Wall clock time and date at job start Tue Mar 31 2020 11:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46997 * 162.55277 * 3 2 1 5 5 C 1.33220 * 120.00273 * 263.93464 * 4 3 2 6 6 H 1.07994 * 120.00187 * 201.30196 * 5 4 3 7 7 C 1.46797 * 119.99768 * 21.31241 * 5 4 3 8 8 N 1.29319 * 120.00085 * 9.73753 * 7 5 4 9 9 Si 1.86798 * 119.99871 * 189.74780 * 7 5 4 10 10 H 1.48495 * 109.47325 * 89.99709 * 9 7 5 11 11 H 1.48501 * 109.46774 * 209.99623 * 9 7 5 12 12 H 1.48498 * 109.46952 * 329.99343 * 9 7 5 13 13 C 1.34775 * 119.99840 * 83.93778 * 4 3 2 14 14 O 1.21652 * 120.00155 * 180.02562 * 13 4 3 15 15 C 1.41801 * 120.00038 * 0.02562 * 13 4 3 16 16 C 1.35137 * 119.99853 * 173.32237 * 15 13 4 17 17 C 1.47001 * 120.00223 * 350.24285 * 16 15 13 18 18 C 1.39983 * 120.15028 * 313.37346 * 17 16 15 19 19 C 1.37736 * 119.85155 * 180.29717 * 18 17 16 20 20 C 1.38739 * 120.14855 * 359.70082 * 19 18 17 21 21 F 1.35098 * 119.84992 * 180.02562 * 20 19 18 22 22 C 1.38686 * 120.29715 * 0.02562 * 20 19 18 23 23 C 1.37782 * 120.15323 * 0.02562 * 22 20 19 24 24 N 1.48014 * 120.07374 * 179.97438 * 23 22 20 25 25 O 1.31695 * 120.00341 * 354.82885 * 24 23 22 26 26 O 1.31701 * 119.99769 * 174.55763 * 24 23 22 27 27 H 4.40641 * 5.51441 * 179.97438 * 4 1 2 28 28 H 1.08995 * 109.47424 * 42.55256 * 3 2 1 29 29 H 1.09001 * 109.47578 * 282.55252 * 3 2 1 30 30 H 0.97000 * 119.99855 * 180.02562 * 8 7 5 31 31 H 1.08000 * 119.99902 * 353.31849 * 15 13 4 32 32 H 1.08005 * 119.99811 * 170.24162 * 16 15 13 33 33 H 1.08005 * 120.07259 * 0.04335 * 18 17 16 34 34 H 1.08000 * 119.92904 * 179.72423 * 19 18 17 35 35 H 1.08003 * 119.92347 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1336 1.3186 -0.4141 5 6 3.4705 1.5352 -1.6847 6 1 4.1334 2.3498 -1.9363 7 6 2.9405 0.6666 -2.7428 8 7 2.0056 -0.1850 -2.4725 9 14 3.6166 0.7914 -4.4797 10 1 4.7630 -0.1400 -4.6327 11 1 2.5533 0.4315 -5.4518 12 1 4.0710 2.1818 -4.7352 13 6 3.2416 2.3119 0.4903 14 8 3.6461 3.4064 0.1464 15 6 2.8836 2.0812 1.8429 16 6 3.1176 3.0311 2.7752 17 6 3.9310 4.2081 2.4373 18 6 5.1447 4.0523 1.7576 19 6 5.9049 5.1588 1.4495 20 6 5.4671 6.4262 1.8059 21 9 6.2173 7.5073 1.5003 22 6 4.2629 6.5881 2.4745 23 6 3.4931 5.4897 2.7897 24 7 2.2085 5.6645 3.5038 25 8 1.8482 6.8579 3.9286 26 8 1.4232 4.6275 3.7097 27 1 -1.0503 -0.0005 -0.0001 28 1 3.0096 -0.7562 -0.6949 29 1 3.0094 -0.2225 1.0031 30 1 1.6556 -0.7591 -3.1717 31 1 2.4239 1.1465 2.1279 32 1 2.7069 2.9256 3.7685 33 1 5.4863 3.0663 1.4789 34 1 6.8436 5.0397 0.9290 35 1 3.9277 7.5775 2.7487 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490961900.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:35 Heat of formation + Delta-G solvation = 72.211424 kcal Electronic energy + Delta-G solvation = -26043.657982 eV Core-core repulsion = 21929.317179 eV Total energy + Delta-G solvation = -4114.340803 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.14048 -41.57811 -40.55904 -39.17459 -37.25774 -35.75999 -34.63369 -34.18902 -33.23329 -32.95854 -30.93350 -28.40893 -27.91957 -26.75269 -24.86604 -23.62648 -22.83004 -20.30304 -19.87967 -19.72296 -19.39164 -18.66987 -18.30063 -17.58568 -17.30977 -17.22982 -16.95280 -16.69478 -16.32621 -15.96056 -15.72275 -15.13189 -14.88332 -14.51653 -14.33714 -14.15491 -14.00676 -13.60159 -13.52379 -13.04414 -12.87210 -12.72854 -12.53044 -12.50742 -12.23916 -12.15898 -11.89878 -11.36662 -11.11572 -11.01148 -10.68497 -10.60101 -10.17952 -10.01304 -9.26123 -8.54944 -5.77902 -1.89285 -0.54130 -0.03897 0.07298 0.53037 1.39260 1.42032 1.50423 2.01451 2.18756 2.23243 2.34238 2.47394 2.84241 3.06897 3.24889 3.28229 3.38084 3.65487 3.72841 3.86163 3.89634 4.17887 4.32319 4.48326 4.61798 4.64679 4.75776 4.80948 4.85205 4.95203 5.15697 5.23132 5.31651 5.39348 5.43195 5.60612 5.98420 6.33638 7.06979 7.12423 7.35570 8.08822 8.38756 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.014072 B = 0.004540 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.231891 B = 6165.413117 C = 7538.654854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.156 4.156 3 C 0.219 3.781 4 N -0.395 5.395 5 C -0.371 4.371 6 H 0.088 0.912 7 C 0.014 3.986 8 N -0.826 5.826 9 Si 0.992 3.008 10 H -0.257 1.257 11 H -0.275 1.275 12 H -0.276 1.276 13 C 0.413 3.587 14 O -0.626 6.626 15 C -0.147 4.147 16 C -0.092 4.092 17 C 0.034 3.966 18 C -0.011 4.011 19 C -0.098 4.098 20 C 0.103 3.897 21 F -0.124 7.124 22 C -0.111 4.111 23 C 0.000 4.000 24 N -0.005 5.005 25 O -0.201 6.201 26 O -0.185 6.185 27 H 0.230 0.770 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.288 0.712 31 H 0.146 0.854 32 H 0.163 0.837 33 H 0.153 0.847 34 H 0.180 0.820 35 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.556 0.696 6.794 9.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.158 4.158 3 C 0.098 3.902 4 N -0.105 5.105 5 C -0.501 4.501 6 H 0.106 0.894 7 C -0.200 4.200 8 N -0.457 5.457 9 Si 0.814 3.186 10 H -0.182 1.182 11 H -0.201 1.201 12 H -0.201 1.201 13 C 0.210 3.790 14 O -0.519 6.519 15 C -0.168 4.168 16 C -0.114 4.114 17 C 0.032 3.968 18 C -0.030 4.030 19 C -0.117 4.117 20 C 0.083 3.917 21 F -0.102 7.102 22 C -0.131 4.131 23 C -0.088 4.088 24 N 0.467 4.533 25 O -0.389 6.389 26 O -0.375 6.375 27 H 0.247 0.753 28 H 0.122 0.878 29 H 0.121 0.879 30 H 0.100 0.900 31 H 0.164 0.836 32 H 0.181 0.819 33 H 0.170 0.830 34 H 0.197 0.803 35 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 7.164 0.940 6.170 9.502 hybrid contribution -0.864 0.268 -0.955 1.315 sum 6.301 1.209 5.215 8.268 Atomic orbital electron populations 1.25188 0.96484 1.00173 1.04421 1.23400 0.94983 1.00223 0.97155 1.18622 0.84517 0.86541 1.00568 1.42938 1.50371 1.08866 1.08319 1.20571 1.29184 1.17421 0.82893 0.89376 1.27689 0.94146 0.94730 1.03398 1.69072 1.21063 1.18701 1.36853 0.84955 0.78542 0.79046 0.76007 1.18199 1.20053 1.20050 1.17346 0.89405 0.84432 0.87831 1.90578 1.55533 1.24311 1.81471 1.22285 1.01917 1.00197 0.92402 1.22325 0.96888 0.91288 1.00936 1.19126 0.94808 0.90866 0.92042 1.21141 0.90420 1.00504 0.90909 1.21693 1.02163 0.89758 0.98076 1.17220 0.90000 0.83996 1.00511 1.91548 1.74624 1.53001 1.91054 1.20698 0.93495 0.99688 0.99250 1.20153 0.85151 0.95975 1.07490 1.50445 1.02901 1.02129 0.97832 1.96218 1.80513 1.06602 1.55583 1.96231 1.50171 1.27378 1.63749 0.75299 0.87791 0.87950 0.89989 0.83615 0.81937 0.82963 0.80287 0.81191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.18 19.25 74.32 1.43 -7.75 16 2 C -0.16 -6.36 11.05 31.12 0.34 -6.02 16 3 C 0.22 8.63 4.77 84.57 0.40 9.03 16 4 N -0.39 -18.06 2.50 -650.46 -1.63 -19.69 16 5 C -0.37 -18.57 9.52 86.72 0.83 -17.75 16 6 H 0.09 4.73 7.41 -2.91 -0.02 4.71 16 7 C 0.01 0.65 5.28 87.30 0.46 1.11 16 8 N -0.83 -37.82 9.09 23.26 0.21 -37.61 16 9 Si 0.99 37.17 29.65 68.60 2.03 39.21 16 10 H -0.26 -9.02 7.11 99.48 0.71 -8.32 16 11 H -0.28 -10.05 7.11 99.48 0.71 -9.35 16 12 H -0.28 -10.83 7.11 99.48 0.71 -10.13 16 13 C 0.41 18.22 6.49 85.12 0.55 18.77 16 14 O -0.63 -30.49 11.66 -4.20 -0.05 -30.54 16 15 C -0.15 -5.22 8.80 22.44 0.20 -5.02 16 16 C -0.09 -3.02 7.81 23.85 0.19 -2.83 16 17 C 0.03 1.14 4.41 -20.15 -0.09 1.05 16 18 C -0.01 -0.32 6.66 22.57 0.15 -0.17 16 19 C -0.10 -2.52 10.01 22.27 0.22 -2.30 16 20 C 0.10 2.74 7.31 22.50 0.16 2.91 16 21 F -0.12 -3.08 17.26 44.97 0.78 -2.31 16 22 C -0.11 -3.23 9.54 22.27 0.21 -3.02 16 23 C 0.00 0.01 6.91 36.68 0.25 0.26 16 24 N 0.00 -0.18 4.98 -45.74 -0.23 -0.41 16 25 O -0.20 -7.40 19.16 3.52 0.07 -7.33 16 26 O -0.19 -7.07 16.43 3.51 0.06 -7.01 16 27 H 0.23 6.78 7.80 -4.40 -0.03 6.75 16 28 H 0.10 4.30 6.31 -2.39 -0.02 4.29 16 29 H 0.10 3.20 6.55 -2.39 -0.02 3.18 16 30 H 0.29 12.29 8.26 -92.71 -0.77 11.52 16 31 H 0.15 4.47 6.09 -2.91 -0.02 4.46 16 32 H 0.16 4.66 6.78 -2.91 -0.02 4.64 16 33 H 0.15 4.51 7.23 -2.91 -0.02 4.49 16 34 H 0.18 3.44 8.06 -2.91 -0.02 3.41 16 35 H 0.17 4.39 7.58 -2.91 -0.02 4.37 16 Total: -1.00 -61.12 321.94 7.72 -53.40 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: 1.16 Total: 24.03 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: 5.32 Total: -11.74 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: -1.65 Total: -57.71 kcal Atomic # 8 Polarization: -44.96 SS G_CDS: 0.08 Total: -44.88 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.78 Total: -2.31 kcal Atomic # 14 Polarization: 37.17 SS G_CDS: 2.03 Total: 39.21 kcal Total: -61.12 7.72 -53.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490961900.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.612 kcal (2) G-P(sol) polarization free energy of solvation -61.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds