Wall clock time and date at job start Tue Mar 31 2020 12:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99780 * 2 1 4 4 H 1.48499 * 109.47177 * 274.00041 * 3 2 1 5 5 H 1.48500 * 109.47196 * 34.00232 * 3 2 1 6 6 H 1.48501 * 109.47059 * 154.00354 * 3 2 1 7 7 C 1.37881 * 120.00287 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99367 * 6.80699 * 7 2 1 9 9 C 1.50698 * 120.00140 * 186.81066 * 7 2 1 10 10 O 1.42898 * 110.28834 * 58.26585 * 9 7 2 11 11 C 1.54259 * 110.32186 * 180.39740 * 9 7 2 12 12 C 1.54377 * 105.15199 * 118.94693 * 11 9 7 13 13 N 1.48725 * 104.51411 * 336.26659 * 12 11 9 14 14 C 1.38669 * 111.01259 * 158.96799 * 13 12 11 15 15 C 1.38605 * 121.05244 * 304.20466 * 14 13 12 16 16 C 1.38806 * 119.68767 * 179.81710 * 15 14 13 17 17 N 1.31290 * 121.85641 * 0.45451 * 16 15 14 18 18 C 1.33765 * 121.67043 * 359.78253 * 17 16 15 19 19 C 1.40680 * 120.99358 * 179.91478 * 18 17 16 20 20 Cl 1.73601 * 120.13152 * 0.07418 * 19 18 17 21 21 C 1.36230 * 119.73264 * 180.02562 * 19 18 17 22 22 C 1.39257 * 121.02341 * 0.04108 * 21 19 18 23 23 C 1.36246 * 120.83458 * 0.02562 * 22 21 19 24 24 C 1.40195 * 119.64987 * 359.97438 * 23 22 21 25 25 C 1.48559 * 104.28969 * 39.36577 * 13 12 11 26 26 H 0.97003 * 119.99786 * 0.02562 * 1 2 3 27 27 H 0.96704 * 114.00006 * 60.67510 * 10 9 7 28 28 H 1.09008 * 110.31950 * 237.89499 * 11 9 7 29 29 H 1.09003 * 110.32322 * 359.97438 * 11 9 7 30 30 H 1.09001 * 110.41167 * 94.97402 * 12 11 9 31 31 H 1.08993 * 110.41192 * 217.41810 * 12 11 9 32 32 H 1.08005 * 120.16190 * 0.03048 * 15 14 13 33 33 H 1.08003 * 119.07431 * 180.24034 * 16 15 14 34 34 H 1.08003 * 119.48331 * 180.02562 * 21 19 18 35 35 H 1.08001 * 119.58317 * 179.97438 * 22 21 19 36 36 H 1.08000 * 120.17575 * 179.97438 * 23 22 21 37 37 H 1.08997 * 110.40875 * 201.79585 * 25 13 12 38 38 H 1.08995 * 110.41339 * 79.34981 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4119 2.0953 -1.3966 5 1 1.4913 2.6268 0.7830 6 1 3.5864 1.4173 0.6137 7 6 2.0046 -1.1940 0.0005 8 1 1.4702 -2.1261 -0.1099 9 6 3.5036 -1.1985 0.1553 10 8 3.8772 -0.5634 1.3796 11 6 4.0420 -2.6436 0.1152 12 6 4.9885 -2.6879 -1.1035 13 7 4.5157 -1.5856 -1.9829 14 6 5.5112 -1.1903 -2.8636 15 6 6.7538 -0.7845 -2.4026 16 6 7.7309 -0.3982 -3.3096 17 7 7.5127 -0.3959 -4.6042 18 6 6.3362 -0.7705 -5.1188 19 6 6.1173 -0.7609 -6.5084 20 17 7.3824 -0.2600 -7.5865 21 6 4.9088 -1.1471 -7.0047 22 6 3.8811 -1.5524 -6.1569 23 6 4.0573 -1.5730 -4.8060 24 6 5.2885 -1.1819 -4.2612 25 6 4.1706 -0.4886 -1.0424 26 1 -0.4850 0.8401 -0.0004 27 1 3.5234 -0.9938 2.1700 28 1 4.5912 -2.8684 1.0296 29 1 3.2219 -3.3496 -0.0159 30 1 6.0178 -2.5104 -0.7921 31 1 4.9051 -3.6468 -1.6149 32 1 6.9619 -0.7721 -1.3429 33 1 8.6969 -0.0875 -2.9397 34 1 4.7453 -1.1385 -8.0722 35 1 2.9321 -1.8535 -6.5754 36 1 3.2529 -1.8888 -4.1583 37 1 3.4727 0.2066 -1.5090 38 1 5.0714 0.0340 -0.7209 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591975402.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:02 Heat of formation + Delta-G solvation = 25.746096 kcal Electronic energy + Delta-G solvation = -24431.428715 eV Core-core repulsion = 20879.242494 eV Total energy + Delta-G solvation = -3552.186221 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.08195 -39.00451 -37.21781 -36.31789 -35.60621 -32.65196 -32.32528 -30.70891 -30.17822 -28.70757 -28.36432 -24.89261 -23.84242 -23.75827 -22.17886 -20.76792 -19.72088 -18.24797 -17.60318 -17.32269 -16.92660 -15.57661 -15.36593 -14.92645 -14.65692 -14.58883 -14.36854 -14.00794 -13.71276 -13.54959 -13.29047 -12.82298 -12.67644 -12.47639 -12.19885 -11.91067 -11.80683 -11.67579 -11.41202 -11.38891 -11.14422 -10.83986 -10.44500 -10.25782 -10.08645 -9.77555 -9.59280 -9.14746 -8.88655 -8.75926 -8.48526 -8.39788 -8.02815 -6.22275 -4.30783 0.26050 0.74997 1.82513 2.11419 2.86049 3.25804 3.37860 3.56055 3.91064 3.99804 4.15504 4.39404 4.70967 4.78312 4.89548 4.92414 5.07139 5.20199 5.21504 5.30090 5.34917 5.45060 5.53749 5.61218 5.70239 5.80414 5.88723 5.97028 6.04459 6.17751 6.25247 6.40151 6.45439 6.47955 6.62988 6.71170 6.84822 7.05745 7.44341 7.52799 7.85119 8.19065 8.73641 8.88260 9.42028 10.88362 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.018093 B = 0.004286 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.194794 B = 6531.964183 C = 6966.334885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.088 3.912 3 Si 0.863 3.137 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.226 1.226 7 C -0.540 4.540 8 H 0.079 0.921 9 C 0.221 3.779 10 O -0.579 6.579 11 C -0.139 4.139 12 C 0.043 3.957 13 N -0.472 5.472 14 C 0.172 3.828 15 C -0.221 4.221 16 C 0.148 3.852 17 N -0.479 5.479 18 C 0.141 3.859 19 C -0.028 4.028 20 Cl -0.056 7.056 21 C -0.083 4.083 22 C -0.128 4.128 23 C -0.054 4.054 24 C -0.083 4.083 25 C 0.056 3.944 26 H 0.266 0.734 27 H 0.366 0.634 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.045 0.955 31 H 0.078 0.922 32 H 0.139 0.861 33 H 0.159 0.841 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.153 0.847 37 H 0.085 0.915 38 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.212 -3.736 -8.939 15.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.117 4.117 3 Si 0.691 3.309 4 H -0.215 1.215 5 H -0.222 1.222 6 H -0.148 1.148 7 C -0.577 4.577 8 H 0.097 0.903 9 C 0.181 3.819 10 O -0.386 6.386 11 C -0.177 4.177 12 C -0.083 4.083 13 N -0.194 5.194 14 C 0.068 3.932 15 C -0.243 4.243 16 C -0.023 4.023 17 N -0.187 5.187 18 C 0.017 3.983 19 C -0.055 4.055 20 Cl -0.027 7.027 21 C -0.104 4.104 22 C -0.147 4.147 23 C -0.073 4.073 24 C -0.086 4.086 25 C -0.069 4.069 26 H 0.075 0.925 27 H 0.213 0.787 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.157 0.843 33 H 0.176 0.824 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.170 0.830 37 H 0.103 0.897 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 12.625 -3.106 -10.408 16.654 hybrid contribution 0.109 0.641 1.227 1.388 sum 12.734 -2.465 -9.181 15.891 Atomic orbital electron populations 1.69932 1.06576 1.27418 1.48369 1.24956 0.94550 0.99456 0.92744 0.87188 0.83138 0.82973 0.77641 1.21532 1.22181 1.14838 1.21298 0.88781 0.95028 1.52592 0.90321 1.19654 0.94286 0.86424 0.81560 1.86503 1.77506 1.58273 1.16284 1.23001 0.98403 1.00614 0.95660 1.23227 0.97217 0.94218 0.93638 1.62689 1.32743 1.08099 1.15838 1.19451 0.90128 0.91323 0.92320 1.22769 0.95420 1.03965 1.02145 1.22724 0.98738 0.92882 0.87983 1.68080 1.20557 1.15307 1.14767 1.18409 0.89937 0.97781 0.92138 1.20336 0.91270 1.05166 0.88739 1.98349 1.51912 1.89631 1.62815 1.20854 0.91170 0.97369 1.01003 1.20889 0.99137 1.01343 0.93300 1.21329 0.96272 0.94317 0.95382 1.18615 0.95357 1.02274 0.92345 1.23483 0.98828 0.92180 0.92447 0.92472 0.78658 0.91817 0.90293 0.93691 0.90323 0.84305 0.82358 0.84536 0.84513 0.82968 0.89659 0.94122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.94 13.96 55.43 0.77 -25.17 16 2 C 0.09 2.40 5.43 -17.82 -0.10 2.31 16 3 Si 0.86 21.13 24.05 -169.99 -4.09 17.04 16 4 H -0.29 -7.10 7.09 56.52 0.40 -6.70 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.23 -5.33 5.22 56.52 0.29 -5.04 16 7 C -0.54 -13.98 8.82 -34.44 -0.30 -14.28 16 8 H 0.08 2.22 7.60 -52.49 -0.40 1.82 16 9 C 0.22 4.71 0.90 -90.39 -0.08 4.63 16 10 O -0.58 -12.07 10.16 -35.23 -0.36 -12.43 16 11 C -0.14 -2.44 6.43 -25.35 -0.16 -2.60 16 12 C 0.04 0.68 6.37 -2.09 -0.01 0.66 16 13 N -0.47 -8.49 4.60 -166.15 -0.76 -9.25 16 14 C 0.17 2.84 4.91 -83.38 -0.41 2.43 16 15 C -0.22 -3.19 8.12 -39.24 -0.32 -3.51 16 16 C 0.15 1.99 11.13 -17.57 -0.20 1.79 16 17 N -0.48 -7.39 9.81 -11.07 -0.11 -7.49 16 18 C 0.14 2.22 6.60 -84.86 -0.56 1.66 16 19 C -0.03 -0.39 6.33 -39.38 -0.25 -0.64 16 20 Cl -0.06 -0.73 28.52 -51.86 -1.48 -2.21 16 21 C -0.08 -0.99 9.71 -39.93 -0.39 -1.38 16 22 C -0.13 -1.56 9.96 -39.92 -0.40 -1.96 16 23 C -0.05 -0.81 9.56 -39.56 -0.38 -1.18 16 24 C -0.08 -1.34 5.75 -106.66 -0.61 -1.95 16 25 C 0.06 1.15 4.03 -2.18 -0.01 1.15 16 26 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.37 6.55 9.08 45.56 0.41 6.97 16 28 H 0.06 0.99 7.98 -51.92 -0.41 0.58 16 29 H 0.08 1.45 7.42 -51.93 -0.39 1.06 16 30 H 0.04 0.64 6.56 -51.93 -0.34 0.30 16 31 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.14 1.83 6.84 -52.48 -0.36 1.47 16 33 H 0.16 1.56 8.06 -52.48 -0.42 1.14 16 34 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 35 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.15 2.37 7.60 -52.49 -0.40 1.97 16 37 H 0.09 1.99 4.86 -51.93 -0.25 1.73 16 38 H 0.04 0.81 6.75 -51.93 -0.35 0.46 16 LS Contribution 319.88 15.07 4.82 4.82 Total: -1.00 -30.52 319.88 -8.80 -39.32 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -3.42 Total: 8.27 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -4.18 Total: -12.89 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: -0.10 Total: -41.92 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -0.36 Total: -12.43 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.09 Total: 17.04 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.48 Total: -2.21 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.52 -8.80 -39.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591975402.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.065 kcal (2) G-P(sol) polarization free energy of solvation -30.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds