Wall clock time and date at job start Tue Mar 31 2020 12:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99780 * 2 1 4 4 H 1.48499 * 109.47177 * 274.00041 * 3 2 1 5 5 H 1.48500 * 109.47196 * 34.00232 * 3 2 1 6 6 H 1.48501 * 109.47059 * 154.00354 * 3 2 1 7 7 C 1.37881 * 120.00287 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99367 * 6.80699 * 7 2 1 9 9 C 1.50698 * 120.00140 * 186.81066 * 7 2 1 10 10 O 1.42898 * 110.28834 * 58.26585 * 9 7 2 11 11 C 1.54259 * 110.32186 * 180.39740 * 9 7 2 12 12 C 1.54377 * 105.15199 * 118.94693 * 11 9 7 13 13 N 1.48725 * 104.51411 * 336.26659 * 12 11 9 14 14 C 1.38669 * 111.01259 * 158.96799 * 13 12 11 15 15 C 1.38605 * 121.05244 * 304.20466 * 14 13 12 16 16 C 1.38806 * 119.68767 * 179.81710 * 15 14 13 17 17 N 1.31290 * 121.85641 * 0.45451 * 16 15 14 18 18 C 1.33765 * 121.67043 * 359.78253 * 17 16 15 19 19 C 1.40680 * 120.99358 * 179.91478 * 18 17 16 20 20 Cl 1.73601 * 120.13152 * 0.07418 * 19 18 17 21 21 C 1.36230 * 119.73264 * 180.02562 * 19 18 17 22 22 C 1.39257 * 121.02341 * 0.04108 * 21 19 18 23 23 C 1.36246 * 120.83458 * 0.02562 * 22 21 19 24 24 C 1.40195 * 119.64987 * 359.97438 * 23 22 21 25 25 C 1.48559 * 104.28969 * 39.36577 * 13 12 11 26 26 H 0.97003 * 119.99786 * 0.02562 * 1 2 3 27 27 H 0.96704 * 114.00006 * 60.67510 * 10 9 7 28 28 H 1.09008 * 110.31950 * 237.89499 * 11 9 7 29 29 H 1.09003 * 110.32322 * 359.97438 * 11 9 7 30 30 H 1.09001 * 110.41167 * 94.97402 * 12 11 9 31 31 H 1.08993 * 110.41192 * 217.41810 * 12 11 9 32 32 H 1.08005 * 120.16190 * 0.03048 * 15 14 13 33 33 H 1.08003 * 119.07431 * 180.24034 * 16 15 14 34 34 H 1.08003 * 119.48331 * 180.02562 * 21 19 18 35 35 H 1.08001 * 119.58317 * 179.97438 * 22 21 19 36 36 H 1.08000 * 120.17575 * 179.97438 * 23 22 21 37 37 H 1.08997 * 110.40875 * 201.79585 * 25 13 12 38 38 H 1.08995 * 110.41339 * 79.34981 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4119 2.0953 -1.3966 5 1 1.4913 2.6268 0.7830 6 1 3.5864 1.4173 0.6137 7 6 2.0046 -1.1940 0.0005 8 1 1.4702 -2.1261 -0.1099 9 6 3.5036 -1.1985 0.1553 10 8 3.8772 -0.5634 1.3796 11 6 4.0420 -2.6436 0.1152 12 6 4.9885 -2.6879 -1.1035 13 7 4.5157 -1.5856 -1.9829 14 6 5.5112 -1.1903 -2.8636 15 6 6.7538 -0.7845 -2.4026 16 6 7.7309 -0.3982 -3.3096 17 7 7.5127 -0.3959 -4.6042 18 6 6.3362 -0.7705 -5.1188 19 6 6.1173 -0.7609 -6.5084 20 17 7.3824 -0.2600 -7.5865 21 6 4.9088 -1.1471 -7.0047 22 6 3.8811 -1.5524 -6.1569 23 6 4.0573 -1.5730 -4.8060 24 6 5.2885 -1.1819 -4.2612 25 6 4.1706 -0.4886 -1.0424 26 1 -0.4850 0.8401 -0.0004 27 1 3.5234 -0.9938 2.1700 28 1 4.5912 -2.8684 1.0296 29 1 3.2219 -3.3496 -0.0159 30 1 6.0178 -2.5104 -0.7921 31 1 4.9051 -3.6468 -1.6149 32 1 6.9619 -0.7721 -1.3429 33 1 8.6969 -0.0875 -2.9397 34 1 4.7453 -1.1385 -8.0722 35 1 2.9321 -1.8535 -6.5754 36 1 3.2529 -1.8888 -4.1583 37 1 3.4727 0.2066 -1.5090 38 1 5.0714 0.0340 -0.7209 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591975402.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:02 Heat of formation + Delta-G solvation = 4.233404 kcal Electronic energy + Delta-G solvation = -24432.361575 eV Core-core repulsion = 20879.242494 eV Total energy + Delta-G solvation = -3553.119081 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.21966 -40.37743 -38.32615 -37.34515 -37.08191 -34.46964 -33.84837 -31.75240 -31.37431 -30.13068 -29.83565 -26.64030 -25.10354 -24.80698 -23.44906 -21.99926 -21.38298 -19.44943 -19.01155 -18.66846 -18.26111 -17.14530 -16.76778 -16.29227 -15.89262 -15.84777 -15.50458 -15.25893 -15.12555 -14.99960 -14.62225 -14.37732 -14.22136 -13.91900 -13.58202 -13.38969 -13.03730 -12.94759 -12.73590 -12.62114 -12.44290 -12.23098 -12.00891 -11.84502 -11.77832 -11.09302 -10.93380 -10.78723 -10.70424 -10.26032 -9.92668 -9.71728 -9.12226 -8.35567 -6.44659 -0.83050 -0.30148 0.70723 1.08616 1.29640 1.37742 1.59042 1.84283 2.35043 2.60837 2.90640 3.01267 3.15802 3.60004 3.69401 3.74053 3.79955 3.88865 4.01972 4.12770 4.20859 4.24787 4.31129 4.32035 4.44457 4.55877 4.68311 4.79682 4.86861 4.91484 4.95811 5.13884 5.17065 5.30212 5.35645 5.41995 5.52241 5.66977 5.67886 6.12180 6.18466 6.65869 6.77509 7.18151 7.35771 8.78966 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.018093 B = 0.004286 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.194794 B = 6531.964183 C = 6966.334885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.039 3.961 3 Si 0.920 3.080 4 H -0.295 1.295 5 H -0.302 1.302 6 H -0.208 1.208 7 C -0.531 4.531 8 H 0.043 0.957 9 C 0.217 3.783 10 O -0.582 6.582 11 C -0.132 4.132 12 C 0.047 3.953 13 N -0.481 5.481 14 C 0.144 3.856 15 C -0.213 4.213 16 C 0.149 3.851 17 N -0.492 5.492 18 C 0.122 3.878 19 C -0.042 4.042 20 Cl -0.049 7.049 21 C -0.074 4.074 22 C -0.113 4.113 23 C -0.080 4.080 24 C -0.098 4.098 25 C 0.061 3.939 26 H 0.265 0.735 27 H 0.379 0.621 28 H 0.091 0.909 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.155 0.845 33 H 0.196 0.804 34 H 0.169 0.831 35 H 0.166 0.834 36 H 0.136 0.864 37 H 0.054 0.946 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.786 -3.799 -9.653 18.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.161 4.161 3 Si 0.747 3.253 4 H -0.222 1.222 5 H -0.230 1.230 6 H -0.130 1.130 7 C -0.569 4.569 8 H 0.061 0.939 9 C 0.177 3.823 10 O -0.390 6.390 11 C -0.170 4.170 12 C -0.078 4.078 13 N -0.204 5.204 14 C 0.041 3.959 15 C -0.234 4.234 16 C -0.022 4.022 17 N -0.201 5.201 18 C -0.001 4.001 19 C -0.069 4.069 20 Cl -0.020 7.020 21 C -0.094 4.094 22 C -0.131 4.131 23 C -0.099 4.099 24 C -0.101 4.101 25 C -0.065 4.065 26 H 0.074 0.926 27 H 0.228 0.772 28 H 0.109 0.891 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.172 0.828 33 H 0.213 0.787 34 H 0.187 0.813 35 H 0.183 0.817 36 H 0.154 0.846 37 H 0.072 0.928 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 15.220 -3.191 -11.118 19.117 hybrid contribution -0.690 0.574 1.385 1.651 sum 14.530 -2.618 -9.733 17.684 Atomic orbital electron populations 1.70057 1.08186 1.27981 1.51250 1.25631 0.94972 1.02502 0.92992 0.86312 0.82619 0.79343 0.77040 1.22241 1.22968 1.12991 1.21600 0.91572 0.93230 1.50491 0.93874 1.19566 0.91463 0.89198 0.82069 1.86439 1.77194 1.58764 1.16565 1.22887 0.98638 0.97503 0.97987 1.23274 0.97736 0.94242 0.92538 1.62537 1.34480 1.07612 1.15721 1.19526 0.90701 0.93418 0.92264 1.22942 0.94615 1.02783 1.03091 1.23290 0.99891 0.91801 0.87222 1.68133 1.20506 1.15648 1.15800 1.18648 0.90069 0.98432 0.92934 1.20560 0.92225 1.05638 0.88492 1.98347 1.51775 1.89594 1.62306 1.21212 0.90065 0.95596 1.02565 1.21224 1.00308 0.99295 0.92279 1.21308 0.95832 0.96241 0.96508 1.18779 0.95965 1.02797 0.92583 1.23208 0.98370 0.92630 0.92266 0.92645 0.77183 0.89100 0.91743 0.91378 0.89003 0.82776 0.78707 0.81320 0.81653 0.84648 0.92814 0.93082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.71 13.96 21.45 0.30 -56.41 16 2 C 0.04 2.17 5.43 84.66 0.46 2.63 16 3 Si 0.92 44.49 24.05 68.60 1.65 46.14 16 4 H -0.29 -14.42 7.09 99.48 0.71 -13.72 16 5 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 6 H -0.21 -9.36 5.22 99.48 0.52 -8.84 16 7 C -0.53 -28.11 8.82 25.60 0.23 -27.89 16 8 H 0.04 2.54 7.60 -2.91 -0.02 2.52 16 9 C 0.22 9.08 0.90 -10.64 -0.01 9.07 16 10 O -0.58 -23.04 10.16 -148.98 -1.51 -24.56 16 11 C -0.13 -4.43 6.43 31.49 0.20 -4.23 16 12 C 0.05 1.40 6.37 86.42 0.55 1.95 16 13 N -0.48 -16.90 4.60 -679.56 -3.13 -20.03 16 14 C 0.14 4.60 4.91 38.96 0.19 4.79 16 15 C -0.21 -5.61 8.12 22.49 0.18 -5.42 16 16 C 0.15 3.60 11.13 84.91 0.94 4.54 16 17 N -0.49 -14.24 9.81 -188.94 -1.85 -16.10 16 18 C 0.12 3.69 6.60 40.25 0.27 3.96 16 19 C -0.04 -1.09 6.33 22.40 0.14 -0.95 16 20 Cl -0.05 -1.18 28.52 -2.72 -0.08 -1.26 16 21 C -0.07 -1.59 9.71 22.05 0.21 -1.38 16 22 C -0.11 -2.56 9.96 22.05 0.22 -2.34 16 23 C -0.08 -2.36 9.56 22.28 0.21 -2.14 16 24 C -0.10 -3.11 5.75 -21.19 -0.12 -3.23 16 25 C 0.06 2.47 4.03 86.45 0.35 2.82 16 26 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 27 H 0.38 12.82 9.08 -74.05 -0.67 12.15 16 28 H 0.09 2.55 7.98 -2.38 -0.02 2.53 16 29 H 0.06 2.34 7.42 -2.39 -0.02 2.32 16 30 H 0.07 1.71 6.56 -2.39 -0.02 1.69 16 31 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.15 3.51 6.84 -2.91 -0.02 3.49 16 33 H 0.20 3.08 8.06 -2.91 -0.02 3.06 16 34 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 35 H 0.17 2.70 8.06 -2.91 -0.02 2.68 16 36 H 0.14 4.37 7.60 -2.91 -0.02 4.35 16 37 H 0.05 2.50 4.86 -2.39 -0.01 2.49 16 38 H 0.05 1.93 6.75 -2.39 -0.02 1.92 16 Total: -1.00 -67.77 319.88 -0.34 -68.11 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: 0.25 Total: 21.94 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: 4.03 Total: -17.83 kcal Atomic # 7 Polarization: -87.86 SS G_CDS: -4.68 Total: -92.54 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -1.51 Total: -24.56 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.65 Total: 46.14 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.08 Total: -1.26 kcal Total: -67.77 -0.34 -68.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591975402.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.345 kcal (2) G-P(sol) polarization free energy of solvation -67.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds