Wall clock time and date at job start Tue Mar 31 2020 11:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47164 * 2 1 4 4 C 1.50700 * 109.47102 * 239.99887 * 2 1 3 5 5 H 1.07998 * 120.00077 * 244.88511 * 4 2 1 6 6 C 1.37882 * 119.99627 * 64.88228 * 4 2 1 7 7 N 1.31512 * 120.00149 * 5.52502 * 6 4 2 8 8 Si 1.86801 * 119.99430 * 185.52830 * 6 4 2 9 9 H 1.48499 * 109.47252 * 95.00280 * 8 6 4 10 10 H 1.48507 * 109.46559 * 214.99832 * 8 6 4 11 11 H 1.48497 * 109.47563 * 334.99550 * 8 6 4 12 12 S 1.81404 * 109.47157 * 120.00063 * 2 1 3 13 13 C 1.76201 * 102.99739 * 286.04567 * 12 2 1 14 14 C 1.38772 * 120.10934 * 0.31137 * 13 12 2 15 15 C 1.38209 * 119.99429 * 180.27924 * 14 13 12 16 16 C 1.38300 * 120.20002 * 359.74227 * 15 14 13 17 17 C 1.38256 * 120.21307 * 359.97438 * 16 15 14 18 18 C 1.38672 * 120.00212 * 0.02562 * 17 16 15 19 19 N 1.40061 * 120.09674 * 180.02562 * 18 17 16 20 20 C 1.34780 * 119.99963 * 33.81051 * 19 18 17 21 21 O 1.21702 * 119.99989 * 354.80132 * 20 19 18 22 22 C 1.46691 * 119.99439 * 174.79668 * 20 19 18 23 23 C 1.36366 * 126.63870 * 180.02562 * 22 20 19 24 24 N 1.33698 * 107.44854 * 180.02562 * 23 22 20 25 25 C 1.30613 * 108.99727 * 359.97438 * 24 23 22 26 26 O 1.33675 * 109.15752 * 0.24605 * 25 24 23 27 27 H 1.09001 * 109.46977 * 304.30976 * 1 2 3 28 28 H 1.09004 * 109.47212 * 64.31225 * 1 2 3 29 29 H 1.09001 * 109.47332 * 184.31261 * 1 2 3 30 30 H 0.97001 * 119.99407 * 180.02562 * 7 6 4 31 31 H 1.08007 * 120.00404 * 0.03769 * 14 13 12 32 32 H 1.07992 * 119.89839 * 179.71917 * 15 14 13 33 33 H 1.07993 * 119.89408 * 180.02562 * 16 15 14 34 34 H 1.07997 * 119.99375 * 180.02562 * 17 16 15 35 35 H 0.97002 * 119.99666 * 213.81456 * 19 18 17 36 36 H 1.07997 * 126.27523 * 0.02585 * 23 22 20 37 37 H 1.08003 * 125.42169 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5866 -1.6322 -1.1333 6 6 1.7842 -0.1835 -2.4802 7 7 1.2054 0.9917 -2.5953 8 14 2.2702 -1.1393 -4.0099 9 1 1.1045 -1.9196 -4.4972 10 1 2.7086 -0.1923 -5.0666 11 1 3.3838 -2.0653 -3.6821 12 16 2.1347 -0.8552 1.4811 13 6 1.8194 0.3078 2.7667 14 6 1.2286 1.5284 2.4718 15 6 0.9877 2.4412 3.4811 16 6 1.3287 2.1404 4.7872 17 6 1.9123 0.9245 5.0914 18 6 2.1580 0.0022 4.0854 19 7 2.7486 -1.2303 4.3914 20 6 2.4829 -1.8313 5.5682 21 8 1.8064 -1.2608 6.4037 22 6 3.0092 -3.1729 5.8418 23 6 2.8250 -3.9030 6.9787 24 7 3.4697 -5.0634 6.8188 25 6 4.0362 -5.0763 5.6420 26 8 3.7756 -3.9238 5.0170 27 1 -0.3633 0.5793 0.8489 28 1 -0.3634 0.4455 -0.9261 29 1 -0.3634 -1.0247 0.0773 30 1 1.0306 1.3622 -3.4746 31 1 0.9608 1.7666 1.4529 32 1 0.5320 3.3925 3.2492 33 1 1.1378 2.8571 5.5721 34 1 2.1769 0.6931 6.1126 35 1 3.3490 -1.6514 3.7564 36 1 2.2617 -3.5996 7.8488 37 1 4.6255 -5.8872 5.2398 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611149755.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:20 Heat of formation + Delta-G solvation = 18.135008 kcal Electronic energy + Delta-G solvation = -23173.495734 eV Core-core repulsion = 19623.023178 eV Total energy + Delta-G solvation = -3550.472556 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.082 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.70595 -40.39421 -38.20996 -35.41116 -34.73947 -34.14087 -31.28432 -31.04362 -30.08798 -29.16050 -25.42251 -24.74582 -23.11579 -22.78690 -22.29257 -21.36817 -20.60688 -18.88226 -17.82419 -17.11789 -17.07442 -16.74760 -16.19674 -15.31277 -15.14342 -15.05709 -14.64628 -14.39221 -14.06569 -13.83953 -13.59603 -13.39122 -12.89991 -12.59072 -12.09882 -11.86483 -11.81374 -11.50061 -11.22427 -11.14611 -11.06448 -10.72964 -10.63902 -10.48487 -10.22855 -9.99812 -9.46422 -9.43938 -9.22500 -9.03817 -8.59621 -8.15335 -6.66859 -6.31268 -4.37653 0.48848 1.48799 1.63572 2.12825 2.19775 2.34557 2.85006 3.01166 3.17326 3.24743 3.28142 3.52584 3.84409 4.01099 4.24014 4.53005 4.62844 5.03557 5.19070 5.19583 5.25427 5.29714 5.49032 5.69652 5.74834 5.86929 6.10414 6.38504 6.42723 6.46705 6.60984 6.62174 6.68621 6.78904 7.10907 7.17403 7.21310 7.32235 7.46765 7.64443 7.81199 7.89128 8.61384 9.26303 10.77488 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.013327 B = 0.003881 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.469811 B = 7213.332090 C = 9084.211982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.098 3.902 3 H 0.059 0.941 4 C -0.513 4.513 5 H 0.067 0.933 6 C 0.073 3.927 7 N -0.885 5.885 8 Si 0.905 3.095 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.271 1.271 12 S -0.169 6.169 13 C -0.082 4.082 14 C -0.119 4.119 15 C -0.110 4.110 16 C -0.126 4.126 17 C -0.106 4.106 18 C 0.137 3.863 19 N -0.646 5.646 20 C 0.609 3.391 21 O -0.502 6.502 22 C -0.106 4.106 23 C 0.055 3.945 24 N -0.496 5.496 25 C 0.204 3.796 26 O -0.187 6.187 27 H 0.024 0.976 28 H 0.083 0.917 29 H 0.041 0.959 30 H 0.267 0.733 31 H 0.141 0.859 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.139 0.861 35 H 0.418 0.582 36 H 0.198 0.802 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.705 -4.485 14.256 15.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.030 4.030 3 H 0.077 0.923 4 C -0.553 4.553 5 H 0.085 0.915 6 C -0.132 4.132 7 N -0.521 5.521 8 Si 0.732 3.268 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.196 1.196 12 S 0.079 5.921 13 C -0.198 4.198 14 C -0.144 4.144 15 C -0.130 4.130 16 C -0.148 4.148 17 C -0.127 4.127 18 C 0.037 3.963 19 N -0.290 5.290 20 C 0.395 3.605 21 O -0.379 6.379 22 C -0.161 4.161 23 C -0.088 4.088 24 N -0.225 5.225 25 C -0.021 4.021 26 O -0.072 6.072 27 H 0.043 0.957 28 H 0.101 0.899 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.159 0.841 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.157 0.843 35 H 0.256 0.744 36 H 0.215 0.785 37 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 3.762 -5.657 14.998 16.465 hybrid contribution -0.063 0.985 -1.804 2.056 sum 3.698 -4.672 13.194 14.478 Atomic orbital electron populations 1.22091 0.96469 1.00137 1.01125 1.21123 0.95324 0.97870 0.88659 0.92336 1.20614 1.36726 1.09239 0.88676 0.91471 1.24889 0.94684 0.94773 0.98883 1.69918 1.41781 1.15986 1.24461 0.86362 0.78968 0.79684 0.81824 1.20359 1.20915 1.19551 1.85145 1.77894 1.26698 1.02356 1.21856 1.02392 0.99609 0.95930 1.21375 0.99624 0.92565 1.00824 1.21087 1.00068 0.99178 0.92714 1.20942 1.00801 0.96564 0.96455 1.21126 1.00218 0.92355 0.99037 1.17123 1.01294 0.85649 0.92274 1.43275 1.46461 1.20357 1.18899 1.16341 0.79879 0.81843 0.82426 1.90879 1.38447 1.62855 1.45733 1.23070 1.03998 0.95925 0.93155 1.23616 0.98300 0.88680 0.98228 1.70476 1.12411 1.21875 1.17705 1.28481 0.98082 0.87801 0.87708 1.84554 1.53044 1.26259 1.43361 0.95735 0.89887 0.93955 0.92351 0.84110 0.85973 0.85968 0.84313 0.74395 0.78474 0.72664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.68 37.16 0.32 -2.80 16 2 C 0.10 2.30 1.84 -27.88 -0.05 2.25 16 3 H 0.06 1.48 6.87 -51.93 -0.36 1.13 16 4 C -0.51 -13.29 8.52 -34.44 -0.29 -13.58 16 5 H 0.07 1.75 7.72 -52.49 -0.41 1.35 16 6 C 0.07 1.88 5.23 -17.82 -0.09 1.78 16 7 N -0.88 -23.56 11.93 55.43 0.66 -22.90 16 8 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 11 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 12 S -0.17 -3.47 20.07 -107.50 -2.16 -5.62 16 13 C -0.08 -1.54 6.12 -38.90 -0.24 -1.77 16 14 C -0.12 -2.14 8.28 -39.39 -0.33 -2.46 16 15 C -0.11 -1.66 10.04 -39.57 -0.40 -2.05 16 16 C -0.13 -1.78 10.04 -39.55 -0.40 -2.18 16 17 C -0.11 -1.65 8.71 -39.41 -0.34 -2.00 16 18 C 0.14 2.31 6.34 -83.45 -0.53 1.78 16 19 N -0.65 -9.76 5.03 -10.88 -0.05 -9.81 16 20 C 0.61 8.79 7.64 -12.85 -0.10 8.69 16 21 O -0.50 -8.07 14.24 5.19 0.07 -8.00 16 22 C -0.11 -1.30 7.18 -36.84 -0.26 -1.57 16 23 C 0.05 0.61 11.66 -17.41 -0.20 0.40 16 24 N -0.50 -5.27 11.26 -14.66 -0.17 -5.44 16 25 C 0.20 1.67 13.21 52.24 0.69 2.36 16 26 O -0.19 -2.02 10.58 4.41 0.05 -1.97 16 27 H 0.02 0.49 6.05 -51.93 -0.31 0.18 16 28 H 0.08 2.02 6.60 -51.93 -0.34 1.68 16 29 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.27 6.75 8.31 -40.82 -0.34 6.42 16 31 H 0.14 2.70 4.63 -52.48 -0.24 2.46 16 32 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 33 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.14 2.09 6.10 -52.49 -0.32 1.77 16 35 H 0.42 5.98 7.73 -40.82 -0.32 5.67 16 36 H 0.20 1.83 8.06 -52.49 -0.42 1.41 16 37 H 0.26 0.71 8.06 -52.48 -0.42 0.29 16 LS Contribution 331.82 15.07 5.00 5.00 Total: -1.00 -29.66 331.82 -7.38 -37.05 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -3.55 Total: 7.72 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -2.22 Total: -11.14 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 0.44 Total: -38.15 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.12 Total: -9.97 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Atomic # 16 Polarization: -3.47 SS G_CDS: -2.16 Total: -5.62 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.66 -7.38 -37.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611149755.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.181 kcal (2) G-P(sol) polarization free energy of solvation -29.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds