Wall clock time and date at job start Tue Mar 31 2020 11:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46997 * 162.55277 * 3 2 1 5 5 C 1.33220 * 120.00273 * 263.93464 * 4 3 2 6 6 H 1.07994 * 120.00187 * 201.30196 * 5 4 3 7 7 C 1.46797 * 119.99768 * 21.31241 * 5 4 3 8 8 N 1.29319 * 120.00085 * 9.73753 * 7 5 4 9 9 Si 1.86798 * 119.99871 * 189.74780 * 7 5 4 10 10 H 1.48495 * 109.47325 * 89.99709 * 9 7 5 11 11 H 1.48501 * 109.46774 * 209.99623 * 9 7 5 12 12 H 1.48498 * 109.46952 * 329.99343 * 9 7 5 13 13 C 1.34775 * 119.99840 * 83.93778 * 4 3 2 14 14 O 1.21652 * 120.00155 * 180.02562 * 13 4 3 15 15 C 1.41801 * 120.00038 * 0.02562 * 13 4 3 16 16 C 1.35137 * 119.99853 * 173.32237 * 15 13 4 17 17 C 1.47001 * 120.00223 * 350.24285 * 16 15 13 18 18 C 1.39983 * 120.15028 * 313.37346 * 17 16 15 19 19 C 1.37736 * 119.85155 * 180.29717 * 18 17 16 20 20 C 1.38739 * 120.14855 * 359.70082 * 19 18 17 21 21 F 1.35098 * 119.84992 * 180.02562 * 20 19 18 22 22 C 1.38686 * 120.29715 * 0.02562 * 20 19 18 23 23 C 1.37782 * 120.15323 * 0.02562 * 22 20 19 24 24 N 1.48014 * 120.07374 * 179.97438 * 23 22 20 25 25 O 1.31695 * 120.00341 * 354.82885 * 24 23 22 26 26 O 1.31701 * 119.99769 * 174.55763 * 24 23 22 27 27 H 4.40641 * 5.51441 * 179.97438 * 4 1 2 28 28 H 1.08995 * 109.47424 * 42.55256 * 3 2 1 29 29 H 1.09001 * 109.47578 * 282.55252 * 3 2 1 30 30 H 0.97000 * 119.99855 * 180.02562 * 8 7 5 31 31 H 1.08000 * 119.99902 * 353.31849 * 15 13 4 32 32 H 1.08005 * 119.99811 * 170.24162 * 16 15 13 33 33 H 1.08005 * 120.07259 * 0.04335 * 18 17 16 34 34 H 1.08000 * 119.92904 * 179.72423 * 19 18 17 35 35 H 1.08003 * 119.92347 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1336 1.3186 -0.4141 5 6 3.4705 1.5352 -1.6847 6 1 4.1334 2.3498 -1.9363 7 6 2.9405 0.6666 -2.7428 8 7 2.0056 -0.1850 -2.4725 9 14 3.6166 0.7914 -4.4797 10 1 4.7630 -0.1400 -4.6327 11 1 2.5533 0.4315 -5.4518 12 1 4.0710 2.1818 -4.7352 13 6 3.2416 2.3119 0.4903 14 8 3.6461 3.4064 0.1464 15 6 2.8836 2.0812 1.8429 16 6 3.1176 3.0311 2.7752 17 6 3.9310 4.2081 2.4373 18 6 5.1447 4.0523 1.7576 19 6 5.9049 5.1588 1.4495 20 6 5.4671 6.4262 1.8059 21 9 6.2173 7.5073 1.5003 22 6 4.2629 6.5881 2.4745 23 6 3.4931 5.4897 2.7897 24 7 2.2085 5.6645 3.5038 25 8 1.8482 6.8579 3.9286 26 8 1.4232 4.6275 3.7097 27 1 -1.0503 -0.0005 -0.0001 28 1 3.0096 -0.7562 -0.6949 29 1 3.0094 -0.2225 1.0031 30 1 1.6556 -0.7591 -3.1717 31 1 2.4239 1.1465 2.1279 32 1 2.7069 2.9256 3.7685 33 1 5.4863 3.0663 1.4789 34 1 6.8436 5.0397 0.9290 35 1 3.9277 7.5775 2.7487 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490961900.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:36 Heat of formation + Delta-G solvation = 85.412568 kcal Electronic energy + Delta-G solvation = -26043.085538 eV Core-core repulsion = 21929.317179 eV Total energy + Delta-G solvation = -4113.768358 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -48.94490 -40.13054 -39.00058 -37.74292 -35.66418 -34.24392 -33.12454 -32.59889 -31.74425 -31.56369 -29.54649 -26.88777 -26.46407 -25.20073 -23.46050 -22.24701 -21.37188 -18.85503 -18.38983 -18.19769 -17.92930 -17.17766 -16.77046 -16.25903 -15.99717 -15.86626 -15.42141 -15.39511 -14.84608 -14.42438 -14.24271 -13.74626 -13.52967 -13.16583 -12.80769 -12.63442 -12.49476 -12.25633 -11.94860 -11.70838 -11.42601 -11.32351 -10.99863 -10.89287 -10.75567 -10.61290 -10.36580 -9.79807 -9.60122 -9.55978 -9.32144 -9.10816 -8.58150 -8.39606 -7.78314 -6.93640 -4.00289 -0.43837 0.77439 1.37633 1.44764 1.92260 2.89006 2.97108 3.00485 3.49544 3.54679 3.76388 3.86476 4.08860 4.11559 4.56120 4.67530 4.71504 4.82180 4.85737 5.06046 5.19880 5.28144 5.57016 5.72000 5.79870 5.96186 5.99967 6.08420 6.14563 6.18850 6.46045 6.66778 6.69325 6.74439 6.81622 6.85005 7.10965 7.67973 8.00260 8.58924 8.76182 8.97492 9.75382 10.01057 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.014072 B = 0.004540 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.231891 B = 6165.413117 C = 7538.654854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.125 4.125 3 C 0.217 3.783 4 N -0.380 5.380 5 C -0.322 4.322 6 H 0.117 0.883 7 C 0.039 3.961 8 N -0.807 5.807 9 Si 0.935 3.065 10 H -0.270 1.270 11 H -0.279 1.279 12 H -0.261 1.261 13 C 0.409 3.591 14 O -0.598 6.598 15 C -0.132 4.132 16 C -0.123 4.123 17 C 0.055 3.945 18 C -0.005 4.005 19 C -0.112 4.112 20 C 0.093 3.907 21 F -0.133 7.133 22 C -0.112 4.112 23 C 0.013 3.987 24 N -0.005 5.005 25 O -0.203 6.203 26 O -0.162 6.162 27 H 0.202 0.798 28 H 0.117 0.883 29 H 0.071 0.929 30 H 0.286 0.714 31 H 0.124 0.876 32 H 0.143 0.857 33 H 0.150 0.850 34 H 0.147 0.853 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.855 0.154 5.977 8.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.127 4.127 3 C 0.094 3.906 4 N -0.089 5.089 5 C -0.451 4.451 6 H 0.134 0.866 7 C -0.177 4.177 8 N -0.437 5.437 9 Si 0.760 3.240 10 H -0.195 1.195 11 H -0.204 1.204 12 H -0.185 1.185 13 C 0.206 3.794 14 O -0.489 6.489 15 C -0.154 4.154 16 C -0.145 4.145 17 C 0.052 3.948 18 C -0.024 4.024 19 C -0.132 4.132 20 C 0.072 3.928 21 F -0.111 7.111 22 C -0.132 4.132 23 C -0.074 4.074 24 N 0.469 4.531 25 O -0.388 6.388 26 O -0.357 6.357 27 H 0.219 0.781 28 H 0.134 0.866 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.141 0.859 32 H 0.161 0.839 33 H 0.167 0.833 34 H 0.165 0.835 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 6.478 0.442 5.329 8.400 hybrid contribution -0.754 0.121 -0.968 1.233 sum 5.724 0.563 4.361 7.218 Atomic orbital electron populations 1.24381 0.95485 1.01240 1.05281 1.22957 0.94183 0.99241 0.96273 1.18571 0.84705 0.88018 0.99315 1.42941 1.49256 1.07908 1.08778 1.20840 1.26774 1.16161 0.81368 0.86577 1.27161 0.94160 0.95208 1.01177 1.69016 1.20396 1.18131 1.36173 0.85758 0.78819 0.79946 0.79481 1.19509 1.20376 1.18492 1.16796 0.91064 0.84866 0.86628 1.90615 1.54847 1.23096 1.80368 1.22289 1.00537 0.98624 0.93940 1.21955 0.99552 0.92560 1.00450 1.18868 0.93952 0.90740 0.91223 1.21019 0.90525 0.99611 0.91255 1.21325 1.01512 0.90602 0.99722 1.17205 0.90469 0.83614 1.01468 1.91513 1.74968 1.53362 1.91276 1.20477 0.93485 0.99496 0.99760 1.19961 0.85366 0.95231 1.06876 1.50257 1.02544 1.02287 0.97995 1.96230 1.80363 1.06578 1.55658 1.96241 1.49579 1.27317 1.62583 0.78091 0.86576 0.91150 0.90185 0.85858 0.83937 0.83275 0.83488 0.82681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.72 19.25 29.55 0.57 -4.15 16 2 C -0.13 -2.56 11.05 -37.13 -0.41 -2.97 16 3 C 0.22 4.23 4.77 -6.83 -0.03 4.20 16 4 N -0.38 -8.52 2.50 -119.58 -0.30 -8.82 16 5 C -0.32 -7.74 9.52 -13.49 -0.13 -7.87 16 6 H 0.12 2.94 7.41 -52.49 -0.39 2.55 16 7 C 0.04 0.87 5.28 -15.15 -0.08 0.79 16 8 N -0.81 -18.15 9.09 56.00 0.51 -17.64 16 9 Si 0.94 17.74 29.65 -169.99 -5.04 12.69 16 10 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 11 H -0.28 -5.28 7.11 56.52 0.40 -4.87 16 12 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 13 C 0.41 9.00 6.49 -14.90 -0.10 8.90 16 14 O -0.60 -14.47 11.66 5.23 0.06 -14.41 16 15 C -0.13 -2.42 8.80 -39.32 -0.35 -2.77 16 16 C -0.12 -2.10 7.81 -37.14 -0.29 -2.39 16 17 C 0.05 0.96 4.41 -105.06 -0.46 0.50 16 18 C 0.00 -0.08 6.66 -39.11 -0.26 -0.34 16 19 C -0.11 -1.60 10.01 -39.58 -0.40 -1.99 16 20 C 0.09 1.37 7.31 -39.23 -0.29 1.08 16 21 F -0.13 -1.87 17.26 2.25 0.04 -1.83 16 22 C -0.11 -1.76 9.54 -39.58 -0.38 -2.14 16 23 C 0.01 0.24 6.91 -79.48 -0.55 -0.31 16 24 N 0.00 -0.10 4.98 34.19 0.17 0.08 16 25 O -0.20 -3.88 19.16 -31.57 -0.60 -4.49 16 26 O -0.16 -3.20 16.43 -31.57 -0.52 -3.72 16 27 H 0.20 3.15 7.80 -54.08 -0.42 2.73 16 28 H 0.12 2.34 6.31 -51.93 -0.33 2.02 16 29 H 0.07 1.13 6.55 -51.93 -0.34 0.79 16 30 H 0.29 6.03 8.26 -40.82 -0.34 5.69 16 31 H 0.12 2.00 6.09 -52.49 -0.32 1.68 16 32 H 0.14 2.20 6.78 -52.48 -0.36 1.85 16 33 H 0.15 2.29 7.23 -52.48 -0.38 1.92 16 34 H 0.15 1.68 8.06 -52.49 -0.42 1.25 16 35 H 0.16 2.20 7.58 -52.48 -0.40 1.80 16 LS Contribution 321.94 15.07 4.85 4.85 Total: -1.00 -28.13 321.94 -6.47 -34.59 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -2.49 Total: 8.15 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -3.15 Total: -9.46 kcal Atomic # 7 Polarization: -26.77 SS G_CDS: 0.38 Total: -26.39 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -1.06 Total: -22.62 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.04 Total: 12.69 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.13 -6.47 -34.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490961900.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.006 kcal (2) G-P(sol) polarization free energy of solvation -28.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds