24 C 1.37925 * 120.15814 * 0.02562 * 23 22 21 25 25 S 1.70823 * 124.43886 * 269.99528 * 4 3 2 26 26 H 1.08994 * 109.47407 * 60.00198 * 1 2 3 27 27 H 1.09000 * 109.46875 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47117 * 300.00109 * 1 2 3 29 29 H 1.08992 * 109.47211 * 60.00517 * 3 2 1 30 30 H 1.08999 * 109.47110 * 299.99346 * 3 2 1 31 31 H 0.97000 * 120.00015 * 0.02562 * 9 7 6 32 32 H 0.96994 * 119.99656 * 180.02562 * 13 12 10 33 33 H 1.08004 * 120.08016 * 0.02562 * 20 19 18 34 34 H 1.08001 * 119.92403 * 180.27189 * 21 20 19 35 35 H 1.07995 * 119.84601 * 179.72008 * 22 21 20 36 36 H 1.08005 * 119.91668 * 180.02562 * 23 22 21 37 37 H 1.07998 * 120.08215 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2364 1.1294 -1.0604 6 6 5.5500 1.0314 -0.8984 7 6 6.4992 0.9647 -2.0173 8 8 7.6969 0.9724 -1.8006 9 7 6.0440 0.8950 -3.2840 10 6 6.9287 0.8334 -4.3268 11 1 7.9914 0.8403 -4.1345 12 6 6.4592 0.7621 -5.6332 13 7 5.1661 0.7543 -5.8672 14 14 7.6663 0.6773 -7.0562 15 1 7.9804 -0.7430 -7.3549 16 1 7.0637 1.3136 -8.2550 17 1 8.9144 1.3939 -6.6900 18 6 5.9348 0.9948 0.4265 19 6 7.3181 0.8852 0.9302 20 6 7.8242 1.8482 1.8061 21 6 9.1159 1.7367 2.2768 22 6 9.9136 0.6801 1.8743 23 6 9.4204 -0.2748 1.0026 24 6 8.1288 -0.1788 0.5283 25 16 4.4761 1.1101 1.4078 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.6885 1.8464 0.8900 30 1 1.6885 1.8464 -0.8900 31 1 5.0895 0.8893 -3.4567 32 1 4.8386 0.7041 -6.7787 33 1 7.2041 2.6759 2.1176 34 1 9.5071 2.4782 2.9576 35 1 10.9257 0.6002 2.2425 36 1 10.0484 -1.0971 0.6929 37 1 7.7450 -0.9249 -0.1517 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000442007772.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:44 Heat of formation + Delta-G solvation = -30.528529 kcal Electronic energy + Delta-G solvation = -23339.560602 eV Core-core repulsion = 19786.977837 eV Total energy + Delta-G solvation = -3552.582765 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.40208 -39.74511 -39.45483 -38.58621 -36.10466 -33.70745 -33.35850 -31.81120 -31.26506 -28.59892 -27.68443 -26.84609 -25.28684 -23.40718 -23.20137 -22.28734 -20.44762 -19.95087 -19.42464 -17.87849 -17.60827 -17.13887 -16.90009 -16.69419 -16.46887 -16.16728 -15.96840 -15.72945 -15.46674 -14.83182 -14.61360 -14.38579 -14.27921 -13.77219 -13.67300 -13.52830 -13.23551 -12.96847 -12.93013 -12.49273 -12.36954 -12.22428 -12.13160 -11.99900 -11.58287 -10.90852 -10.82749 -10.71574 -10.50289 -10.15120 -10.01210 -9.75586 -9.28405 -8.56620 -6.01901 -0.82307 -0.04553 0.41255 0.57789 0.69870 0.98214 1.38320 1.44120 1.53573 2.24412 2.39994 2.62516 2.89724 3.11446 3.23300 3.36687 3.73659 3.81417 4.04037 4.13214 4.20382 4.26242 4.29485 4.40912 4.53748 4.60224 4.61347 4.71722 4.82436 4.88451 5.04457 5.15726 5.31297 5.53602 5.60591 5.65549 5.87258 6.07978 6.10705 6.38429 6.58957 6.98842 7.42262 7.97055 8.60679 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.007929 B = 0.005784 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3530.488945 B = 4839.990958 C = 8045.981970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.413 6.413 3 C 0.142 3.858 4 C 0.015 3.985 5 N -0.465 5.465 6 C 0.022 3.978 7 C 0.491 3.509 8 O -0.604 6.604 9 N -0.542 5.542 10 C -0.333 4.333 11 H 0.090 0.910 12 C -0.013 4.013 13 N -0.911 5.911 14 Si 1.005 2.995 15 H -0.267 1.267 16 H -0.267 1.267 17 H -0.267 1.267 18 C -0.149 4.149 19 C -0.034 4.034 20 C -0.110 4.110 21 C -0.124 4.124 22 C -0.108 4.108 23 C -0.133 4.133 24 C -0.070 4.070 25 S 0.252 5.748 26 H 0.050 0.950 27 H 0.097 0.903 28 H 0.069 0.931 29 H 0.114 0.886 30 H 0.083 0.917 31 H 0.398 0.602 32 H 0.282 0.718 33 H 0.137 0.863 34 H 0.160 0.840 35 H 0.156 0.844 36 H 0.136 0.864 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.807 1.651 18.242 18.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.333 6.333 3 C 0.062 3.938 4 C -0.263 4.263 5 N -0.183 5.183 6 C -0.113 4.113 7 C 0.277 3.723 8 O -0.491 6.491 9 N -0.175 5.175 10 C -0.463 4.463 11 H 0.108 0.892 12 C -0.214 4.214 13 N -0.551 5.551 14 Si 0.827 3.173 15 H -0.192 1.192 16 H -0.192 1.192 17 H -0.192 1.192 18 C -0.274 4.274 19 C -0.037 4.037 20 C -0.129 4.129 21 C -0.141 4.141 22 C -0.126 4.126 23 C -0.151 4.151 24 C -0.090 4.090 25 S 0.513 5.487 26 H 0.068 0.932 27 H 0.115 0.885 28 H 0.087 0.913 29 H 0.131 0.869 30 H 0.101 0.899 31 H 0.232 0.768 32 H 0.092 0.908 33 H 0.155 0.845 34 H 0.177 0.823 35 H 0.173 0.827 36 H 0.153 0.847 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.670 1.527 18.736 19.370 hybrid contribution 0.106 -0.103 -2.258 2.263 sum -4.564 1.425 16.478 17.157 Atomic orbital electron populations 1.23020 0.78043 1.04263 1.01689 1.87926 1.22538 1.27007 1.95792 1.21015 0.82338 0.86111 1.04322 1.26965 1.01931 1.05726 0.91727 1.66018 1.04358 1.14355 1.33528 1.20810 0.89174 1.07692 0.93579 1.17075 0.87241 0.85705 0.82325 1.90633 1.15573 1.58632 1.84251 1.41895 1.10057 1.61027 1.04526 1.19873 0.91223 1.49609 0.85587 0.89199 1.26342 0.98642 0.95448 1.01007 1.69739 1.14034 1.47959 1.23322 0.84761 0.77413 0.78977 0.76136 1.19219 1.19179 1.19157 1.25155 0.99694 1.07733 0.94799 1.17864 0.89433 0.97239 0.99136 1.21443 0.97443 0.97414 0.96599 1.21375 0.92992 0.99040 1.00722 1.21601 1.00889 0.93653 0.96468 1.21266 0.94477 1.00932 0.98472 1.21036 0.94982 0.96940 0.96087 1.82992 0.92847 1.64762 1.08130 0.93162 0.88479 0.91261 0.86867 0.89943 0.76770 0.90825 0.84505 0.82261 0.82651 0.84650 0.89318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.67 16 2 O -0.41 -10.91 10.69 -148.98 -1.59 -12.50 16 3 C 0.14 3.44 6.50 71.24 0.46 3.90 16 4 C 0.01 0.48 6.95 88.60 0.62 1.10 16 5 N -0.47 -20.01 9.98 -179.75 -1.79 -21.81 16 6 C 0.02 1.04 6.77 41.22 0.28 1.32 16 7 C 0.49 27.29 7.67 86.51 0.66 27.95 16 8 O -0.60 -35.35 13.10 -4.40 -0.06 -35.41 16 9 N -0.54 -31.80 5.27 -310.43 -1.64 -33.44 16 10 C -0.33 -20.06 9.68 84.09 0.81 -19.25 16 11 H 0.09 5.59 7.15 -2.91 -0.02 5.57 16 12 C -0.01 -0.74 5.50 84.94 0.47 -0.27 16 13 N -0.91 -52.14 13.05 21.68 0.28 -51.86 16 14 Si 1.01 43.93 29.55 68.60 2.03 45.96 16 15 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 16 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 17 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 18 C -0.15 -5.79 6.03 24.70 0.15 -5.64 16 19 C -0.03 -1.25 4.91 -20.11 -0.10 -1.35 16 20 C -0.11 -3.23 9.79 22.54 0.22 -3.01 16 21 C -0.12 -2.99 10.03 22.23 0.22 -2.76 16 22 C -0.11 -2.67 10.04 22.34 0.22 -2.45 16 23 C -0.13 -4.14 10.03 22.23 0.22 -3.92 16 24 C -0.07 -2.70 7.58 22.54 0.17 -2.53 16 25 S 0.25 6.98 23.13 -56.49 -1.31 5.68 16 26 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.40 23.50 7.43 -92.71 -0.69 22.81 16 32 H 0.28 14.86 8.31 -92.71 -0.77 14.09 16 33 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 34 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 35 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 36 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 37 H 0.09 3.87 7.88 -2.91 -0.02 3.84 16 Total: -1.00 -77.24 342.30 2.01 -75.23 By element: Atomic # 1 Polarization: 32.96 SS G_CDS: 0.43 Total: 33.39 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: 5.66 Total: -5.24 kcal Atomic # 7 Polarization: -103.96 SS G_CDS: -3.15 Total: -107.10 kcal Atomic # 8 Polarization: -46.26 SS G_CDS: -1.65 Total: -47.91 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: 6.98 SS G_CDS: -1.31 Total: 5.68 kcal Total: -77.24 2.01 -75.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000442007772.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.698 kcal (2) G-P(sol) polarization free energy of solvation -77.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds